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scvi-tools
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tabula-sapiens-lymph_node-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
Model card Files Metrics Community
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  1. adata.h5ad +1 -1
  2. metrics.json +3 -3
  3. model.pt +1 -1
adata.h5ad CHANGED
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metrics.json CHANGED
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  {
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- "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.61 | 1.61 |\n| Pearson Correlation | 0.81 | 0.80 |\n| Spearman Correlation | 0.74 | 0.74 |\n| R\u00b2 (R-Squared) | 0.31 | 0.27 |",
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- "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 24.22 |\n| Pearson Correlation | 0.68 |\n| Spearman Correlation | 0.76 |\n| R\u00b2 (R-Squared) | -0.51 |",
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- "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 0.97 | 0.59 | 0.77 | 0.97 | 0.30 | 0.87 | 15249.00 |\n| effector CD4-positive, alpha-beta T cell | 0.90 | 0.97 | 0.65 | 0.90 | 0.27 | 0.77 | 6908.00 |\n| effector CD8-positive, alpha-beta T cell | 0.96 | 1.24 | 0.58 | 0.89 | 0.27 | 0.78 | 5860.00 |\n| T cell | 0.89 | 1.55 | 0.54 | 0.85 | 0.25 | 0.71 | 3848.00 |\n| type I NK T cell | 0.92 | 1.57 | 0.56 | 0.85 | 0.29 | 0.71 | 3758.00 |\n| plasma cell | 0.89 | 0.83 | 0.75 | 0.95 | 0.35 | 0.91 | 2426.00 |\n| innate lymphoid cell | 0.73 | 1.64 | 0.50 | 0.78 | 0.25 | 0.58 | 2052.00 |\n| macrophage | 0.76 | 1.65 | 0.73 | 0.93 | 0.45 | 0.88 | 1086.00 |\n| regulatory T cell | 0.86 | 2.72 | 0.60 | 0.77 | 0.40 | 0.71 | 881.00 |\n| mature NK T cell | 0.87 | 3.56 | 0.60 | 0.68 | 0.39 | 0.65 | 437.00 |\n| classical monocyte | 0.85 | 3.92 | 0.64 | 0.72 | 0.46 | 0.76 | 161.00 |\n| endothelial cell | 0.70 | 2.88 | 0.72 | 0.85 | 0.58 | 0.85 | 143.00 |\n| intermediate monocyte | 0.75 | 3.83 | 0.64 | 0.74 | 0.50 | 0.78 | 134.00 |\n| mast cell | 0.84 | 4.67 | 0.63 | 0.65 | 0.36 | 0.74 | 119.00 |\n| stromal cell | 0.72 | 3.11 | 0.75 | 0.84 | 0.52 | 0.85 | 111.00 |\n| neutrophil | 0.87 | 5.21 | 0.57 | 0.55 | 0.41 | 0.83 | 107.00 |\n| CD1c-positive myeloid dendritic cell | 0.69 | 3.71 | 0.69 | 0.75 | 0.51 | 0.79 | 68.00 |\n| CD141-positive myeloid dendritic cell | 0.64 | 4.55 | 0.62 | 0.63 | 0.49 | 0.76 | 48.00 |\n| hematopoietic stem cell | 0.52 | 5.10 | 0.57 | 0.54 | 0.47 | 0.67 | 34.00 |\n| non-classical monocyte | 0.69 | 5.52 | 0.56 | 0.54 | 0.42 | 0.70 | 31.00 |\n| erythrocyte | 0.67 | 6.22 | 0.46 | 0.39 | 0.38 | 0.79 | 24.00 |\n| mature conventional dendritic cell | 0.57 | 6.42 | 0.50 | 0.43 | 0.38 | 0.63 | 17.00 |"
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  }
 
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  {
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+ "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.61 | 1.60 |\n| Pearson Correlation | 0.81 | 0.81 |\n| Spearman Correlation | 0.74 | 0.74 |\n| R\u00b2 (R-Squared) | 0.33 | 0.29 |",
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+ "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 24.05 |\n| Pearson Correlation | 0.69 |\n| Spearman Correlation | 0.76 |\n| R\u00b2 (R-Squared) | -0.48 |",
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+ "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 0.94 | 0.61 | 0.75 | 0.97 | 0.30 | 0.87 | 15249.00 |\n| effector CD4-positive, alpha-beta T cell | 0.88 | 1.08 | 0.57 | 0.89 | 0.26 | 0.77 | 6908.00 |\n| effector CD8-positive, alpha-beta T cell | 0.97 | 1.34 | 0.52 | 0.89 | 0.27 | 0.77 | 5860.00 |\n| T cell | 0.87 | 1.68 | 0.48 | 0.83 | 0.24 | 0.71 | 3848.00 |\n| type I NK T cell | 0.91 | 1.55 | 0.56 | 0.84 | 0.30 | 0.71 | 3758.00 |\n| plasma cell | 0.89 | 0.83 | 0.76 | 0.95 | 0.36 | 0.91 | 2426.00 |\n| innate lymphoid cell | 0.78 | 1.64 | 0.48 | 0.77 | 0.25 | 0.58 | 2052.00 |\n| macrophage | 0.78 | 1.71 | 0.72 | 0.92 | 0.46 | 0.89 | 1086.00 |\n| regulatory T cell | 0.90 | 2.76 | 0.59 | 0.76 | 0.40 | 0.71 | 881.00 |\n| mature NK T cell | 0.89 | 3.74 | 0.57 | 0.66 | 0.39 | 0.65 | 437.00 |\n| classical monocyte | 0.80 | 3.83 | 0.65 | 0.73 | 0.44 | 0.75 | 161.00 |\n| endothelial cell | 0.72 | 2.75 | 0.74 | 0.86 | 0.57 | 0.85 | 143.00 |\n| intermediate monocyte | 0.73 | 4.00 | 0.63 | 0.74 | 0.51 | 0.79 | 134.00 |\n| mast cell | 0.85 | 4.91 | 0.61 | 0.63 | 0.36 | 0.74 | 119.00 |\n| stromal cell | 0.69 | 3.22 | 0.74 | 0.84 | 0.52 | 0.85 | 111.00 |\n| neutrophil | 0.87 | 5.11 | 0.58 | 0.55 | 0.41 | 0.84 | 107.00 |\n| CD1c-positive myeloid dendritic cell | 0.70 | 3.91 | 0.67 | 0.75 | 0.51 | 0.79 | 68.00 |\n| CD141-positive myeloid dendritic cell | 0.67 | 4.59 | 0.62 | 0.63 | 0.47 | 0.75 | 48.00 |\n| hematopoietic stem cell | 0.52 | 4.99 | 0.58 | 0.54 | 0.46 | 0.67 | 34.00 |\n| non-classical monocyte | 0.73 | 5.49 | 0.56 | 0.54 | 0.42 | 0.70 | 31.00 |\n| erythrocyte | 0.66 | 6.45 | 0.45 | 0.37 | 0.37 | 0.79 | 24.00 |\n| mature conventional dendritic cell | 0.56 | 6.27 | 0.51 | 0.45 | 0.37 | 0.62 | 17.00 |"
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  }
model.pt CHANGED
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