animationInterpolation
/
.venv
/Lib
/site-packages
/networkx
/algorithms
/centrality
/betweenness_subset.py
"""Betweenness centrality measures for subsets of nodes.""" | |
import networkx as nx | |
from networkx.algorithms.centrality.betweenness import ( | |
_add_edge_keys, | |
) | |
from networkx.algorithms.centrality.betweenness import ( | |
_single_source_dijkstra_path_basic as dijkstra, | |
) | |
from networkx.algorithms.centrality.betweenness import ( | |
_single_source_shortest_path_basic as shortest_path, | |
) | |
__all__ = [ | |
"betweenness_centrality_subset", | |
"edge_betweenness_centrality_subset", | |
] | |
def betweenness_centrality_subset(G, sources, targets, normalized=False, weight=None): | |
r"""Compute betweenness centrality for a subset of nodes. | |
.. math:: | |
c_B(v) =\sum_{s\in S, t \in T} \frac{\sigma(s, t|v)}{\sigma(s, t)} | |
where $S$ is the set of sources, $T$ is the set of targets, | |
$\sigma(s, t)$ is the number of shortest $(s, t)$-paths, | |
and $\sigma(s, t|v)$ is the number of those paths | |
passing through some node $v$ other than $s, t$. | |
If $s = t$, $\sigma(s, t) = 1$, | |
and if $v \in {s, t}$, $\sigma(s, t|v) = 0$ [2]_. | |
Parameters | |
---------- | |
G : graph | |
A NetworkX graph. | |
sources: list of nodes | |
Nodes to use as sources for shortest paths in betweenness | |
targets: list of nodes | |
Nodes to use as targets for shortest paths in betweenness | |
normalized : bool, optional | |
If True the betweenness values are normalized by $2/((n-1)(n-2))$ | |
for graphs, and $1/((n-1)(n-2))$ for directed graphs where $n$ | |
is the number of nodes in G. | |
weight : None or string, optional (default=None) | |
If None, all edge weights are considered equal. | |
Otherwise holds the name of the edge attribute used as weight. | |
Weights are used to calculate weighted shortest paths, so they are | |
interpreted as distances. | |
Returns | |
------- | |
nodes : dictionary | |
Dictionary of nodes with betweenness centrality as the value. | |
See Also | |
-------- | |
edge_betweenness_centrality | |
load_centrality | |
Notes | |
----- | |
The basic algorithm is from [1]_. | |
For weighted graphs the edge weights must be greater than zero. | |
Zero edge weights can produce an infinite number of equal length | |
paths between pairs of nodes. | |
The normalization might seem a little strange but it is | |
designed to make betweenness_centrality(G) be the same as | |
betweenness_centrality_subset(G,sources=G.nodes(),targets=G.nodes()). | |
The total number of paths between source and target is counted | |
differently for directed and undirected graphs. Directed paths | |
are easy to count. Undirected paths are tricky: should a path | |
from "u" to "v" count as 1 undirected path or as 2 directed paths? | |
For betweenness_centrality we report the number of undirected | |
paths when G is undirected. | |
For betweenness_centrality_subset the reporting is different. | |
If the source and target subsets are the same, then we want | |
to count undirected paths. But if the source and target subsets | |
differ -- for example, if sources is {0} and targets is {1}, | |
then we are only counting the paths in one direction. They are | |
undirected paths but we are counting them in a directed way. | |
To count them as undirected paths, each should count as half a path. | |
References | |
---------- | |
.. [1] Ulrik Brandes, A Faster Algorithm for Betweenness Centrality. | |
Journal of Mathematical Sociology 25(2):163-177, 2001. | |
https://doi.org/10.1080/0022250X.2001.9990249 | |
.. [2] Ulrik Brandes: On Variants of Shortest-Path Betweenness | |
Centrality and their Generic Computation. | |
Social Networks 30(2):136-145, 2008. | |
https://doi.org/10.1016/j.socnet.2007.11.001 | |
""" | |
b = dict.fromkeys(G, 0.0) # b[v]=0 for v in G | |
for s in sources: | |
# single source shortest paths | |
if weight is None: # use BFS | |
S, P, sigma, _ = shortest_path(G, s) | |
else: # use Dijkstra's algorithm | |
S, P, sigma, _ = dijkstra(G, s, weight) | |
b = _accumulate_subset(b, S, P, sigma, s, targets) | |
b = _rescale(b, len(G), normalized=normalized, directed=G.is_directed()) | |
return b | |
def edge_betweenness_centrality_subset( | |
G, sources, targets, normalized=False, weight=None | |
): | |
r"""Compute betweenness centrality for edges for a subset of nodes. | |
.. math:: | |
c_B(v) =\sum_{s\in S,t \in T} \frac{\sigma(s, t|e)}{\sigma(s, t)} | |
