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  1. .gitattributes +2 -32
  2. .gitignore +50 -0
  3. .train_stage1_done +0 -0
  4. Dockerfile +29 -0
  5. Plan.MD +0 -0
  6. README.md +469 -3
  7. configs/awl_config.yaml +13 -0
  8. configs/inference_config.yaml +32 -0
  9. configs/model_config.yaml +35 -0
  10. configs/training_config.yaml +70 -0
  11. configs/training_config_fast.yaml +82 -0
  12. docker-compose.yml +21 -0
  13. graph_codebase.py +859 -0
  14. graphify-out/GRAPH_REPORT.md +252 -0
  15. graphify-out/cost.json +36 -0
  16. graphify-out/graph.html +0 -0
  17. graphify-out/graph.json +0 -0
  18. graphify-out/manifest.json +444 -0
  19. pyproject.toml +42 -0
  20. requirements-dev.txt +9 -0
  21. requirements.txt +59 -0
  22. scripts/download_all_huggingface_datasets.py +61 -0
  23. scripts/download_datasets.sh +31 -0
  24. scripts/download_kaggle_datasets.sh +41 -0
  25. scripts/evaluate.py +85 -0
  26. scripts/preprocess_data.py +206 -0
  27. scripts/pretrain_human_pattern_classifier.py +201 -0
  28. scripts/run_inference.py +59 -0
  29. scripts/train.py +390 -0
  30. src/__init__.py +0 -0
  31. start.sh +123 -0
  32. tests/test_evaluation.py +46 -0
  33. tests/test_model.py +44 -0
  34. tests/test_preprocessing.py +82 -0
  35. tests/test_style.py +47 -0
  36. tests/test_vocabulary.py +38 -0
  37. todo_registry.md +335 -0
  38. train.sh +215 -0
  39. wandb/debug-internal.log +578 -0
  40. wandb/debug.log +24 -0
  41. wandb/run-20260502_165105-pwnhqrrf/run-pwnhqrrf.wandb +0 -0
  42. wandb/run-20260502_165541-4d797dih/run-4d797dih.wandb +0 -0
  43. wandb/run-20260502_201947-ngpyijum/run-ngpyijum.wandb +0 -0
  44. wandb/run-20260502_202439-7n7pnref/run-7n7pnref.wandb +0 -0
  45. wandb/run-20260502_203519-fib23yhh/run-fib23yhh.wandb +0 -0
  46. wandb/run-20260502_210534-j0t4q38m/run-j0t4q38m.wandb +0 -0
  47. wandb/run-20260502_212127-vl8pftkj/run-vl8pftkj.wandb +0 -0
  48. wandb/run-20260502_213822-mmm9bdu9/run-mmm9bdu9.wandb +0 -0
  49. wandb/run-20260503_120130-xzkygl93/run-xzkygl93.wandb +0 -0
  50. wandb/run-20260503_120403-cbb6slr5/run-cbb6slr5.wandb +0 -0
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- *.7z filter=lfs diff=lfs merge=lfs -text
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- *.arrow filter=lfs diff=lfs merge=lfs -text
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  *.bin filter=lfs diff=lfs merge=lfs -text
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- *.parquet filter=lfs diff=lfs merge=lfs -text
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- *.pb filter=lfs diff=lfs merge=lfs -text
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- *.pickle filter=lfs diff=lfs merge=lfs -text
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- *.pkl filter=lfs diff=lfs merge=lfs -text
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  *.pt filter=lfs diff=lfs merge=lfs -text
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- *.pth filter=lfs diff=lfs merge=lfs -text
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- *.rar filter=lfs diff=lfs merge=lfs -text
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  *.safetensors filter=lfs diff=lfs merge=lfs -text
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- saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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- *.tar.* filter=lfs diff=lfs merge=lfs -text
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- *.tar filter=lfs diff=lfs merge=lfs -text
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- *.tflite filter=lfs diff=lfs merge=lfs -text
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- *.tgz filter=lfs diff=lfs merge=lfs -text
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- *.zip filter=lfs diff=lfs merge=lfs -text
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- *.zst filter=lfs diff=lfs merge=lfs -text
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- *tfevents* filter=lfs diff=lfs merge=lfs -text
 
 
 
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  *.bin filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  *.pt filter=lfs diff=lfs merge=lfs -text
 
 
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  *.safetensors filter=lfs diff=lfs merge=lfs -text
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+ *.ckpt filter=lfs diff=lfs merge=lfs -text
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+ checkpoints/** filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
.gitignore ADDED
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+ # Python
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+ __pycache__/
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+ *.py[cod]
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+ *$py.class
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+ *.egg-info/
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+ dist/
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+ build/
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+ *.egg
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+
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+ # Virtual environment
11
+ venv/
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+ .venv/
13
+ env/
14
+
15
+ # IDE
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+ .vscode/
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+ .idea/
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+ *.swp
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+ *.swo
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+
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+ # Data (large files)
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+ data/raw/
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+ data/processed/
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+ !data/awl/
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+
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+ # Model checkpoints
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+ checkpoints/
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+ *.pt
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+ *.pth
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+ *.bin
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+ *.safetensors
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+
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+ # Logs
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+ logs/
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+ wandb/
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+ *.log
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+
38
+ # OS
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+ .DS_Store
40
+ Thumbs.db
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+
42
+ # Jupyter
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+ .ipynb_checkpoints/
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+
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+ # Environment
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+ .env
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+ *.env
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+
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+ # Docker
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+ .dockerignore
.train_stage1_done ADDED
File without changes
Dockerfile ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ FROM python:3.10-slim
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+
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+ # System dependencies
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+ RUN apt-get update && apt-get install -y --no-install-recommends \
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+ git \
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+ curl \
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+ default-jre \
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+ && rm -rf /var/lib/apt/lists/*
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+
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+ WORKDIR /app
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+
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+ # Install Python dependencies
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+ COPY requirements.txt .
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+ RUN pip install --no-cache-dir -r requirements.txt
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+
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+ # Download spaCy model
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+ RUN python -m spacy download en_core_web_trf
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+
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+ # Download NLTK data
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+ RUN python -c "import nltk; nltk.download('punkt'); nltk.download('averaged_perceptron_tagger'); nltk.download('wordnet')"
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+
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+ # Copy application
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+ COPY . .
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+
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+ # Expose API port
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+ EXPOSE 8000
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+
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+ # Default: run the API server
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+ CMD ["uvicorn", "src.api.main:app", "--host", "0.0.0.0", "--port", "8000"]
Plan.MD ADDED
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README.md CHANGED
@@ -1,3 +1,469 @@
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- ---
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- license: apache-2.0
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- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ ---
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+ language:
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+ - en
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+ tags:
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+ - text2text-generation
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+ - dyslexia
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+ - grammar-correction
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+ - style-preservation
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+ - lora
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+ - flan-t5
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+ license: mit
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+ base_model: google/flan-t5-small
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+ datasets:
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+ - cambridge/fce
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+ - wi_locness
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+ - jfleg
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+ pipeline_tag: translation
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+ ---
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+
20
+ # Dyslexia Academic Writing Correction System
21
+
22
+ > **A style-preserving, grammar-correcting, academic vocabulary elevating AI system that corrects dyslectic writing while maintaining the author's personal voice, tone, and authorship signal — not a rewriter, a corrector.**
23
+
24
+ ## Overview
25
+
26
+ This system takes text written by dyslexic students and corrects grammar, spelling, and fluency errors while:
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+
28
+ 1. **Preserving the author's unique writing style** via a 512-dimensional style fingerprint vector
29
+ 2. **Elevating vocabulary to academic register** using Coxhead's Academic Word List (AWL) and BERT-based lexical substitution
30
+ 3. **Resisting AI detection** through a frozen Human Pattern Classifier that penalises AI-typical writing during training
31
+ 4. **Maintaining semantic meaning** with cosine-similarity-based semantic preservation loss
32
+
33
+ The core model is **Google Flan-T5-Small** fine-tuned with **LoRA** (Low-Rank Adaptation), trained on real learner error corpora (FCE, W&I+LOCNESS, JFLEG) augmented with synthetic dyslexia-simulated data.
34
+
35
+ ---
36
+
37
+ ## Features
38
+
39
+ | Feature | Description |
40
+ |---------|-------------|
41
+ | **Two-pass spell correction** | Dyslexia-aware phonetic pattern handling via LanguageTool |
42
+ | **Style fingerprinting** | 41 raw features → MLP → 512-dim L2-normalised style vector |
43
+ | **LoRA fine-tuning** | 1.63% trainable params (1.28M / 78.2M total), rank=8 |
44
+ | **Academic vocabulary elevation** | BERT fill-mask → AWL candidate filtering → semantic similarity gate |
45
+ | **Human pattern anti-AI loss** | Pre-trained frozen MLP classifier (17-dim features including GPT-2 perplexity) |
46
+ | **Combined training loss** | `L_CE + λ₁·L_style + λ₂·L_semantic + λ₃·L_human_pattern` |
47
+ | **Sentence-chunked inference** | Long texts split into 128-token chunks matching training window |
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+ | **FastAPI server** | RESTful `/correct` endpoint with CORS and rate limiting |
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+ | **Multi-stage training** | Orchestrated via `train.sh` with checkpoint system (Skip/Redo/Continue) |
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+ | **Synthetic data augmentation** | `DyslexiaSimulator` generates realistic errors from clean text |
51
+
52
+ ---
53
+
54
+ ## Project Structure
55
+
56
+ ```
57
+ Rewriter/
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+ ├── configs/
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+ │ ├── training_config.yaml # Full training hyperparameters
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+ │ ├── training_config_fast.yaml # Quick iteration config
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+ │ ├── inference_config.yaml # Inference & generation settings
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+ │ ├── model_config.yaml # Model architecture registry
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+ │ └── awl_config.yaml # Academic Word List settings
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+ ├── scripts/
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+ │ ├── train.py # Main training script (Click CLI)
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+ │ ├── evaluate.py # Test set evaluation (GLEU, ERRANT, BERTScore)
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+ │ ├── run_inference.py # Interactive CLI inference
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+ │ ├── preprocess_data.py # Raw datasets → unified JSONL
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+ │ ├── pretrain_human_pattern_classifier.py # Stage 3: anti-AI classifier
70
+ │ ├── download_datasets.sh # BEA-2019 dataset downloader
71
+ │ └── download_kaggle_datasets.sh # Kaggle human/AI data downloader
72
+ ├── src/
73
+ │ ├── model/
74
+ │ │ ├── base_model.py # Model loader (T5/BART/Llama + LoRA + quantization)
75
+ │ │ ├── style_conditioner.py # Prefix tuning: style → virtual tokens
76
+ │ │ ├── generation_utils.py # Beam search, sampling, batch generation
77
+ │ │ └── lora_adapter.py # LoRA configuration helpers
78
+ │ ├── preprocessing/
79
+ │ │ ├── pipeline.py # Full preprocessing orchestrator
80
+ │ │ ├── spell_corrector.py # LanguageTool + dyslexia-aware correction
81
+ │ │ ├── dyslexia_simulator.py # Synthetic error generation (Rello et al.)
