BrainFM / utils /plot_utils.py
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"""
Plotting utilities to visualize training logs.
"""
from pathlib import Path, PurePath
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import seaborn as sns
import torch
from matplotlib.backends.backend_agg import FigureCanvasAgg as FigureCanvas
def fig_to_numpy(fig):
w, h = fig.get_size_inches() * fig.dpi
w = int(w.item())
h = int(h.item())
canvas = FigureCanvas(fig)
canvas.draw()
numpy_image = np.frombuffer(canvas.tostring_rgb(), dtype='uint8').reshape(h, w, 3)
return np.copy(numpy_image)
def get_vis_win_names(vis_dict):
vis_win_names = {
outer_k: {
inner_k: inner_v.win
for inner_k, inner_v in outer_v.items()
}
for outer_k, outer_v in vis_dict.items()
}
return vis_win_names
def plot_logs(logs, fields=('class_error', 'loss_bbox_unscaled', 'mAP'), ewm_col=0, log_name='log.txt'):
'''
Function to plot specific fields from training log(s). Plots both training and test results.
:: Inputs - logs = list containing Path objects, each pointing to individual dir with a log file
- fields = which results to plot from each log file - plots both training and test for each field.
- ewm_col = optional, which column to use as the exponential weighted smoothing of the plots
- log_name = optional, name of log file if different than default 'log.txt'.
:: Outputs - matplotlib plots of results in fields, color coded for each log file.
- solid lines are training results, dashed lines are test results.
'''
func_name = "plot_utils.py::plot_logs"
# verify logs is a list of Paths (list[Paths]) or single Pathlib object Path,
# convert single Path to list to avoid 'not iterable' error
if not isinstance(logs, list):
if isinstance(logs, PurePath):
logs = [logs]
print(f"{func_name} info: logs param expects a list argument, converted to list[Path].")
else:
raise ValueError(f"{func_name} - invalid argument for logs parameter.\n \
Expect list[Path] or single Path obj, received {type(logs)}")
# verify valid dir(s) and that every item in list is Path object
for i, dir in enumerate(logs):
if not isinstance(dir, PurePath):
raise ValueError(f"{func_name} - non-Path object in logs argument of {type(dir)}: \n{dir}")
if dir.exists():
continue
raise ValueError(f"{func_name} - invalid directory in logs argument:\n{dir}")
# load log file(s) and plot
dfs = [pd.read_json(Path(p) / log_name, lines=True) for p in logs]
fig, axs = plt.subplots(ncols=len(fields), figsize=(16, 5))
for df, color in zip(dfs, sns.color_palette(n_colors=len(logs))):
for j, field in enumerate(fields):
if field == 'mAP':
coco_eval = pd.DataFrame(pd.np.stack(df.test_coco_eval.dropna().values)[:, 1]).ewm(com=ewm_col).mean()
axs[j].plot(coco_eval, c=color)
else:
df.interpolate().ewm(com=ewm_col).mean().plot(
y=[f'train_{field}', f'test_{field}'],
ax=axs[j],
color=[color] * 2,
style=['-', '--']
)
for ax, field in zip(axs, fields):
ax.legend([Path(p).name for p in logs])
ax.set_title(field)
def plot_precision_recall(files, naming_scheme='iter'):
if naming_scheme == 'exp_id':
# name becomes exp_id
names = [f.parts[-3] for f in files]
elif naming_scheme == 'iter':
names = [f.stem for f in files]
else:
raise ValueError(f'not supported {naming_scheme}')
fig, axs = plt.subplots(ncols=2, figsize=(16, 5))
for f, color, name in zip(files, sns.color_palette("Blues", n_colors=len(files)), names):
data = torch.load(f)
# precision is n_iou, n_points, n_cat, n_area, max_det
precision = data['precision']
recall = data['params'].recThrs
scores = data['scores']
# take precision for all classes, all areas and 100 detections
precision = precision[0, :, :, 0, -1].mean(1)
scores = scores[0, :, :, 0, -1].mean(1)
prec = precision.mean()
rec = data['recall'][0, :, 0, -1].mean()
print(f'{naming_scheme} {name}: mAP@50={prec * 100: 05.1f}, ' +
f'score={scores.mean():0.3f}, ' +
f'f1={2 * prec * rec / (prec + rec + 1e-8):0.3f}'
)
axs[0].plot(recall, precision, c=color)
axs[1].plot(recall, scores, c=color)
axs[0].set_title('Precision / Recall')
axs[0].legend(names)
axs[1].set_title('Scores / Recall')
axs[1].legend(names)
return fig, axs