where $S$ is the set of sources, $T$ is the set of targets, | |
$\sigma(s, t)$ is the number of shortest $(s, t)$-paths, | |
and $\sigma(s, t|e)$ is the number of those paths | |
passing through edge $e$ [2]_. | |
Parameters | |
---------- | |
G : graph | |
A networkx graph. | |
sources: list of nodes | |
Nodes to use as sources for shortest paths in betweenness | |
targets: list of nodes | |
Nodes to use as targets for shortest paths in betweenness | |
normalized : bool, optional | |
If True the betweenness values are normalized by `2/(n(n-1))` | |
for graphs, and `1/(n(n-1))` for directed graphs where `n` | |
is the number of nodes in G. | |
weight : None or string, optional (default=None) | |
If None, all edge weights are considered equal. | |
Otherwise holds the name of the edge attribute used as weight. | |
Weights are used to calculate weighted shortest paths, so they are | |
interpreted as distances. | |
Returns | |
------- | |
edges : dictionary | |
Dictionary of edges with Betweenness centrality as the value. | |
See Also | |
-------- | |
betweenness_centrality | |
edge_load | |
Notes | |
----- | |
The basic algorithm is from [1]_. | |
For weighted graphs the edge weights must be greater than zero. | |
Zero edge weights can produce an infinite number of equal length | |
paths between pairs of nodes. | |
The normalization might seem a little strange but it is the same | |
as in edge_betweenness_centrality() and is designed to make | |
edge_betweenness_centrality(G) be the same as | |
edge_betweenness_centrality_subset(G,sources=G.nodes(),targets=G.nodes()). | |
References | |
---------- | |
.. [1] Ulrik Brandes, A Faster Algorithm for Betweenness Centrality. | |
Journal of Mathematical Sociology 25(2):163-177, 2001. | |
https://doi.org/10.1080/0022250X.2001.9990249 | |
.. [2] Ulrik Brandes: On Variants of Shortest-Path Betweenness | |
Centrality and their Generic Computation. | |
Social Networks 30(2):136-145, 2008. | |
https://doi.org/10.1016/j.socnet.2007.11.001 | |
""" | |
b = dict.fromkeys(G, 0.0) # b[v]=0 for v in G | |
b.update(dict.fromkeys(G.edges(), 0.0)) # b[e] for e in G.edges() | |
for s in sources: | |
# single source shortest paths | |
if weight is None: # use BFS | |
S, P, sigma, _ = shortest_path(G, s) | |
else: # use Dijkstra's algorithm | |
S, P, sigma, _ = dijkstra(G, s, weight) | |
b = _accumulate_edges_subset(b, S, P, sigma, s, targets) | |
for n in G: # remove nodes to only return edges | |
del b[n] | |
b = _rescale_e(b, len(G), normalized=normalized, directed=G.is_directed()) | |
if G.is_multigraph(): | |
b = _add_edge_keys(G, b, weight=weight) | |
return b | |
def _accumulate_subset(betweenness, S, P, sigma, s, targets): | |
delta = dict.fromkeys(S, 0.0) | |
target_set = set(targets) - {s} | |
while S: | |
w = S.pop() | |
if w in target_set: | |
coeff = (delta[w] + 1.0) / sigma[w] | |
else: | |
coeff = delta[w] / sigma[w] | |
for v in P[w]: | |
delta[v] += sigma[v] * coeff | |
if w != s: | |
betweenness[w] += delta[w] | |
return betweenness | |
def _accumulate_edges_subset(betweenness, S, P, sigma, s, targets): | |
"""edge_betweenness_centrality_subset helper.""" | |
delta = dict.fromkeys(S, 0) | |
target_set = set(targets) | |
while S: | |
w = S.pop() | |
for v in P[w]: | |
if w in target_set: | |
c = (sigma[v] / sigma[w]) * (1.0 + delta[w]) | |
else: | |
c = delta[w] / len(P[w]) | |
if (v, w) not in betweenness: | |
betweenness[(w, v)] += c | |
else: | |
betweenness[(v, w)] += c | |
delta[v] += c | |
if w != s: | |
betweenness[w] += delta[w] | |
return betweenness | |
def _rescale(betweenness, n, normalized, directed=False): | |
"""betweenness_centrality_subset helper.""" | |
if normalized: | |
if n <= 2: | |
scale = None # no normalization b=0 for all nodes | |
else: | |
scale = 1.0 / ((n - 1) * (n - 2)) | |
else: # rescale by 2 for undirected graphs | |
if not directed: | |
scale = 0.5 | |
else: | |
scale = None | |
if scale is not None: | |
for v in betweenness: | |
betweenness[v] *= scale | |
return betweenness | |
def _rescale_e(betweenness, n, normalized, directed=False): | |
"""edge_betweenness_centrality_subset helper.""" | |
if normalized: | |
if n <= 1: | |
scale = None # no normalization b=0 for all nodes | |
else: | |
scale = 1.0 / (n * (n - 1)) | |
else: # rescale by 2 for undirected graphs | |
if not directed: | |
scale = 0.5 | |
else: | |
scale = None | |
if scale is not None: | |
for v in betweenness: | |
betweenness[v] *= scale | |
return betweenness | |