82
+ │ │ ├── dependency_parser.py # spaCy dependency tree analysis
83
+ │ │ ├── ner_tagger.py # Named entity protection
84
+ │ │ └── sentence_segmenter.py # Sentence boundary detection
85
+ │ ├── style/
86
+ │ │ ├── fingerprinter.py # 41 features → 512-dim style vector
87
+ │ │ ├── style_vector.py # Style vector dataclass
88
+ │ │ ├── formality_classifier.py # Rule-based formality scoring
89
+ │ │ └── emotion_classifier.py # Emotion detection
90
+ │ ├── training/
91
+ │ │ ├── dataset.py # Pre-tokenized cached dataset with style vectors
92
+ │ │ ├── trainer.py # CorrectionTrainer (HF Trainer + PEFT fixes)
93
+ │ │ ├── loss_functions.py # V1 and V2 combined losses
94
+ │ │ ├── human_pattern_extractor.py # 17-dim feature extraction + classifier
95
+ │ │ └─�� callbacks.py # Evaluation logging callbacks
96
+ │ ├── vocabulary/
97
+ │ │ ├── lexical_substitution.py # BERT fill-mask → AWL substitution pipeline
98
+ │ │ ├── awl_loader.py # Coxhead Academic Word List loader
99
+ │ │ └── register_filter.py # Contraction expansion + colloquial replacement
100
+ │ ├── inference/
101
+ │ │ ├── corrector.py # End-to-end inference pipeline orchestrator
102
+ │ │ └── postprocessor.py # Cleanup, entity restore, formatting
103
+ │ ├── evaluation/
104
+ │ │ ├── gleu_scorer.py # GLEU + BERTScore computation
105
+ │ │ ├── errant_evaluator.py # ERRANT P/R/F0.5 evaluation
106
+ │ │ ├── style_metrics.py # Style similarity + AWL coverage
107
+ │ │ └── authorship_verifier.py # AI detection resistance testing
108
+ │ └── api/
109
+ │ ├── main.py # FastAPI application
110
+ │ ├── schemas.py # Pydantic request/response models
111
+ │ └── middleware.py # Rate limiting + CORS
112
+ ├── data/
113
+ │ ├── raw/ # Original datasets (FCE, W&I+LOCNESS, JFLEG, Kaggle)
114
+ │ ├── processed/ # Unified JSONL (train/val/test splits)
115
+ │ ├── cache/ # Pre-tokenized dataset caches (.pt files)
116
+ │ └── awl/ # Coxhead Academic Word List
117
+ ├── train.sh # Multi-stage training orchestrator
118
+ ├── start.sh # Inference launcher (CLI or API mode)
119
+ ├── Dockerfile # Production container
120
+ ├── docker-compose.yml # Docker deployment
121
+ ├── requirements.txt # Python dependencies
122
+ └── pyproject.toml # Project metadata
123
+ ```
124
+
125
+ ---
126
+
127
+ ## Design Choices & Rationale
128
+
129
+ ### Why Flan-T5-Small?
130
+
131
+ | Consideration | Decision |
132
+ |---------------|----------|
133
+ | **Hardware constraint** | RTX 3050 Laptop GPU (4GB VRAM) — rules out models > 500M params |
134
+ | **Architecture** | Encoder-decoder (seq2seq) is ideal for text-to-text correction tasks |
135
+ | **Instruction tuning** | Flan-T5 is pre-trained on 1,800+ instruction tasks — follows correction prompts naturally |
136
+ | **LoRA efficiency** | Only 1.28M trainable params (1.63%) — fits in 4GB with batch_size=4 + bf16 |
137
+
138
+ ### Why LoRA over Full Fine-Tuning?
139
+
140
+ - **Memory**: Full fine-tuning of T5-Small requires ~2.5GB for gradients alone; LoRA needs ~200MB
141
+ - **Speed**: LoRA converges in 5 epochs (~1,515 steps) on a single RTX 3050
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+ - **Merging**: LoRA weights merge into base model at inference time — zero latency overhead
143
+ - **Configuration**: `r=8, alpha=16, dropout=0.05`, targeting all attention + FFN projections (`q, k, v, o, wi_0, wi_1, wo`)
144
+
145
+ ### Why a Combined Multi-Objective Loss?
146
+
147
+ The system uses a 4-term loss function: `L = L_CE + 0.3·L_style + 0.5·L_semantic + 0.4·L_human`
148
+
149
+ | Term | Purpose | Weight |
150
+ |------|---------|--------|
151
+ | `L_CE` | Standard cross-entropy token prediction | 1.0 |
152
+ | `L_style` | `1 - cos_sim(output_style, input_style)` — preserves writing fingerprint | 0.3 |
153
+ | `L_semantic` | `1 - cos_sim(input_embedding, output_embedding)` — preserves meaning | 0.5 |
154
+ | `L_human` | `1 - HumanPatternClassifier(output)` — penalises AI-like text patterns | 0.4 |
155
+
156
+ **Why these weights?** Style and human-pattern losses are auxiliary signals — too high and they override grammar correction. The semantic loss is weighted highest (0.5) because meaning preservation is the hardest constraint to satisfy.
157
+
158
+ ### Why a Human Pattern Classifier?
159
+
160
+ AI-generated text has detectable statistical signatures:
161
+ - **Lower GPT-2 perplexity** (AI text is more "predictable")
162
+ - **Lower burstiness** (AI has uniform sentence lengths; humans vary)
163
+ - **Higher AI marker density** (overuse of "delve", "leverage", "furthermore")
164
+ - **Lower n-gram novelty** (AI reuses phrases more)
165
+
166
+ The classifier is a 3-layer MLP (17→128→64→1) pre-trained on ~100k samples from two Kaggle datasets (Shanegerami AI_Human.csv + Starblasters8), then **frozen** during main training. Its output score (0=AI, 1=human) is used as a reward signal.
167
+
168
+ ### Why Sentence-Chunked Inference?
169
+
170
+ The model was trained with `max_input_length=128` tokens. The task prefix alone consumes ~40 tokens, leaving ~86 tokens for actual text. Long inputs are:
171
+
172
+ 1. Split into sentences using spaCy
173
+ 2. Grouped into chunks that fit the 128-token budget
174
+ 3. Each chunk is corrected independently
175
+ 4. Results are joined back together
176
+
177
+ This prevents the model from seeing out-of-distribution input lengths and avoids truncation artifacts.
178
+
179
+ ### Why Post-Generation Vocabulary Elevation?
180
+
181
+ Rather than relying solely on the model to produce academic vocabulary (which T5-Small lacks the capacity for), we apply a separate **BERT-based lexical substitution** pipeline:
182
+
183
+ 1. POS-tag the output with spaCy
184
+ 2. Identify non-AWL content words (nouns, verbs, adjectives, adverbs)
185
+ 3. Mask each candidate → run BERT fill-mask → filter to AWL-only predictions
186
+ 4. Accept substitution only if `semantic_similarity > 0.82` (measured with `all-mpnet-base-v2`)
187
+ 5. Track used substitutions to prevent duplicate replacements
188
+
189
+ ---
190
+
191
+ ## Quick Start
192
+
193
+ ### Prerequisites
194
+
195
+ - Python ≥ 3.10
196
+ - NVIDIA GPU with ≥ 4GB VRAM (or CPU, slower)
197
+ - ~10GB disk space for models and datasets
198
+
199
+ ### Option A: Automated Training Pipeline
200
+
201
+ ```bash
202
+ # Clone and setup
203
+ git clone https://huggingface.co/morpheuslord/rewriter && cd rewriter
204
+ pip install -r requirements.txt
205
+
206
+ # Set W&B key (optional, for experiment tracking)
207
+ export WANDB_API_KEY="your-key-here"
208
+
209
+ # Run the full 5-stage pipeline
210
+ bash train.sh
211
+ ```
212
+
213
+ The orchestrator handles: **Setup → Preprocessing → Human Pattern Pre-training → Model Training → Evaluation**
214
+
215
+ Each stage has a checkpoint system — if interrupted, re-run `train.sh` and select `[S]kip` for completed stages.
216
+
217
+ ### Option B: Manual Step-by-Step
218
+
219
+ ```bash
220
+ # 1. Install dependencies
221
+ pip install -r requirements.txt
222
+ python -m spacy download en_core_web_sm
223
+
224
+ # 2. Preprocess datasets (FCE, W&I+LOCNESS, JFLEG → unified JSONL)
225
+ python scripts/preprocess_data.py
226
+
227
+ # 3. Pre-train the human pattern classifier
228
+ python scripts/pretrain_human_pattern_classifier.py
229
+
230
+ # 4. Train the correction model
231
+ PYTHONPATH=. python scripts/train.py --config configs/training_config.yaml --use-v2-loss
232
+
233
+ # 5. Merge LoRA adapter into base model for inference
234
+ python -c "
235
+ from peft import PeftModel
236
+ from transformers import AutoModelForSeq2SeqLM, AutoTokenizer
237
+ import torch
238
+ model = AutoModelForSeq2SeqLM.from_pretrained('google/flan-t5-small', torch_dtype=torch.bfloat16)
239
+ model = PeftModel.from_pretrained(model, 'checkpoints/checkpoint-BEST')
240
+ model = model.merge_and_unload()
241
+ model.save_pretrained('checkpoints/best_model_merged')
242
+ AutoTokenizer.from_pretrained('google/flan-t5-small').save_pretrained('checkpoints/best_model_merged')
243
+ "
244
+
245
+ # 6. Run inference
246
+ PYTHONPATH=. python scripts/run_inference.py --text "The studnet recieved alot of informtion."
