Add files using upload-large-folder tool
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- nnActive_results/Dataset001_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-mutual_information__seed-12346/config.json +32 -0
- nnActive_results/Dataset001_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-mutual_information__seed-12346/state.json +12 -0
- nnActive_results/Dataset011_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-power_pe__seed-12348/config.json +32 -0
- nnActive_results/Dataset011_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-power_pe__seed-12348/state.json +12 -0
- nnActive_results/Dataset017_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label2__seed-12346/config.json +32 -0
- nnActive_results/Dataset023_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12348/config.json +32 -0
- nnActive_results/Dataset023_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12348/state.json +12 -0
- nnActive_results/Dataset034_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-mutual_information__seed-12347/config.json +32 -0
- nnActive_results/Dataset034_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-mutual_information__seed-12347/state.json +12 -0
- nnActive_results/Dataset050_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-random-label2__seed-12347/config.json +32 -0
- nnActive_results/Dataset050_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-random-label2__seed-12347/state.json +12 -0
- nnActive_results/Dataset070_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-kmeans_bald__seed-12347/config.json +32 -0
- nnActive_results/Dataset070_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-kmeans_bald__seed-12347/state.json +12 -0
- nnActive_results/Dataset083_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_bald__seed-12348/config.json +32 -0
- nnActive_results/Dataset083_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_bald__seed-12348/state.json +12 -0
- nnActive_results/Dataset085_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_pe__seed-12346/config.json +32 -0
- nnActive_results/Dataset085_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_pe__seed-12346/state.json +12 -0
- nnActive_results/Dataset087_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_pe__seed-12348/config.json +32 -0
- nnActive_results/Dataset087_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_pe__seed-12348/state.json +12 -0
- nnActive_results/Dataset089_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-pred_entropy__seed-12346/config.json +32 -0
- nnActive_results/Dataset089_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-pred_entropy__seed-12346/state.json +12 -0
- nnActive_results/Dataset092_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label2__seed-12345/config.json +32 -0
- nnActive_results/Dataset092_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label2__seed-12345/state.json +12 -0
- nnActive_results/Dataset094_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label2__seed-12347/config.json +32 -0
- nnActive_results/Dataset094_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label2__seed-12347/state.json +12 -0
- nnActive_results/Dataset096_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label__seed-12345/config.json +32 -0
- nnActive_results/Dataset096_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label__seed-12345/state.json +12 -0
- nnActive_results/Dataset098_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label__seed-12347/config.json +32 -0
- nnActive_results/Dataset098_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label__seed-12347/state.json +12 -0
- nnActive_results/Dataset101_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random__seed-12346/config.json +32 -0
- nnActive_results/Dataset101_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random__seed-12346/state.json +12 -0
- nnActive_results/Dataset103_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random__seed-12348/config.json +32 -0
- nnActive_results/Dataset103_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random__seed-12348/state.json +12 -0
- nnActive_results/Dataset119_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-class_pe33__seed-12348/config.json +32 -0
- nnActive_results/Dataset119_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-class_pe33__seed-12348/state.json +12 -0
- nnActive_results/Dataset123_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-class_pe66__seed-12348/config.json +32 -0
- nnActive_results/Dataset123_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-class_pe66__seed-12348/state.json +12 -0
- nnActive_results/Dataset138_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-power_bald__seed-12347/config.json +32 -0
- nnActive_results/Dataset138_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-power_bald__seed-12347/state.json +12 -0
- nnActive_results/Dataset146_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-pred_entropy__seed-12347/config.json +32 -0
- nnActive_results/Dataset146_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-pred_entropy__seed-12347/state.json +12 -0
- nnActive_results/Dataset152_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12345/config.json +32 -0
- nnActive_results/Dataset152_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12345/state.json +12 -0
- nnActive_results/Dataset154_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12347/config.json +32 -0
- nnActive_results/Dataset154_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12347/state.json +12 -0
- nnActive_results/Dataset159_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random__seed-12348/config.json +32 -0
- nnActive_results/Dataset159_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random__seed-12348/state.json +12 -0
- nnActive_results/Dataset176_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-40__qs-40__unc-pred_entropy__seed-12345/config.json +32 -0
- nnActive_results/Dataset176_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-40__qs-40__unc-pred_entropy__seed-12345/state.json +12 -0
- nnActive_results/Dataset177_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-40__qs-40__unc-pred_entropy__seed-12346/config.json +32 -0
nnActive_results/Dataset001_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-mutual_information__seed-12346/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 20,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "mutual_information",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 20,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12346,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset001_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-mutual_information__seed-12346/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 1,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-mutual_information__seed-12346",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset011_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-power_pe__seed-12348/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 20,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "power_pe",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 20,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12348,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset011_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-power_pe__seed-12348/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 11,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-power_pe__seed-12348",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset017_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label2__seed-12346/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 20,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label2",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 20,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12346,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset023_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12348/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 