okraus88 commited on
Commit
a2bc2ec
1 Parent(s): 1de766a

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +2 -1
README.md CHANGED
@@ -40,7 +40,7 @@ NOTE: model embeddings tend to extract features only after using standard batch
40
 
41
  ### Direct Use
42
 
43
- - Create biologically useful embeddings of microscopy images. We provide a [notebook](https://huggingface.co/recursionpharma/OpenPhenom/blob/main/RxRx3-core_inference.ipynb) for running inference on [RxRx3-core](https://huggingface.co/datasets/recursionpharma/rxrx3-core).
44
  - Create contextualized embeddings of each channel of a microscopy image (set `return_channelwise_embeddings=True`)
45
  - Leverage the full MAE encoder + decoder to predict new channels / stains for images without all 6 CellPainting channels
46
 
@@ -95,6 +95,7 @@ def test_model_predict(huggingface_model, C, return_channelwise_embeddings):
95
  expected_output_dim = 384 * C if return_channelwise_embeddings else 384
96
  assert embeddings.shape == (2, expected_output_dim)
97
  ```
 
98
 
99
  **Note: Currently, the model cannot be loaded via the `AutoModel` available in HuggingFace transformers library**
100
 
 
40
 
41
  ### Direct Use
42
 
43
+ - Create biologically useful embeddings of microscopy images
44
  - Create contextualized embeddings of each channel of a microscopy image (set `return_channelwise_embeddings=True`)
45
  - Leverage the full MAE encoder + decoder to predict new channels / stains for images without all 6 CellPainting channels
46
 
 
95
  expected_output_dim = 384 * C if return_channelwise_embeddings else 384
96
  assert embeddings.shape == (2, expected_output_dim)
97
  ```
98
+ We also provide a [notebook](https://huggingface.co/recursionpharma/OpenPhenom/blob/main/RxRx3-core_inference.ipynb) for running inference on [RxRx3-core](https://huggingface.co/datasets/recursionpharma/rxrx3-core).
99
 
100
  **Note: Currently, the model cannot be loaded via the `AutoModel` available in HuggingFace transformers library**
101