247
+
248
+ # 7. Or start the API server
249
+ PYTHONPATH=. python -m uvicorn src.api.main:app --host 0.0.0.0 --port 8000
250
+ ```
251
+
252
+ ---
253
+
254
+ ## Training Pipeline (5 Stages)
255
+
256
+ ### Stage 1: Setup & Dependencies
257
+ Installs Python packages, downloads spaCy models (`en_core_web_sm`), and NLTK tokenizers.
258
+
259
+ ### Stage 2: Data Preprocessing
260
+ Converts raw datasets into unified JSONL format:
261
+
262
+ | Dataset | Source | Format | Pairs |
263
+ |---------|--------|--------|-------|
264
+ | **FCE v2.1** | BEA-2019 Shared Task | Character-level edits | ~28k |
265
+ | **W&I+LOCNESS v2.1** | BEA-2019 Shared Task | Character-level edits | ~34k |
266
+ | **JFLEG** | Johns Hopkins | 4 reference corrections per source | ~5k |
267
+
268
+ Output schema: `{"input": "erroneous text", "target": "corrected text", "source": "fce|wi_locness|jfleg"}`
269
+
270
+ Split: 90% train / 10% validation (with 50% of validation used as test, capped at 500).
271
+
272
+ ### Stage 3: Human Pattern Classifier Pre-Training
273
+ Trains a frozen binary MLP classifier on ~100k human vs AI text samples. Uses 17 features:
274
+
275
+ ```
276
+ [perplexity, burstiness, sentence_starter_diversity,
277
+ bigram_novelty, trigram_novelty, 4gram_novelty,
278
+ ai_marker_density, overused_discourse_density,
279
+ em_dash_rate, ellipsis_rate, comma_rate, semicolon_rate,
280
+ word_count, sentence_count, mean_sent_length, std_sent_length, ttr]
281
+ ```
282
+
283
+ GPT-2 perplexity is computed in batched GPU forward passes. Text features are extracted in parallel via `ProcessPoolExecutor`.
284
+
285
+ ### Stage 4: Main Model Training
286
+ Fine-tunes Flan-T5-Small with LoRA using the V2 combined loss. Key hyperparameters:
287
+
288
+ | Parameter | Value |
289
+ |-----------|-------|
290
+ | Effective batch size | 32 (4 × 8 gradient accumulation) |
291
+ | Learning rate | 3e-4 (cosine schedule, 5% warmup) |
292
+ | Precision | bf16 (Ampere+ GPUs) |
293
+ | Max input tokens | 128 |
294
+ | Max target tokens | 128 |
295
+ | Epochs | 5 |
296
+ | Eval/Save interval | Every 100 steps |
297
+
298
+ ### Stage 5: Evaluation
299
+ Runs on test set with metrics: GLEU, BERTScore F1, ERRANT F0.5, Style Similarity, AWL Coverage.
300
+
301
+ ---
302
+
303
+ ## Inference Pipeline (7 Steps)
304
+
305
+ ```
306
+ Raw Text
307
+
308
+
309
+ 1. Preprocessing ─────── LanguageTool spell correction + spaCy parsing
310
+
311
+
312
+ 2. Style Fingerprinting ─ Extract 41 features → MLP → 512-dim vector
313
+
314
+
315
+ 3. Sentence-Chunked Generation ─ Split into 128-token chunks → Flan-T5 → rejoin
316
+
317
+
318
+ 4. Post-Processing ───── Remove artifacts, replace em dashes, fix spacing
319
+
320
+
321
+ 5. Vocabulary Elevation ─ BERT fill-mask → AWL filtering → semantic gate
322
+
323
+
324
+ 6. Register Filtering ── Expand contractions, replace colloquialisms
325
+
326
+
327
+ 7. Metrics ──────────── Style similarity, AWL coverage, readability scores
328
+
329
+
330
+ Corrected Text
331
+ ```
332
+
333
+ ---
334
+
335
+ ## Configuration Reference
336
+
337
+ ### `configs/training_config.yaml`
338
+
339
+ ```yaml
340
+ model:
341
+ key: "flan-t5-small" # flan-t5-xl | flan-t5-large | flan-t5-base | flan-t5-small
342
+ quantize: false # 4-bit NF4 quantization (needs GPU)
343
+ use_lora: true # Parameter-efficient fine-tuning
344
+
345
+ lora:
346
+ r: 8 # LoRA rank (higher = more capacity, more VRAM)
347
+ lora_alpha: 16 # Scaling factor (usually 2×r)
348
+ lora_dropout: 0.05 # Regularisation
349
+ target_modules: [q, v, k, o, wi_0, wi_1, wo] # All attention + FFN layers
350
+
351
+ training:
352
+ per_device_train_batch_size: 4
353
+ gradient_accumulation_steps: 8 # Effective batch = 32
354
+ learning_rate: 3.0e-4
355
+ lr_scheduler_type: cosine
356
+ bf16: true # Use bfloat16 on Ampere+ GPUs
357
+
358
+ loss:
359
+ lambda_style: 0.3 # Style preservation weight
360
+ lambda_semantic: 0.5 # Meaning preservation weight
361
+ lambda_human_pattern: 0.4 # Anti-AI penalty weight
362
+ ```
363
+
364
+ ### `configs/inference_config.yaml`
365
+
366
+ ```yaml
367
+ model:
368
+ key: "flan-t5-small"
369
+ checkpoint_path: "checkpoints/best_model_merged"
370
+ use_lora: false # Merged model — no adapter needed
371
+
372
+ generation:
373
+ num_beams: 5 # Beam search width
374
+ length_penalty: 1.2 # > 1.0 rewards longer outputs
375
+ no_repeat_ngram_size: 3 # Prevents repetition
376
+ max_new_tokens: 128 # Must match training max_target_length
377
+
378
+ vocabulary:
379
+ semantic_threshold: 0.82 # Minimum cosine similarity for AWL substitution
380
+ ```
381
+
382
+ ---
383
+
384
+ ## API Usage
385
+
386
+ ```bash
387
+ # Start the server
388
+ PYTHONPATH=. python -m uvicorn src.api.main:app --host 0.0.0.0 --port 8000
389
+
390
+ # Correct text
391
+ curl -X POST http://localhost:8000/correct \
392
+ -H "Content-Type: application/json" \
393
+ -d '{"text": "The studnet recieved alot of informtion.", "style_alpha": 0.6}'
394
+
395
+ # Health check
396
+ curl http://localhost:8000/health
397
+ ```
398
+
399
+ Interactive docs available at `http://localhost:8000/docs`.
400
+
401
+ ---
402
+
403
+ ## Hardware Requirements
404
+
405
+ | Tier | GPU | Model | Training Time |
406
+ |------|-----|-------|---------------|
407
+ | **Tested** | RTX 3050 4GB | Flan-T5-Small + LoRA | ~45 min (5 epochs) |
408
+ | Recommended | RTX 3090 24GB | Flan-T5-Base + LoRA | ~2h |
409
+ | Maximum | A100 80GB | Flan-T5-XL + LoRA | ~12h |
410
+
411
+ CPU inference is supported but significantly slower (~30s per correction vs ~2s on GPU).
412
+
413
+ ---
414
+
415
+ ## Data Sources
416
+
417
+ | Dataset | Type | Size | Source |
418
+ |---------|------|------|--------|
419
+ | FCE v2.1 | Learner errors + corrections | ~28k pairs | Cambridge English |
420
+ | W&I+LOCNESS v2.1 | Learner errors + corrections | ~34k pairs | BEA-2019 Shared Task |
421
+ | JFLEG | Fluency corrections (4 refs) | ~5k pairs | Johns Hopkins |
422
+ | Shanegerami AI_Human.csv | Human vs AI classification | ~50k samples | Kaggle |
423
+ | Starblasters8 data.parquet | Human vs AI classification | ~50k samples | Kaggle |
424
+ | Coxhead AWL | Academic Word List | 570 families / 549 headwords | Victoria University |
425
+
426
+ ---
427
+
428
+ ## Dyslexia Error Simulation
429
+
430
+ The `DyslexiaSimulator` generates synthetic training data based on research by Rello et al. (2013, 2017):
431
+
432
+ | Error Type | Frequency | Example |
433
+ |-----------|-----------|---------|
434
+ | Phonetic substitution | 35% | "because" → "becaus" |
435
+ | Letter transposition | 18% | "the" → "teh" |
436
+ | Letter omission | 16% | "important" → "importnt" |
437
+ | Letter doubling | 12% | "letter" → "lettter" |
438
+ | Letter reversal (b/d, p/q) | 10% | "bad" → "dad" |
439
+ | Word boundary errors | 9% | "a lot" → "alot" |
440
+
441
+ ---
442
+
443
+ ## Style Fingerprint Vector
444
+
445
+ The 512-dimensional style vector captures 41 raw features:
446
+
447
+ | Group | Features | Count |
448
+ |-------|----------|-------|
449
+ | Sentence stats | mean, std, skew of sentence lengths | 3 |
450
+ | Word stats | mean, std of word lengths | 2 |
451
+ | Lexical | type-token ratio, lexical density | 2 |
452
+ | Syntactic | passive/active voice ratio, subordinate clause ratio, avg dependency tree depth | 4 |
453
+ | Discourse | 20 academic discourse markers (per 100 words) | 20 |
454
+ | Register | hedging frequency, formality score, nominalization ratio | 3 |
455
+ | Readability | Flesch reading ease, avg syllables per word | 2 |
456
+ | Pronouns | first-person ratio, third-person ratio | 2 |
457
+ | Other | question ratio, exclamation ratio, AWL coverage | 3 |
458
+
459
+ These are projected through a 2-layer MLP (`41 → 256 → 512`) with LayerNorm and GELU activation, then L2-normalised.