20,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 20,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12348,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset023_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12348/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 23,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12348",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset034_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-mutual_information__seed-12347/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 40,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "mutual_information",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 40,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12347,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset034_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-mutual_information__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 34,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-mutual_information__seed-12347",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset050_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-random-label2__seed-12347/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 40,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label2",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 40,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12347,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset050_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-random-label2__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 50,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-random-label2__seed-12347",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset070_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-kmeans_bald__seed-12347/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 40,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "kmeans_bald",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 40,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12347,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset070_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-kmeans_bald__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 70,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-kmeans_bald__seed-12347",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset083_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_bald__seed-12348/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 60,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "power_bald",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 60,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12348,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset083_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_bald__seed-12348/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 83,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_bald__seed-12348",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset085_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_pe__seed-12346/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 60,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "power_pe",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 60,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12346,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset085_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_pe__seed-12346/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 85,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_pe__seed-12346",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset087_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_pe__seed-12348/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 60,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "power_pe",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 60,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12348,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset087_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_pe__seed-12348/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 87,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-power_pe__seed-12348",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset089_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-pred_entropy__seed-12346/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 60,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "pred_entropy",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 60,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12346,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset089_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-pred_entropy__seed-12346/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 89,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-pred_entropy__seed-12346",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset092_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label2__seed-12345/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 60,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label2",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 60,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12345,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset092_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label2__seed-12345/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 92,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label2__seed-12345",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset094_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label2__seed-12347/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 60,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label2",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 60,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12347,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset094_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label2__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 94,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label2__seed-12347",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset096_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label__seed-12345/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 60,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 60,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12345,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset096_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label__seed-12345/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 96,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label__seed-12345",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset098_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label__seed-12347/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 60,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 60,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12347,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset098_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 98,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random-label__seed-12347",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset101_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random__seed-12346/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 60,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 60,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12346,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset101_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random__seed-12346/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 101,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random__seed-12346",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset103_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random__seed-12348/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 