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scvi-tools
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tabula-sapiens-heart-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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- | Mean Absolute Error | 0.98 | 1.03 |
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- | Pearson Correlation | 0.80 | 0.80 |
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- | Spearman Correlation | 0.82 | 0.79 |
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- | R² (R-Squared) | 0.57 | 0.58 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
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  | Metric | Training Value |
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  |-------------------------|----------------|
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- | Mean Absolute Error | 13.38 |
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  | Pearson Correlation | 0.73 |
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  | Spearman Correlation | 0.76 |
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- | R² (R-Squared) | -0.63 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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- | cardiac muscle cell | 0.95 | 0.52 | 0.79 | 0.98 | 0.41 | 0.93 | 7205.00 |
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- | cardiac endothelial cell | 0.98 | 1.12 | 0.68 | 0.94 | 0.31 | 0.90 | 2665.00 |
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- | hepatocyte | 0.89 | 0.71 | 0.71 | 0.96 | 0.64 | 0.94 | 1089.00 |
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- | fibroblast of cardiac tissue | 0.87 | 3.01 | 0.67 | 0.83 | 0.26 | 0.79 | 250.00 |
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- | smooth muscle cell | 0.90 | 3.62 | 0.62 | 0.76 | 0.23 | 0.81 | 222.00 |
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- | macrophage | 0.68 | 4.49 | 0.55 | 0.64 | 0.33 | 0.70 | 74.00 |
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  </details>
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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+ | Mean Absolute Error | 0.97 | 1.02 |
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+ | Pearson Correlation | 0.81 | 0.79 |
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+ | Spearman Correlation | 0.82 | 0.80 |
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+ | R² (R-Squared) | 0.58 | 0.57 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
 
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  | Metric | Training Value |
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  |-------------------------|----------------|
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+ | Mean Absolute Error | 13.47 |
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  | Pearson Correlation | 0.73 |
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  | Spearman Correlation | 0.76 |
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+ | R² (R-Squared) | -0.68 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | cardiac muscle cell | 0.96 | 0.50 | 0.81 | 0.98 | 0.41 | 0.93 | 7205.00 |
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+ | cardiac endothelial cell | 0.98 | 1.17 | 0.65 | 0.94 | 0.31 | 0.90 | 2665.00 |
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+ | hepatocyte | 0.88 | 0.74 | 0.68 | 0.96 | 0.64 | 0.94 | 1089.00 |
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+ | fibroblast of cardiac tissue | 0.88 | 2.87 | 0.69 | 0.84 | 0.26 | 0.79 | 250.00 |
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+ | smooth muscle cell | 0.88 | 3.52 | 0.63 | 0.76 | 0.24 | 0.81 | 222.00 |
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+ | macrophage | 0.70 | 4.49 | 0.55 | 0.64 | 0.33 | 0.70 | 74.00 |
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  </details>
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