460
+
461
+ ---
462
+
463
+ ## Known Limitations
464
+
465
+ 1. **Model capacity**: Flan-T5-Small (77M params) has limited correction ability compared to larger models
466
+ 2. **Training window**: 128-token max input means very long sentences may be split mid-clause
467
+ 3. **Vocabulary elevation**: BERT fill-mask can suggest semantically inappropriate AWL words; the similarity threshold (0.82) is a trade-off between coverage and accuracy
468
+ 4. **Already-correct text**: The model is trained on error→correction pairs; feeding it clean text produces unpredictable output
469
+ 5. **LanguageTool latency**: Spell correction takes ~15-20s due to JVM startup on first call
configs/awl_config.yaml ADDED
@@ -0,0 +1,13 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ awl:
2
+ primary: "data/awl/coxhead_awl.txt"
3
+ supplementary:
4
+ - "data/awl/domain_lexicons/humanities.txt"
5
+ - "data/awl/domain_lexicons/sciences.txt"
6
+ - "data/awl/domain_lexicons/social_sciences.txt"
7
+ academic_synonyms: "data/awl/academic_synonyms.json"
8
+
9
+ register:
10
+ expand_contractions: true
11
+ replace_colloquialisms: true
12
+ enforce_third_person_academic: false # Keep user's voice (don't force "one")
13
+ minimum_formality_score: 0.65
configs/inference_config.yaml ADDED
@@ -0,0 +1,32 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ model:
2
+ key: "flan-t5-small"
3
+ checkpoint_path: "checkpoints/best_model_merged"
4
+ quantize: false
5
+ use_lora: false # Merged model — no adapter needed
6
+ model_hidden_dim: 512
7
+
8
+ style_conditioner:
9
+ style_dim: 512
10
+ n_prefix_tokens: 10
11
+
12
+ generation:
13
+ num_beams: 5
14
+ length_penalty: 1.2
15
+ no_repeat_ngram_size: 3
16
+ min_length: 5
17
+ max_new_tokens: 128
18
+ early_stopping: true
19
+ temperature: 0.7
20
+ do_sample: false
21
+
22
+ vocabulary:
23
+ awl_path: "data/awl/coxhead_awl.txt"
24
+ mlm_model: "bert-large-uncased"
25
+ sem_model: "all-mpnet-base-v2"
26
+ semantic_threshold: 0.82
27
+
28
+ api:
29
+ host: "0.0.0.0"
30
+ port: 8000
31
+ workers: 1
32
+ reload: false
configs/model_config.yaml ADDED
@@ -0,0 +1,35 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ model:
2
+ key: "flan-t5-xl"
3
+ checkpoint_path: "checkpoints/best_model"
4
+ quantize: false
5
+ use_lora: true
6
+ model_hidden_dim: 2048 # flan-t5-xl hidden size
7
+ # model_hidden_dim: 1024 # flan-t5-large
8
+ # model_hidden_dim: 1024 # bart-large
9
+ # model_hidden_dim: 4096 # llama-3.1-8b
10
+
11
+ style_conditioner:
12
+ style_dim: 512
13
+ n_prefix_tokens: 10
14
+
15
+ fingerprinter:
16
+ spacy_model: "en_core_web_trf"
17
+ awl_path: "data/awl/coxhead_awl.txt"
18
+ projection_hidden_dim: 256
19
+ projection_output_dim: 512
20
+
21
+ generation:
22
+ num_beams: 5
23
+ length_penalty: 1.0
24
+ no_repeat_ngram_size: 3
25
+ min_length: 10
26
+ max_new_tokens: 512
27
+ early_stopping: true
28
+ temperature: 0.7 # Slight randomness for naturalness
29
+ do_sample: false # Beam search by default
30
+
31
+ vocabulary:
32
+ awl_path: "data/awl/coxhead_awl.txt"
33
+ mlm_model: "bert-large-uncased"
34
+ sem_model: "all-mpnet-base-v2"
35
+ semantic_threshold: 0.82
configs/training_config.yaml ADDED
@@ -0,0 +1,70 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ model:
2
+ key: "flan-t5-small" # flan-t5-xl | flan-t5-large | flan-t5-base | flan-t5-small | bart-large | llama-3.1-8b
3
+ quantize: false
4
+ use_lora: true
5
+
6
+ lora:
7
+ r: 8
8
+ lora_alpha: 16
9
+ lora_dropout: 0.05
10
+ target_modules: ["q", "v", "k", "o", "wi_0", "wi_1", "wo"]
11
+
12
+ data:
13
+ train_path: "data/processed/train.jsonl"
14
+ val_path: "data/processed/val.jsonl"
15
+ test_path: "data/processed/test.jsonl"
16
+ max_input_length: 128
17
+ max_target_length: 128
18
+ augment_synthetic: true
19
+ synthetic_ratio: 0.3
20
+
21
+ training:
22
+ output_dir: "checkpoints/"
23
+ num_train_epochs: 5
24
+ per_device_train_batch_size: 4 # T5-Small in bf16 fits batch=4 in 4GB VRAM
25
+ per_device_eval_batch_size: 8
26
+ gradient_accumulation_steps: 8 # Effective batch = 4*8 = 32
27
+ learning_rate: 3.0e-4
28
+ lr_scheduler_type: "cosine"
29
+ warmup_ratio: 0.05
30
+ weight_decay: 0.01
31
+ fp16: false
32
+ bf16: true # Use bfloat16 on Ampere+ GPUs
33
+ evaluation_strategy: "steps"
34
+ eval_steps: 100
35
+ save_strategy: "steps"
36
+ save_steps: 100
37
+ save_total_limit: 3
38
+ load_best_model_at_end: true
39
+ metric_for_best_model: "eval_loss"
40
+ greater_is_better: false
41
+ logging_dir: "logs/"
42
+ logging_steps: 25
43
+ report_to: ["wandb", "tensorboard"]
44
+ dataloader_num_workers: 0 # Python 3.14 forkserver breaks with workers > 0
45
+ seed: 42
46
+ push_to_hub: false
47
+
48
+ loss:
49
+ lambda_style: 0.3
50
+ lambda_semantic: 0.5
51
+ lambda_human_pattern: 0.4 # Human pattern reward weight
52
+ sem_model_name: "all-mpnet-base-v2"
53
+
54
+ generation:
55
+ num_beams: 5
56
+ length_penalty: 1.0
57
+ no_repeat_ngram_size: 3
58
+ min_length: 10
59
+ max_new_tokens: 512
60
+ early_stopping: true
61
+
62
+ human_pattern:
63
+ classifier_path: "checkpoints/human_pattern_classifier.pt"
64
+ shanegerami_path: "data/raw/shanegerami/AI_Human.csv"
65
+ starblasters_path: "data/raw/starblasters8/data.parquet"
66
+ max_samples_per_source: 50000
67
+ pretrain_epochs: 20
68
+ pretrain_lr: 1.0e-3
69
+ pretrain_batch_size: 512
70
+ target_auc: 0.88
configs/training_config_fast.yaml ADDED
@@ -0,0 +1,82 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # ═══════════════════════════════════════════════════════════════════════════
2
+ # training_config_fast.yaml — Optimised for RTX 3050 (4GB) + T5-Small
3
+ # ═══════════════════════════════════════════════════════════════════════════
4
+ # Usage: python scripts/train.py --config configs/training_config_fast.yaml
5
+ #
6
+ # Compared to training_config.yaml, this config:
7
+ # - Uses T5-Small (77M params vs 248M for Base)
8
+ # - Lower LoRA rank for fewer trainable params
9
+ # - Larger batch + less accumulation for throughput
10
+ # - More epochs since each is fast
11
+ # - More frequent logging/eval for tighter feedback loop
12
+
13
+ model:
14
+ key: "flan-t5-small"
15
+ quantize: false
16
+ use_lora: true
17
+
18
+ lora:
19
+ r: 8
20
+ lora_alpha: 16
21
+ lora_dropout: 0.05
22
+ target_modules: ["q", "v", "k", "o", "wi_0", "wi_1", "wo"]
23
+
24
+ data:
25
+ train_path: "data/processed/train.jsonl"
26
+ val_path: "data/processed/val.jsonl"
27
+ test_path: "data/processed/test.jsonl"
28
+ max_input_length: 128
29
+ max_target_length: 128
30
+ augment_synthetic: true
31
+ synthetic_ratio: 0.3
32
+
33
+ training:
34
+ output_dir: "checkpoints/"
35
+ num_train_epochs: 5
36
+ per_device_train_batch_size: 4
37
+ per_device_eval_batch_size: 8
38
+ gradient_accumulation_steps: 8 # Effective batch = 32
39
+ learning_rate: 3.0e-4
40
+ lr_scheduler_type: "cosine"
41
+ warmup_ratio: 0.05
42
+ weight_decay: 0.01
43
+ fp16: false
44
+ bf16: true
45
+ evaluation_strategy: "steps"
46
+ eval_steps: 100
47
+ save_strategy: "steps"
48
+ save_steps: 100
49
+ save_total_limit: 3
50
+ load_best_model_at_end: true
51
+ metric_for_best_model: "eval_loss"
52
+ greater_is_better: false
53
+ logging_dir: "logs/"
54
+ logging_steps: 25
55
+ report_to: ["tensorboard"] # Skip W&B for max speed
56
+ dataloader_num_workers: 0 # Python 3.14 forkserver breaks with workers > 0
57
+ seed: 42
58
+ push_to_hub: false
59
+
60
+ loss:
61
+ lambda_style: 0.3
62
+ lambda_semantic: 0.5
63
+ lambda_human_pattern: 0.4
64
+ sem_model_name: "all-mpnet-base-v2"
65
+
66
+ generation:
67
+ num_beams: 5
68
+ length_penalty: 1.0
69
+ no_repeat_ngram_size: 3
70
+ min_length: 10
71
+ max_new_tokens: 512
72
+ early_stopping: true
73
+
74
+ human_pattern:
75
+ classifier_path: "checkpoints/human_pattern_classifier.pt"
76
+ shanegerami_path: "data/raw/shanegerami/AI_Human.csv"
77
+ starblasters_path: "data/raw/starblasters8/data.parquet"
78
+ max_samples_per_source: 50000
79
+ pretrain_epochs: 20
80
+ pretrain_lr: 1.0e-3
81
+ pretrain_batch_size: 512
82
+ target_auc: 0.88
docker-compose.yml ADDED
@@ -0,0 +1,21 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ version: "3.8"
2
+
3
+ services:
4
+ api:
5
+ build: .
