Initial Commit

1_Pooling/config.json

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+{
+  "word_embedding_dimension": 768,
+  "pooling_mode_cls_token": false,
+  "pooling_mode_mean_tokens": true,
+  "pooling_mode_max_tokens": false,
+  "pooling_mode_mean_sqrt_len_tokens": false
+}

README.md

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+---
+pipeline_tag: sentence-similarity
+tags:
+- sentence-transformers
+- feature-extraction
+- sentence-similarity
+- transformers
+---
+
+# {MODEL_NAME}
+
+This is a [sentence-transformers](https://www.SBERT.net) model: It maps sentences & paragraphs to a 768 dimensional dense vector space and can be used for tasks like clustering or semantic search.
+
+<!--- Describe your model here -->
+
+## Usage (Sentence-Transformers)
+
+Using this model becomes easy when you have [sentence-transformers](https://www.SBERT.net) installed:
+
+```
+pip install -U sentence-transformers
+```
+
+Then you can use the model like this:
+
+```python
+from sentence_transformers import SentenceTransformer
+sentences = ["This is an example sentence", "Each sentence is converted"]
+
+model = SentenceTransformer('{MODEL_NAME}')
+embeddings = model.encode(sentences)
+print(embeddings)
+```
+
+
+
+## Usage (HuggingFace Transformers)
+Without [sentence-transformers](https://www.SBERT.net), you can use the model like this: First, you pass your input through the transformer model, then you have to apply the right pooling-operation on-top of the contextualized word embeddings.
+
+```python
+from transformers import AutoTokenizer, AutoModel
+import torch
+
+
+#Mean Pooling - Take attention mask into account for correct averaging
+def mean_pooling(model_output, attention_mask):
+    token_embeddings = model_output[0] #First element of model_output contains all token embeddings
+    input_mask_expanded = attention_mask.unsqueeze(-1).expand(token_embeddings.size()).float()
+    return torch.sum(token_embeddings * input_mask_expanded, 1) / torch.clamp(input_mask_expanded.sum(1), min=1e-9)
+
+
+# Sentences we want sentence embeddings for
+sentences = ['This is an example sentence', 'Each sentence is converted']
+
+# Load model from HuggingFace Hub
+tokenizer = AutoTokenizer.from_pretrained('{MODEL_NAME}')
+model = AutoModel.from_pretrained('{MODEL_NAME}')
+
+# Tokenize sentences
+encoded_input = tokenizer(sentences, padding=True, truncation=True, return_tensors='pt')
+
+# Compute token embeddings
+with torch.no_grad():
+    model_output = model(**encoded_input)
+
+# Perform pooling. In this case, max pooling.
+sentence_embeddings = mean_pooling(model_output, encoded_input['attention_mask'])
+
+print("Sentence embeddings:")
+print(sentence_embeddings)
+```
+
+
+
+## Evaluation Results
+
+<!--- Describe how your model was evaluated -->
+
+For an automated evaluation of this model, see the *Sentence Embeddings Benchmark*: [https://seb.sbert.net](https://seb.sbert.net?model_name={MODEL_NAME})
+
+
+## Training
+The model was trained with the parameters:
+
+**DataLoader**:
+
+`torch.utils.data.dataloader.DataLoader` of length 90 with parameters:
+```
+{'batch_size': 64, 'sampler': 'torch.utils.data.sampler.RandomSampler', 'batch_sampler': 'torch.utils.data.sampler.BatchSampler'}
+```
+
+**Loss**:
+
+`sentence_transformers.losses.CosineSimilarityLoss.CosineSimilarityLoss` 
+
+Parameters of the fit()-Method:
+```
+{
+    "callback": null,
+    "epochs": 4,
+    "evaluation_steps": 1000,
+    "evaluator": "sentence_transformers.evaluation.EmbeddingSimilarityEvaluator.EmbeddingSimilarityEvaluator",
+    "max_grad_norm": 1,
+    "optimizer_class": "<class 'transformers.optimization.AdamW'>",
+    "optimizer_params": {
+        "lr": 2e-05
+    },
+    "scheduler": "WarmupLinear",
+    "steps_per_epoch": null,
+    "warmup_steps": 36,
+    "weight_decay": 0.01
+}
+```
+
+
+## Full Model Architecture
+```
+SentenceTransformer(
+  (0): Transformer({'max_seq_length': 75, 'do_lower_case': False}) with Transformer model: BertModel 
+  (1): Pooling({'word_embedding_dimension': 768, 'pooling_mode_cls_token': False, 'pooling_mode_mean_tokens': True, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False})
+)
+```
+
+## Citing & Authors
+
+<!--- Describe where people can find more information -->

