Niksa Praljak
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9599488
Add conda env installation details
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README.md
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@@ -19,18 +19,21 @@ doi: https://doi.org/10.1101/2024.11.11.622734
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## Software Requirements
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### Required Dependencies
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- Python 3.8 or later
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- PyTorch (latest stable version)
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- pandas
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- pyyaml
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### Installation
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Create and activate a conda environment:
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```bash
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conda create -
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conda activate BioM3_env
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```
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Install the required packages:
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## Software Requirements
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### Required Dependencies
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- Python 3.8 or later (recommend Python 3.10 to package conflicts)
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- PyTorch (latest stable version)
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- Huggingface
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- fair-esm
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- pandas
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### Installation
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Create and activate a conda environment:
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```bash
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conda create -p /env_path/BioM3_env python=3.10 # /env_path/ is the location that contains the conda env
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conda activate /env_path/BioM3_env
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cd /path/BioM3 # /path/ is the location that contains the huggingface repo for BioM3
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sh torch_requirements.sh # install torch software
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pip install -r requirements.txt # install remaining packages
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```
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Install the required packages:
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