EpiExtract4GARD-v2 / requirements.txt
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absl-py==0.13.0
aiohttp==3.7.4.post0
altair==4.1.0
argon2-cffi==20.1.0
astor==0.8.1
astunparse==1.6.3
async-generator==1.10
async-timeout==3.0.1
attrs==21.2.0
backcall==0.2.0
backports.zoneinfo==0.2.1
base58==2.1.1
beautifulsoup4==4.10.0
bio==1.3.3
biopython==1.79
biothings-client==0.2.6
bleach==4.0.0
blinker==1.4
blis==0.7.4
bs4==0.0.1
cached-property==1.5.2
cachetools==4.2.2
catalogue==2.0.6
certifi==2021.5.30
cffi==1.14.6
chardet==4.0.0
charset-normalizer==2.0.4
clang==5.0
click==7.1.2
configparser==5.0.2
contextvars==2.4
cycler==0.11.0
cymem==2.0.5
cython==0.29.24
dataclasses==0.8
dataframe-image==0.1.1
datasets==1.12.1
decorator==5.0.9
defusedxml==0.7.1
dill==0.3.4
docker-pycreds==0.4.0
en-core-web-lg==3.1.0
en-core-web-trf==3.1.0
en-ner-bc5cdr-md==0.4.0
en-ner-bionlp13cg-md==0.4.0
entrypoints==0.3
et-xmlfile==1.1.0
filelock==3.0.12
flatbuffers==1.12
fsspec==2021.8.1
gast==0.4.0
gitdb==4.0.7
gitpython==3.1.18
google-auth-oauthlib==0.4.6
google-auth==1.35.0
google-pasta==0.2.0
grpcio==1.40.0
h5py==3.1.0
huggingface-hub==0.1.2
idna-ssl==1.1.0
idna==3.2
immutables==0.16
importlib-metadata==4.6.4
importlib-resources==5.4.0
ipykernel==5.5.5
ipython-genutils==0.2.0
ipython==7.16.1
ipywidgets==7.6.3
jedi==0.18.0
jinja2==3.0.1
joblib==1.0.1
jsonlines==2.0.0
jsonschema==3.2.0
jupyter-client==7.0.1
jupyter-console==6.4.0
jupyter-core==4.7.1
jupyter==1.0.0
jupyterlab-pygments==0.1.2
jupyterlab-widgets==1.0.0
keras-preprocessing==1.1.2
keras==2.6.0
kiwisolver==1.3.1
markdown==3.3.4
markupsafe==2.0.1
matplotlib==3.3.4
mistune==0.8.4
multidict==5.1.0
multiprocess==0.70.12.2
murmurhash==1.0.5
mygene==3.2.2
nbclient==0.5.4
nbconvert==6.0.7
nbformat==5.1.3
nest-asyncio==1.5.1
nltk==3.6.2
notebook==6.4.3
numpy==1.19.5
oauthlib==3.1.1
openpyxl==3.0.7
opt-einsum==3.3.0
packaging==21.0
pandas==1.1.5
pandocfilters==1.4.3
parso==0.8.2
pathtools==0.1.2
pathy==0.6.0
pexpect==4.8.0
pickleshare==0.7.5
pillow==8.3.1
pip==21.3.1
preshed==3.0.5
prometheus-client==0.11.0
promise==2.3
prompt-toolkit==3.0.20
protobuf==3.17.3
psutil==5.8.0
ptyprocess==0.7.0
pyarrow==5.0.0
pyasn1-modules==0.2.8
pyasn1==0.4.8
pycparser==2.20
pydantic==1.8.2
pydeck==0.6.2
pygments==2.10.0
pyparsing==2.4.7
pyrsistent==0.18.0
python-dateutil==2.8.2
pytz-deprecation-shim==0.1.0.post0
pytz==2021.1
pyyaml==5.4.1
pyzmq==22.2.1
qtconsole==5.1.1
qtpy==1.10.0
regex==2021.8.28
requests-oauthlib==1.3.0
requests==2.26.0
rsa==4.7.2
runipy==0.1.5
sacremoses==0.0.45
scikit-learn==0.24.2
scipy==1.5.4
send2trash==1.8.0
sentry-sdk==1.3.1
seqeval==1.2.2
setuptools==58.0.4
shortuuid==1.0.1
six==1.15.0
smart-open==5.2.1
smmap==4.0.0
soupsieve==2.2.1
spacy-alignments==0.8.3
spacy-legacy==3.0.8
spacy-transformers==1.0.6
spacy==3.1.2
srsly==2.4.1
streamlit==0.84.2
subprocess32==3.5.4
tensorboard-data-server==0.6.1
tensorboard-plugin-wit==1.8.0
tensorboard==2.6.0
tensorflow-estimator==2.6.0
tensorflow==2.6.0
termcolor==1.1.0
terminado==0.11.1
testpath==0.5.0
text2digits==0.1.0
thinc==8.0.8
threadpoolctl==2.2.0
tokenizers==0.10.3
toml==0.10.2
toolz==0.11.2
torch==1.9.0
torchaudio==0.9.0
torchvision==0.10.0
tornado==6.1
tqdm==4.62.2
traitlets==4.3.3
transformers==4.12.5
typer==0.3.2
typing-extensions==3.7.4.3
tzdata==2021.5
tzlocal==4.1
unidecode==1.3.2
urllib3==1.26.6
validators==0.18.2
wandb==0.12.9
wasabi==0.8.2
watchdog==2.1.6
wcwidth==0.2.5
webencodings==0.5.1
werkzeug==2.0.1
wheel==0.37.0
widgetsnbextension==3.5.1
wrapt==1.12.1
xlrd==2.0.1
xxhash==2.0.2
yarl==1.6.3
yaspin==2.1.0
zipp==3.5.0