config.json

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+{
+  "_name_or_path": "/content/output/biobert_nli/",
+  "architectures": [
+    "BertModel"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "gradient_checkpointing": false,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 768,
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "layer_norm_eps": 1e-12,
+  "max_position_embeddings": 512,
+  "model_type": "bert",
+  "num_attention_heads": 12,
+  "num_hidden_layers": 12,
+  "pad_token_id": 0,
+  "position_embedding_type": "absolute",
+  "transformers_version": "4.8.2",
+  "type_vocab_size": 2,
+  "use_cache": true,
+  "vocab_size": 28996
+}

config_sentence_transformers.json

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+{
+  "__version__": {
+    "sentence_transformers": "2.0.0",
+    "transformers": "4.8.2",
+    "pytorch": "1.9.0+cu102"
+  }
+}

eval/similarity_evaluation_sts-dev_results.csv

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+2,-1,0.862498225734459,0.8607444676744243,0.8531134965292494,0.8582894598791949,0.852096127001669,0.8569850859485606,0.8426112828620612,0.8397988980595207
+3,-1,0.8623952488942723,0.860698831646548,0.8535218186546497,0.8584680116036802,0.8525241029020164,0.8572703328422709,0.8429631275009771,0.8398873012885532

modules.json

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+[
+  {
+    "idx": 0,
+    "name": "0",
+    "path": "",
+    "type": "sentence_transformers.models.Transformer"
+  },
+  {
+    "idx": 1,
+    "name": "1",
+    "path": "1_Pooling",
+    "type": "sentence_transformers.models.Pooling"
+  }
+]

pytorch_model.bin

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+version https://git-lfs.github.com/spec/v1
+oid sha256:a6fa8fa30da7a285b73d88a7d67c9d3b8b76a8d0445a80e36be7d23aebfb3bbc
+size 433322417

sentence_bert_config.json

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+{
+  "max_seq_length": 75,
+  "do_lower_case": false
+}

similarity_evaluation_sts-test_results.csv

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+epoch,steps,cosine_pearson,cosine_spearman,euclidean_pearson,euclidean_spearman,manhattan_pearson,manhattan_spearman,dot_pearson,dot_spearman
+-1,-1,0.8372631363001866,0.834704023438753,0.8261134995087104,0.8264020788932519,0.826851359548798,0.8271963936424541,0.8152392240287768,0.8071120991425896

special_tokens_map.json

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+{"unk_token": "[UNK]", "sep_token": "[SEP]", "pad_token": "[PAD]", "cls_token": "[CLS]", "mask_token": "[MASK]"}

tokenizer_config.json

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+{"do_lower_case": false, "unk_token": "[UNK]", "sep_token": "[SEP]", "pad_token": "[PAD]", "cls_token": "[CLS]", "mask_token": "[MASK]", "tokenize_chinese_chars": true, "strip_accents": null, "model_max_length": 512, "special_tokens_map_file": "/root/.cache/huggingface/transformers/118da8438a7854000cfcf052566f83ae4f4159ac25796e49e16c3b18746041b4.dd8bd9bfd3664b530ea4e645105f557769387b3da9f79bdb55ed556bdd80611d", "name_or_path": "/content/output/biobert_nli/", "do_basic_tokenize": true, "never_split": null, "tokenizer_class": "BertTokenizer"}