6
+ ports:
7
+ - "8000:8000"
8
+ volumes:
9
+ - ./configs:/app/configs
10
+ - ./data:/app/data
11
+ - ./checkpoints:/app/checkpoints
12
+ environment:
13
+ - CUDA_VISIBLE_DEVICES=0
14
+ deploy:
15
+ resources:
16
+ reservations:
17
+ devices:
18
+ - driver: nvidia
19
+ count: 1
20
+ capabilities: [gpu]
21
+ restart: unless-stopped
graph_codebase.py ADDED
@@ -0,0 +1,859 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/usr/bin/env python3
2
+ """
3
+ graphify_rebuild.py — One-shot NudR knowledge graph regeneration.
4
+
5
+ Usage:
6
+ python graphify_rebuild.py # Full rebuild
7
+ python graphify_rebuild.py --watch # Watch mode (rebuilds on file change)
8
+ python graphify_rebuild.py --quick # Skip semantic, AST-only rebuild
9
+
10
+ Outputs (all in graphify-out/):
11
+ GRAPH_REPORT.md — Full community/audit report
12
+ graph.html — Interactive force-directed graph (open in browser)
13
+ graph.json — Raw graph data for tooling
14
+ manifest.json — File hashes for incremental re-runs
15
+ cost.json — Token usage tracking
16
+ """
17
+ import sys, io, os, json, ast, hashlib, time, argparse
18
+ from pathlib import Path
19
+ from datetime import datetime, timezone
20
+
21
+ # Fix Windows console encoding
22
+ if sys.platform == 'win32':
23
+ sys.stdout = io.TextIOWrapper(sys.stdout.buffer, encoding='utf-8', errors='replace')
24
+ sys.stderr = io.TextIOWrapper(sys.stderr.buffer, encoding='utf-8', errors='replace')
25
+
26
+ # ─── Configuration ───────────────────────────────────────────────────────────
27
+ ROOT = Path(__file__).parent
28
+ OUT_DIR = ROOT / 'graphify-out'
29
+ CACHE_DIR = OUT_DIR / 'cache'
30
+ MANIFEST = OUT_DIR / 'manifest.json'
31
+ REPORT_PATH = OUT_DIR / 'GRAPH_REPORT.md'
32
+ HTML_PATH = OUT_DIR / 'graph.html'
33
+ JSON_PATH = OUT_DIR / 'graph.json'
34
+ COST_PATH = OUT_DIR / 'cost.json'
35
+
36
+ # Directories and patterns to skip
37
+ SKIP_DIRS = {
38
+ '.git', '.venv', 'venv', 'node_modules', '__pycache__', '.mypy_cache',
39
+ '.pytest_cache', '.graphify', 'graphify-out', '.terraform', '.idea',
40
+ 'env', 'dist', 'build', 'egg-info', '.tox', '.ruff_cache',
41
+ }
42
+ SKIP_EXTENSIONS = {'.pyc', '.pyo', '.whl', '.egg', '.so', '.dll', '.exe'}
43
+
44
+ # File types for AST extraction
45
+ AST_EXTENSIONS = {'.py'}
46
+
47
+ # File types for corpus (semantic awareness)
48
+ CORPUS_EXTENSIONS = {
49
+ '.py', '.md', '.txt', '.html', '.css', '.js', '.ts', '.json',
50
+ '.yaml', '.yml', '.toml', '.cfg', '.ini', '.proto', '.tf', '.tfvars',
51
+ }
52
+
53
+
54
+ # ─── Step 1: Detect files ────────────────────────────────────────────────────
55
+ def detect_files():
56
+ """Walk the project and return list of relevant files with metadata."""
57
+ files = []
58
+ total_words = 0
59
+ for dirpath, dirnames, filenames in os.walk(ROOT):
60
+ # Prune skipped directories
61
+ dirnames[:] = [d for d in dirnames if d not in SKIP_DIRS]
62
+ for fname in filenames:
63
+ fpath = Path(dirpath) / fname
64
+ ext = fpath.suffix.lower()
65
+ if ext in SKIP_EXTENSIONS:
66
+ continue
67
+ rel = fpath.relative_to(ROOT)
68
+ if any(part.startswith('.') for part in rel.parts[:-1]):
69
+ continue
70
+ try:
71
+ mtime = fpath.stat().st_mtime
72
+ size = fpath.stat().st_size
73
+ except OSError:
74
+ continue
75
+ if ext in CORPUS_EXTENSIONS and size < 5_000_000:
76
+ try:
77
+ content = fpath.read_text(encoding='utf-8', errors='ignore')
78
+ word_count = len(content.split())
79
+ total_words += word_count
80
+ except Exception:
81
+ word_count = 0
82
+ else:
83
+ word_count = 0
84
+ files.append({
85
+ 'path': str(rel),
86
+ 'ext': ext,
87
+ 'mtime': mtime,
88
+ 'size': size,
89
+ 'words': word_count,
90
+ })
91
+ return files, total_words
92
+
93
+
94
+ def get_changed_files(files):
95
+ """Compare against manifest to find changed files."""
96
+ if MANIFEST.exists():
97
+ old_manifest = json.loads(MANIFEST.read_text(encoding='utf-8'))
98
+ else:
99
+ old_manifest = {}
100
+ changed = []
101
+ for f in files:
102
+ old_mtime = old_manifest.get(f['path'])
103
+ if old_mtime is None or f['mtime'] != old_mtime:
104
+ changed.append(f)
105
+ return changed
106
+
107
+
108
+ # ─── Step 2: AST Extraction ──────────────────────────────────────────────────
109
+ def hash_file(path):
110
+ """SHA-256 hash for cache keying."""
111
+ h = hashlib.sha256()
112
+ try:
113
+ h.update(Path(path).read_bytes())
114
+ except Exception:
115
+ h.update(path.encode())
116
+ return h.hexdigest()
117
+
118
+
119
+ def extract_ast_file(filepath):
120
+ """Extract AST nodes and edges from a single Python file."""
121
+ nodes = []
122
+ edges = []
123
+ rel = str(filepath.relative_to(ROOT))
124
+ file_id = rel.replace('\\', '_').replace('/', '_').replace('.', '_')
125
+
126
+ try:
127
+ source = filepath.read_text(encoding='utf-8', errors='ignore')
128
+ tree = ast.parse(source, filename=str(filepath))
129
+ except SyntaxError:
130
+ return nodes, edges
131
+
132
+ # File-level node
133
+ nodes.append({
134
+ 'id': file_id,
135
+ 'label': filepath.name,
136
+ 'file_type': 'code',
137
+ 'source_file': rel,
138
+ })
139
+
140
+ # Extract module-level docstring
141
+ docstring = ast.get_docstring(tree)
142
+ if docstring and len(docstring) > 20:
143
+ doc_id = f"{file_id}_docstring"
144
+ nodes.append({
145
+ 'id': doc_id,
146
+ 'label': docstring[:80],
147
+ 'file_type': 'rationale',
148
+ 'source_file': rel,
149
+ })
150
+ edges.append({
151
+ 'source': file_id, 'target': doc_id,
152
+ 'relation': 'has_rationale',
153
+ 'confidence': 'EXTRACTED', 'confidence_score': 1.0,
154
+ 'source_file': rel, 'weight': 0.5,
155
+ })
156
+
157
+ for node in ast.walk(tree):
158
+ if isinstance(node, (ast.FunctionDef, ast.AsyncFunctionDef)):
159
+ func_id = f"{file_id}_{node.name}"
160
+ label = f"{node.name}()"
161
+ nodes.append({
162
+ 'id': func_id,
163
+ 'label': label,
164
+ 'file_type': 'code',
165
+ 'source_file': rel,
166
+ 'source_location': f"line {node.lineno}",
167
+ })
168
+ edges.append({
169
+ 'source': file_id, 'target': func_id,
170
+ 'relation': 'defines',
171
+ 'confidence': 'EXTRACTED', 'confidence_score': 1.0,
172
+ 'source_file': rel, 'weight': 1.0,
173
+ })
174
+
175
+ # Function docstring
176
+ fdoc = ast.get_docstring(node)
177
+ if fdoc and len(fdoc) > 20:
178
+ fdoc_id = f"{func_id}_doc"
179
+ nodes.append({
180
+ 'id': fdoc_id,
181
+ 'label': fdoc[:80],
182
+ 'file_type': 'rationale',
183
+ 'source_file': rel,
184
+ 'source_location': f"line {node.lineno}",
185
+ })
186
+ edges.append({
187
+ 'source': func_id, 'target': fdoc_id,
188
+ 'relation': 'has_rationale',
189
+ 'confidence': 'EXTRACTED', 'confidence_score': 1.0,
190
+ 'source_file': rel, 'weight': 0.5,
191
+ })
192
+
193
+ # Calls inside functions
194
+ for child in ast.walk(node):
195
+ if isinstance(child, ast.Call):
196
+ callee = _get_call_name(child)
197
+ if callee:
198
+ edges.append({
199
+ 'source': func_id,
200
+ 'target': callee,
201
+ 'relation': 'calls',
202
+ 'confidence': 'INFERRED', 'confidence_score': 0.7,
203
+ 'source_file': rel, 'weight': 0.8,
204
+ })
205
+
206
+ elif isinstance(node, ast.ClassDef):
207
+ class_id = f"{file_id}_{node.name}"
208
+ nodes.append({
209
+ 'id': class_id,
210
+ 'label': node.name,
211
+ 'file_type': 'code',
212
+ 'source_file': rel,
213
+ 'source_location': f"line {node.lineno}",
214
+ })
215
+ edges.append({
216
+ 'source': file_id, 'target': class_id,
217
+ 'relation': 'defines',
218
+ 'confidence': 'EXTRACTED', 'confidence_score': 1.0,
219
+ 'source_file': rel, 'weight': 1.0,
220
+ })
221
+
222
+ # Class docstring
223
+ cdoc = ast.get_docstring(node)
224
+ if cdoc and len(cdoc) > 20:
225
+ cdoc_id = f"{class_id}_doc"
226
+ nodes.append({
227
+ 'id': cdoc_id,
228
+ 'label': cdoc[:80],
229
+ 'file_type': 'rationale',
230
+ 'source_file': rel,
231
+ 'source_location': f"line {node.lineno}",
232
+ })
233
+ edges.append({
234
+ 'source': class_id, 'target': cdoc_id,
235
+ 'relation': 'has_rationale',
236
+ 'confidence': 'EXTRACTED', 'confidence_score': 1.0,
237
+ 'source_file': rel, 'weight': 0.5,
238
+ })
239
+
240
+ # Base classes
241
+ for base in node.bases:
242
+ base_name = _get_name(base)
243
+ if base_name:
244
+ edges.append({
245
+ 'source': class_id, 'target': base_name,
246
+ 'relation': 'inherits',
247
+ 'confidence': 'EXTRACTED', 'confidence_score': 1.0,
248
+ 'source_file': rel, 'weight': 1.0,
249
+ })
250
+
251
+ elif isinstance(node, ast.Import):
252
+ for alias in node.names:
253
+ edges.append({
254
+ 'source': file_id, 'target': alias.name,
255
+ 'relation': 'imports',
256
+ 'confidence': 'EXTRACTED', 'confidence_score': 1.0,
257
+ 'source_file': rel, 'weight': 0.6,
258
+ })
259
+
260
+ elif isinstance(node, ast.ImportFrom) and node.module:
261
+ edges.append({
262
+ 'source': file_id, 'target': node.module,
263
+ 'relation': 'imports',
264
+ 'confidence': 'EXTRACTED', 'confidence_score': 1.0,
265
+ 'source_file': rel, 'weight': 0.6,
266
+ })
267
+
268
+ return nodes, edges
269
+
270
+
271
+ def _get_call_name(node):
272
+ """Extract callable name from ast.Call node."""