60,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 60,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12348,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset103_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random__seed-12348/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 103,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-60__qs-60__unc-random__seed-12348",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset119_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-class_pe33__seed-12348/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 40,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "class_pe33",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 40,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12348,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset119_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-class_pe33__seed-12348/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 119,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-class_pe33__seed-12348",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset123_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-class_pe66__seed-12348/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
20,
|
| 4 |
+
20,
|
| 5 |
+
20
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 40,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "class_pe66",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 40,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 1,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12348,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset123_Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-class_pe66__seed-12348/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 123,
|
| 3 |
+
"name": "Hippocampus__patch-20_20_20__sb-random-label2-all-classes__sbs-40__qs-40__unc-class_pe66__seed-12348",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset138_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-power_bald__seed-12347/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
10,
|
| 4 |
+
10,
|
| 5 |
+
10
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 20,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "power_bald",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 20,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12347,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset138_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-power_bald__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 138,
|
| 3 |
+
"name": "Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-power_bald__seed-12347",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset146_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-pred_entropy__seed-12347/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
10,
|
| 4 |
+
10,
|
| 5 |
+
10
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 20,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "pred_entropy",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 20,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12347,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset146_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-pred_entropy__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 146,
|
| 3 |
+
"name": "Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-pred_entropy__seed-12347",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset152_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12345/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
10,
|
| 4 |
+
10,
|
| 5 |
+
10
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 20,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 20,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12345,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset152_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12345/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 152,
|
| 3 |
+
"name": "Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12345",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset154_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12347/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
10,
|
| 4 |
+
10,
|
| 5 |
+
10
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 20,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random-label",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 20,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12347,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset154_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12347/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 154,
|
| 3 |
+
"name": "Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random-label__seed-12347",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset159_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random__seed-12348/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
10,
|
| 4 |
+
10,
|
| 5 |
+
10
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 20,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "random",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 20,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 20,
|
| 20 |
+
"seed": 12348,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset159_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random__seed-12348/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 159,
|
| 3 |
+
"name": "Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-20__qs-20__unc-random__seed-12348",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset176_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-40__qs-40__unc-pred_entropy__seed-12345/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
10,
|
| 4 |
+
10,
|
| 5 |
+
10
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 40,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "pred_entropy",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 40,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 40,
|
| 20 |
+
"seed": 12345,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-10_10_10__sb-random-label2-all-classes__sbs-40__qs-40",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|
nnActive_results/Dataset176_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-40__qs-40__unc-pred_entropy__seed-12345/state.json
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": 176,
|
| 3 |
+
"name": "Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-40__qs-40__unc-pred_entropy__seed-12345",
|
| 4 |
+
"loop": 4,
|
| 5 |
+
"preprocess": true,
|
| 6 |
+
"training": true,
|
| 7 |
+
"get_performance": true,
|
| 8 |
+
"pred_tr": false,
|
| 9 |
+
"query": false,
|
| 10 |
+
"update_data": false,
|
| 11 |
+
"in_progress": false
|
| 12 |
+
}
|
nnActive_results/Dataset177_Hippocampus__patch-10_10_10__sb-random-label2-all-classes__sbs-40__qs-40__unc-pred_entropy__seed-12346/config.json
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"patch_size": [
|
| 3 |
+
10,
|
| 4 |
+
10,
|
| 5 |
+
10
|
| 6 |
+
],
|
| 7 |
+
"base_id": 4,
|
| 8 |
+
"starting_budget": "random-label2-all-classes",
|
| 9 |
+
"starting_budget_size": 40,
|
| 10 |
+
"trainer": "nnActiveTrainer_200epochs",
|
| 11 |
+
"model_plans": "nnUNetPlans",
|
| 12 |
+
"model_config": "3d_fullres",
|
| 13 |
+
"uncertainty": "pred_entropy",
|
| 14 |
+
"queries_from_experiment": null,
|
| 15 |
+
"aggregation": "patch",
|
| 16 |
+
"query_size": 40,
|
| 17 |
+
"query_steps": 5,
|
| 18 |
+
"agg_stride": 8,
|
| 19 |
+
"n_patch_per_image": 40,
|
| 20 |
+
"seed": 12346,
|
| 21 |
+
"full_folds": 5,
|
| 22 |
+
"train_folds": 5,
|
| 23 |
+
"dataset": "Dataset004_Hippocampus",
|
| 24 |
+
"pre_suffix": "__patch-10_10_10__sb-random-label2-all-classes__sbs-40__qs-40",
|
| 25 |
+
"use_mirroring": false,
|
| 26 |
+
"use_gaussian": true,
|
| 27 |
+
"tile_step_size": 0.75,
|
| 28 |
+
"patch_overlap": 0.0,
|
| 29 |
+
"additional_overlap": 0.4,
|
| 30 |
+
"pred_tile_step_size": 0.5,
|
| 31 |
+
"disable_pred_tta": false
|
| 32 |
+
}
|