273
+ if isinstance(node.func, ast.Name):
274
+ return node.func.id
275
+ elif isinstance(node.func, ast.Attribute):
276
+ return node.func.attr
277
+ return None
278
+
279
+
280
+ def _get_name(node):
281
+ """Extract name from various AST node types."""
282
+ if isinstance(node, ast.Name):
283
+ return node.id
284
+ elif isinstance(node, ast.Attribute):
285
+ return node.attr
286
+ return None
287
+
288
+
289
+ def _resolve_edges(all_nodes, all_edges):
290
+ """Post-process edges to resolve bare names to actual node IDs.
291
+
292
+ The per-file AST extraction produces edges with bare targets:
293
+ - calls: target='get_cached_image' (bare function name)
294
+ - imports: target='app.core.session' (dotted module path)
295
+
296
+ This function resolves them to actual node IDs so they survive
297
+ the graph build phase (which drops unresolvable targets).
298
+ """
299
+ node_ids = {n['id'] for n in all_nodes}
300
+
301
+ # Build function name → [node_id, ...] index
302
+ func_index: dict[str, list[str]] = {}
303
+ for n in all_nodes:
304
+ if n.get('file_type') == 'code' and '(' in n.get('label', ''):
305
+ # label looks like "get_cached_image()"
306
+ bare_name = n['label'].rstrip('()')
307
+ func_index.setdefault(bare_name, []).append(n['id'])
308
+
309
+ # Build module path → file node ID map
310
+ # e.g. 'app.core.session' → 'app_core_session_py'
311
+ module_index: dict[str, str] = {}
312
+ for n in all_nodes:
313
+ src = n.get('source_file', '')
314
+ if src.endswith('.py'):
315
+ # Convert 'app/core/session.py' or 'app\core\session.py'
316
+ # → dotted module: 'app.core.session'
317
+ mod_path = src.replace('\\', '/').replace('/', '.').removesuffix('.py')
318
+ # Strip leading __init__ for package imports
319
+ mod_path_init = mod_path.removesuffix('.__init__')
320
+ nid = n['id']
321
+ # Only map file-level nodes (no functions/classes)
322
+ if nid == src.replace('\\', '_').replace('/', '_').replace('.', '_'):
323
+ module_index[mod_path] = nid
324
+ if mod_path != mod_path_init:
325
+ module_index[mod_path_init] = nid
326
+
327
+ resolved_edges = []
328
+ calls_resolved = 0
329
+ imports_resolved = 0
330
+ dropped = 0
331
+
332
+ for edge in all_edges:
333
+ rel = edge.get('relation', '')
334
+
335
+ if rel == 'calls':
336
+ target = edge['target']
337
+ # Try exact match first
338
+ if target in node_ids:
339
+ resolved_edges.append(edge)
340
+ calls_resolved += 1
341
+ continue
342
+ # Resolve via function index
343
+ matches = func_index.get(target, [])
344
+ if matches:
345
+ for match_id in matches:
346
+ # Don't create self-edges within the same file
347
+ if match_id.rsplit('_', 1)[0] != edge['source'].rsplit('_', 1)[0] or len(matches) == 1:
348
+ resolved_edges.append({
349
+ **edge,
350
+ 'target': match_id,
351
+ 'confidence': 'INFERRED' if len(matches) > 1 else 'EXTRACTED',
352
+ 'confidence_score': 0.9 if len(matches) == 1 else 0.6,
353
+ })
354
+ calls_resolved += 1
355
+ else:
356
+ dropped += 1
357
+
358
+ elif rel == 'imports':
359
+ target = edge['target']
360
+ # Try exact match as node ID first
361
+ if target in node_ids:
362
+ resolved_edges.append(edge)
363
+ imports_resolved += 1
364
+ continue
365
+ # Resolve dotted module path to file node ID
366
+ resolved_id = module_index.get(target)
367
+ if resolved_id:
368
+ resolved_edges.append({**edge, 'target': resolved_id})
369
+ imports_resolved += 1
370
+ continue
371
+ # Try progressively shorter prefixes
372
+ # e.g. 'app.core.session.revoke_all' → 'app.core.session' → 'app.core' → 'app'
373
+ parts = target.split('.')
374
+ found = False
375
+ for i in range(len(parts) - 1, 0, -1):
376
+ prefix = '.'.join(parts[:i])
377
+ resolved_id = module_index.get(prefix)
378
+ if resolved_id:
379
+ resolved_edges.append({**edge, 'target': resolved_id})
380
+ imports_resolved += 1
381
+ found = True
382
+ break
383
+ if not found:
384
+ # External/stdlib import — drop it
385
+ dropped += 1
386
+
387
+ else:
388
+ # defines, has_rationale, etc — keep as-is
389
+ resolved_edges.append(edge)
390
+
391
+ print(f" Resolved: {calls_resolved} calls, {imports_resolved} imports, {dropped} dropped (external/stdlib)")
392
+ return resolved_edges
393
+
394
+
395
+ def run_ast_extraction(files, use_cache=True):
396
+ """Run AST extraction on all Python files, with caching."""
397
+ CACHE_DIR.mkdir(parents=True, exist_ok=True)
398
+ all_nodes = []
399
+ all_edges = []
400
+ cached, extracted = 0, 0
401
+
402
+ # Collect valid cache hashes for cleanup
403
+ valid_hashes = set()
404
+ py_files = [f for f in files if f['ext'] in AST_EXTENSIONS]
405
+ for f in py_files:
406
+ fpath = ROOT / f['path']
407
+ fhash = hash_file(fpath)
408
+ valid_hashes.add(fhash)
409
+ cache_file = CACHE_DIR / f"{fhash}.json"
410
+
411
+ if use_cache and cache_file.exists():
412
+ data = json.loads(cache_file.read_text(encoding='utf-8'))
413
+ all_nodes.extend(data.get('nodes', []))
414
+ all_edges.extend(data.get('edges', []))
415
+ cached += 1
416
+ else:
417
+ nodes, edges = extract_ast_file(fpath)
418
+ all_nodes.extend(nodes)
419
+ all_edges.extend(edges)
420
+ # Write cache
421
+ cache_file.write_text(json.dumps({
422
+ 'nodes': nodes, 'edges': edges,
423
+ }, indent=2), encoding='utf-8')
424
+ extracted += 1
425
+
426
+ # Clean stale cache entries
427
+ stale = 0
428
+ for cache_file in CACHE_DIR.glob('*.json'):
429
+ h = cache_file.stem
430
+ if h not in valid_hashes:
431
+ cache_file.unlink()
432
+ stale += 1
433
+
434
+ print(f" AST: {len(py_files)} Python files ({cached} cached, {extracted} extracted)")
435
+ if stale:
436
+ print(f" Cache cleanup: {stale} stale entries removed")
437
+ print(f" AST: {len(all_nodes)} nodes, {len(all_edges)} edges (raw)")
438
+
439
+ # Resolve bare targets to actual node IDs
440
+ all_edges = _resolve_edges(all_nodes, all_edges)
441
+ print(f" AST: {len(all_nodes)} nodes, {len(all_edges)} edges (resolved)")
442
+ return all_nodes, all_edges
443
+
444
+
445
+ # ─── Step 3: Semantic Extraction ─────────────────────────────────────────────
446
+ def build_semantic_nodes():
447
+ """
448
+ Build semantic nodes from documentation files.
449
+ These capture high-level architecture concepts that AST can't see.
450
+ """
451
+ nodes = []
452
+ edges = []
453
+ hyperedges = []
454
+
455
+ # Architecture components from README
456
+ arch_nodes = [
457
+ ("nudr_api", "NudR Stateless API", "README.md"),
458
+ ("fastapi_backend", "FastAPI Stateless Backend", "README.md"),
459
+ ("supabase_db", "Supabase PostgreSQL Database", "README.md"),
460
+ ("redis_cache", "Redis Session & Cache Store", "README.md"),
461
+ ("cloudflare_proxy", "Cloudflare Edge Proxy", "README.md"),
462
+ ("stripe_payments", "Stripe Payment Integration", "README.md"),
463
+ ("firebase_fcm", "Firebase FCM Push Notifications", "README.md"),
464
+ ("e2ee_encryption", "E2EE X25519 Key Exchange", "README.md"),
465
+ ("protobuf_framing", "Protobuf Binary WebSocket Framing", "README.md"),
466
+ ("hmac_verification", "HMAC-SHA256 Request Verification", "README.md"),
467
+ ("origin_secret", "X-Origin-Secret Middleware", "README.md"),
468
+ ("pow_challenge", "Proof-of-Work Challenge", "README.md"),
469
+ ("rate_limiting", "Per-IP Rate Limiting", "README.md"),
470
+ ("aws_secrets", "AWS Secrets Manager Integration", "README.md"),
471
+ ("terraform_infra", "Terraform AWS Infrastructure", "README.md"),
472
+ ("vpc_network", "VPC Network Topology", "README.md"),
473
+ ("alb_autoscaling", "ALB + Auto Scaling Group", "README.md"),
474
+ ("lambda_rotator", "Lambda Origin Secret Rotator", "README.md"),
475
+ ("unified_ws", "Unified WebSocket Endpoint /ws", "README.md"),
476
+ ("feed_ws", "Feed WebSocket Channel", "README.md"),
477
+ ("chat_ws", "Chat WebSocket Channel", "README.md"),
478
+ ("keysync_ws", "Keysync WebSocket Channel", "README.md"),
479
+ ("discovery_ws", "Discovery WebSocket Channel", "README.md"),
480
+ ("attack_detection", "Attack Detection & IP Risk Management", "README.md"),
481
+ ]
482
+
483
+ for nid, label, src in arch_nodes:
484
+ nodes.append({
485
+ 'id': f"sem_{nid}", 'label': label,
486
+ 'file_type': 'document', 'source_file': src,
487
+ })
488
+
489
+ # Architecture edges
490
+ arch_edges = [
491
+ ("nudr_api", "fastapi_backend", "implements"),
492
+ ("fastapi_backend", "supabase_db", "references"),
493
+ ("fastapi_backend", "redis_cache", "references"),
494
+ ("cloudflare_proxy", "origin_secret", "references"),
495
+ ("origin_secret", "lambda_rotator", "references"),
496
+ ("stripe_payments", "fastapi_backend", "references"),
497
+ ("firebase_fcm", "fastapi_backend", "references"),
498
+ ("e2ee_encryption", "keysync_ws", "references"),
499
+ ("protobuf_framing", "unified_ws", "references"),
500
+ ("terraform_infra", "vpc_network", "references"),
501
+ ("terraform_infra", "alb_autoscaling", "references"),
502
+ ("terraform_infra", "aws_secrets", "references"),
503
+ ("attack_detection", "rate_limiting", "references"),
504
+ ("unified_ws", "feed_ws", "conceptually_related_to"),
505
+ ("unified_ws", "chat_ws", "conceptually_related_to"),
506
+ ("unified_ws", "keysync_ws", "conceptually_related_to"),
507
+ ("unified_ws", "discovery_ws", "conceptually_related_to"),
508
+ ]
509
+
510
+ for src, tgt, rel in arch_edges:
511
+ edges.append({
512
+ 'source': f"sem_{src}", 'target': f"sem_{tgt}",
513
+ 'relation': rel,
514
+ 'confidence': 'EXTRACTED', 'confidence_score': 1.0,
515
+ 'source_file': 'README.md', 'weight': 1.0,
516
+ })
517
+
518
+ # Feed system nodes (from feed_system_documentation.md)
519
+ feed_nodes = [
520
+ ("feed_system", "Feed System Technical Documentation", "PLAN/feed_system_documentation.md"),
521
+ ("feed_scoring", "Multi-Factor Scoring Algorithm", "PLAN/feed_system_documentation.md"),
522
+ ("feed_pool", "Feed Pool Computation Pipeline", "PLAN/feed_system_documentation.md"),
523
+ ("feed_filters", "Feed Hard Filters (12 Rules)", "PLAN/feed_system_documentation.md"),
524
+ ("feed_heatmap", "Preference Heatmap (Learned AI)", "PLAN/feed_system_documentation.md"),
525
+ ("feed_reciprocal", "Reciprocal Boost & Injection", "PLAN/feed_system_documentation.md"),
526
+ ("feed_gradient", "3-Tier Gradient Distribution", "PLAN/feed_system_documentation.md"),
527
+ ("feed_redis", "Feed Redis Key Schema", "PLAN/feed_system_documentation.md"),
528
+ ]
529
+
530
+ for nid, label, src in feed_nodes:
531
+ nodes.append({
532
+ 'id': f"sem_{nid}", 'label': label,
533
+ 'file_type': 'document', 'source_file': src,
534
+ })
535
+
536
+ feed_edges = [
537
+ ("feed_system", "nudr_api", "references"),
538
+ ("feed_pool", "redis_cache", "references"),
539
+ ("feed_pool", "supabase_db", "references"),
540
+ ("feed_scoring", "feed_pool", "references"),
541
+ ("feed_filters", "feed_pool", "references"),
542
+ ("feed_heatmap", "feed_scoring", "references"),
543
+ ("feed_reciprocal", "feed_scoring", "references"),
544
+ ("feed_gradient", "feed_scoring", "references"),
545
+ ("feed_redis", "redis_cache", "references"),
546
+ ("feed_system", "feed_ws", "references"),
547
+ ]
548
+
549
+ for src, tgt, rel in feed_edges:
550
+ edges.append({
551
+ 'source': f"sem_{src}", 'target': f"sem_{tgt}",
552
+ 'relation': rel,
553
+ 'confidence': 'EXTRACTED', 'confidence_score': 1.0,
554
+ 'source_file': 'PLAN/feed_system_documentation.md', 'weight': 1.0,
555
+ })
556
+
557
+ # Logic analysis nodes
558
+ logic_nodes = [
559
+ ("logic_analysis", "Logic-Level Async Issue Audit", "PLAN/LOGIC_ANALYSIS.md"),
560
+ ("id_ws_reuse", "DISASTROUS: id(ws) Memory Reuse Bug", "PLAN/LOGIC_ANALYSIS.md"),
561
+ ("token_refresh_crash", "DISASTROUS: Token Refresh Crash Window", "PLAN/LOGIC_ANALYSIS.md"),
562
+ ("pubsub_crash", "DISASTROUS: PubSub Listener Permanent Crash", "PLAN/LOGIC_ANALYSIS.md"),
563
+ ("redis_pool_exhaustion", "DISASTROUS: Redis Connection Pool Exhaustion", "PLAN/LOGIC_ANALYSIS.md"),
564
+ ("preference_race", "Race Condition: Preference Merge", "PLAN/LOGIC_ANALYSIS.md"),
565
+ ]
566
+
567
+ for nid, label, src in logic_nodes:
568
+ nodes.append({
569
+ 'id': f"sem_{nid}", 'label': label,
570
+ 'file_type': 'document', 'source_file': src,
571
+ })
572
+
573
+ logic_edges = [
574
+ ("id_ws_reuse", "unified_ws", "references"),
575
+ ("token_refresh_crash", "unified_ws", "references"),
576
+ ("pubsub_crash", "redis_cache", "references"),
577
+ ("redis_pool_exhaustion", "redis_cache", "references"),
578
+ ("preference_race", "supabase_db", "references"),
579
+ ("logic_analysis", "nudr_api", "references"),
580
+ ]
581
+
582
+ for src, tgt, rel in logic_edges:
583
+ edges.append({
584
+ 'source': f"sem_{src}", 'target': f"sem_{tgt}",
585
+ 'relation': rel,
586
+ 'confidence': 'EXTRACTED', 'confidence_score': 1.0,
587
+ 'source_file': 'PLAN/LOGIC_ANALYSIS.md', 'weight': 1.0,
588
+ })
589
+
590
+ # Hyperedges
591
+ hyperedges = [
592
+ {
593
+ 'id': 'websocket_channels',
594
+ 'label': 'WebSocket Channel System',
595
+ 'nodes': ['sem_unified_ws', 'sem_feed_ws', 'sem_chat_ws', 'sem_keysync_ws', 'sem_discovery_ws'],
596
+ 'relation': 'participate_in',
597
+ 'confidence': 'EXTRACTED', 'confidence_score': 1.0,
598
+ 'source_file': 'README.md',
599
+ },
600
+ {
601
+ 'id': 'security_stack',
602
+ 'label': 'Security Defense Stack',
603
+ 'nodes': ['sem_hmac_verification', 'sem_origin_secret', 'sem_pow_challenge', 'sem_rate_limiting', 'sem_attack_detection'],
604
+ 'relation': 'participate_in',
605
+ 'confidence': 'EXTRACTED', 'confidence_score': 1.0,
606
+ 'source_file': 'README.md',
607
+ },
608
+ {
609
+ 'id': 'feed_pipeline',
610
+ 'label': 'Feed Recommendation Pipeline',
611
+ 'nodes': ['sem_feed_pool', 'sem_feed_filters', 'sem_feed_scoring', 'sem_feed_heatmap', 'sem_feed_reciprocal', 'sem_feed_gradient'],
612
+ 'relation': 'form',
613
+ 'confidence': 'EXTRACTED', 'confidence_score': 1.0,
614
+ 'source_file': 'PLAN/feed_system_documentation.md',
615
+ },
616
+ ]
617
+
618
+ print(f" Semantic: {len(nodes)} nodes, {len(edges)} edges, {len(hyperedges)} hyperedges")
619
+ return nodes, edges, hyperedges
620
+
621
+
622
+ # ─── Step 4: Merge & Build Graph ─────────────────────────────────────────────
623
+ def merge_and_build(ast_nodes, ast_edges, sem_nodes, sem_edges, hyperedges):
624
+ """Merge AST + semantic, build NetworkX graph, cluster, analyze."""
625
+ from graphify.build import build_from_json
626
+ from graphify.cluster import cluster, score_all
627
+ from graphify.analyze import god_nodes, surprising_connections, suggest_questions
628
+
629
+ # Merge: AST first, deduplicate semantic by id
630
+ seen = {n['id'] for n in ast_nodes}
631
+ merged_nodes = list(ast_nodes)
632
+ for n in sem_nodes:
633
+ if n['id'] not in seen:
634
+ merged_nodes.append(n)
635
+ seen.add(n['id'])
636
+
637
+ merged_edges = ast_edges + sem_edges
638
+
639
+ extraction = {
640
+ 'nodes': merged_nodes,
641
+ 'edges': merged_edges,
642
+ 'hyperedges': hyperedges,
643
+ }
644
+
645
+ G = build_from_json(extraction)
646
+ communities = cluster(G)
647
+ cohesion = score_all(G, communities)
648
+ gods = god_nodes(G)
649
+ surprises = surprising_connections(G, communities)
650
+
651
+ # Auto-label communities
652
+ labels = {}
653
+ for cid, members in communities.items():
654
+ names = " ".join(members[:10]).lower()
655
+ if 'feed' in names and 'service' in names:
656
+ labels[cid] = "Feed System"
657
+ elif 'feed' in names and ('score' in names or 'pool' in names):
658
+ labels[cid] = "Feed Scoring & Pool"
659
+ elif 'chat' in names and ('ws' in names or 'websocket' in names):
660
+ labels[cid] = "Chat WebSocket"
661
+ elif 'keysync' in names or 'key_exchange' in names:
662
+ labels[cid] = "Key Exchange & Sync"
663
+ elif 'discovery' in names and ('match' in names or 'like' in names):
664
+ labels[cid] = "Discovery & Matching"
665
+ elif 'auth' in names or 'signup' in names or 'signin' in names:
666
+ labels[cid] = "Authentication"
667
+ elif 'payment' in names or 'stripe' in names:
668
+ labels[cid] = "Payments & Billing"
669
+ elif 'setting' in names or 'profile' in names or 'preference' in names:
670
+ labels[cid] = "Settings & Profiles"
671
+ elif 'consent' in names:
672
+ labels[cid] = "Consent System"
673
+ elif 'report' in names or 'violation' in names:
674
+ labels[cid] = "Reporting & Moderation"
675
+ elif 'notification' in names or 'fcm' in names:
676
+ labels[cid] = "Push Notifications"
677
+ elif 'redis' in names or 'cache' in names:
678
+ labels[cid] = "Redis & Caching"
679
+ elif 'supabase' in names or 'migration' in names:
680
+ labels[cid] = "Database Layer"
681
+ elif 'terraform' in names or 'aws' in names or 'vpc' in names:
682
+ labels[cid] = "Infrastructure (Terraform)"
683
+ elif 'security' in names or 'rate_limit' in names or 'attack' in names:
684
+ labels[cid] = "Security & Rate Limiting"
685
+ elif 'codec' in names or 'hmac' in names or 'protobuf' in names:
686
+ labels[cid] = "WebSocket Codec"
687
+ elif 'unified' in names and 'ws' in names:
688
+ labels[cid] = "Unified WebSocket"
689
+ elif 'token' in names:
690
+ labels[cid] = "Token Management"
691
+ elif 'image' in names:
692
+ labels[cid] = "Image Processing"
693
+ elif 'event' in names or 'pending' in names:
694
+ labels[cid] = "Event Queue"
695
+ elif 'linkup' in names:
696
+ labels[cid] = "Linkup System"
697
+ elif 'test' in names:
698
+ labels[cid] = "Tests"
699
+ elif 'nuke' in names or 'script' in names:
700
+ labels[cid] = "Utility Scripts"
701
+ elif 'email' in names or 'otp' in names:
702
+ labels[cid] = "Email & OTP"
703
+ elif 'flutter' in names:
704
+ labels[cid] = "Flutter Directives"
705
+ elif 'readme' in names:
706
+ labels[cid] = "API Documentation"
707
+ else:
708
+ labels[cid] = f"Module Group {cid}"
709
+
710
+ questions = suggest_questions(G, communities, labels)
711
+
712
+ print(f" Graph: {G.number_of_nodes()} nodes, {G.number_of_edges()} edges, {len(communities)} communities")
713
+ return G, communities, cohesion, labels, gods, surprises, questions, extraction
714
+
715
+
716
+ # ─── Step 5: Generate Outputs ────────────────────────────────────────────────
717
+ def generate_outputs(G, communities, cohesion, labels, gods, surprises, questions, detection, extraction):
718
+ """Generate report, HTML, JSON, and manifest."""
719
+ from graphify.report import generate
720
+ from graphify.export import to_json, to_html
721
+
722
+ OUT_DIR.mkdir(parents=True, exist_ok=True)
723
+ tokens = {'input': 0, 'output': 0}
724
+
725
+ # Report
726
+ report = generate(
727
+ G, communities, cohesion, labels, gods, surprises,
728
+ detection, tokens, str(ROOT), suggested_questions=questions,
729
+ )
730
+ REPORT_PATH.write_text(report, encoding='utf-8')
731
+ print(f" -> {REPORT_PATH.relative_to(ROOT)}")
732
+
733
+ # JSON
734
+ to_json(G, communities, str(JSON_PATH))
735
+ print(f" -> {JSON_PATH.relative_to(ROOT)}")
736
+
737
+ # HTML
738
+ if G.number_of_nodes() <= 5000:
739
+ to_html(G, communities, str(HTML_PATH), community_labels=labels)
740
+ print(f" -> {HTML_PATH.relative_to(ROOT)}")
741
+ else:
742
+ print(f" !! Graph too large for HTML ({G.number_of_nodes()} nodes)")
743
+
744
+ # Manifest
745
+ manifest = {}
746
+ for f in detection.get('files', []):
747
+ manifest[f['path']] = f.get('mtime', 0)
748
+ MANIFEST.write_text(json.dumps(manifest, indent=2), encoding='utf-8')
749
+
750
+ # Cost tracker
751
+ if COST_PATH.exists():
752
+ cost = json.loads(COST_PATH.read_text(encoding='utf-8'))
753
+ else:
754
+ cost = {'runs': [], 'total_input_tokens': 0, 'total_output_tokens': 0}
755
+ cost['runs'].append({
756
+ 'date': datetime.now(timezone.utc).isoformat(),
757
+ 'nodes': G.number_of_nodes(),
758
+ 'edges': G.number_of_edges(),
759
+ 'communities': len(communities),
760
+ })
761
+ COST_PATH.write_text(json.dumps(cost, indent=2), encoding='utf-8')
762
+
763
+
764
+ # ─── Main Pipeline ───────────────────────────────────────────────────────────
765
+ def run_pipeline(skip_semantic=False):
766
+ """Execute the full graphify pipeline."""
767
+ start = time.time()
768
+ print("=" * 60)
769
+ print(f"graphify rebuild — {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}")
770
+ print("=" * 60)
771
+
772
+ # Step 1: Detect
773
+ print("\n[1/5] Detecting files...")
774
+ files, total_words = detect_files()
775
+ changed = get_changed_files(files)
776
+ print(f" Found {len(files)} files ({total_words:,} words)")
777
+ print(f" Changed since last build: {len(changed)}")
778
+
779
+ detection = {
780
+ 'files': files,
781
+ 'total_files': len(files),
782
+ 'total_words': total_words,
783
+ 'changed_files': len(changed),
784
+ }
785
+
786
+ # Step 2: AST extraction
787
+ print("\n[2/5] AST extraction...")
788
+ ast_nodes, ast_edges = run_ast_extraction(files)
789
+
790
+ # Step 3: Semantic extraction
791
+ if skip_semantic:
792
+ print("\n[3/5] Semantic extraction... SKIPPED (--quick)")
793
+ sem_nodes, sem_edges, hyperedges = [], [], []
794
+ else:
795
+ print("\n[3/5] Semantic extraction...")
796
+ sem_nodes, sem_edges, hyperedges = build_semantic_nodes()
797
+
798
+ # Step 4: Merge & build
799
+ print("\n[4/5] Building graph...")
800
+ G, communities, cohesion, labels, gods, surprises, questions, extraction = \
801
+ merge_and_build(ast_nodes, ast_edges, sem_nodes, sem_edges, hyperedges)
802
+
803
+ # Step 5: Generate outputs
804
+ print("\n[5/5] Generating outputs...")
805
+ generate_outputs(G, communities, cohesion, labels, gods, surprises, questions, detection, extraction)
806
+
807
+ elapsed = time.time() - start
808
+ print(f"\n{'=' * 60}")
809
+ print(f"Done in {elapsed:.1f}s")
810
+ print(f" {G.number_of_nodes()} nodes, {G.number_of_edges()} edges, {len(communities)} communities")
811
+ print(f" Open graphify-out/graph.html in your browser")
812
+ print(f"{'=' * 60}")
813
+
814
+
815
+ def watch_mode():
816
+ """Watch for file changes and rebuild automatically."""
817
+ print("Watching for changes... (Ctrl+C to stop)")
818
+ last_mtimes = {}
819
+
820
+ while True:
821
+ try:
822
+ changed = False
823
+ for dirpath, dirnames, filenames in os.walk(ROOT):
824
+ dirnames[:] = [d for d in dirnames if d not in SKIP_DIRS]
825
+ for fname in filenames:
826
+ fpath = Path(dirpath) / fname
827
+ if fpath.suffix.lower() not in CORPUS_EXTENSIONS:
828
+ continue
829
+ try:
830
+ mtime = fpath.stat().st_mtime
831
+ except OSError:
832
+ continue
833
+ key = str(fpath)
834
+ if key in last_mtimes and last_mtimes[key] != mtime:
835
+ rel = fpath.relative_to(ROOT)
836
+ print(f"\n Changed: {rel}")
837
+ changed = True
838
+ last_mtimes[key] = mtime
839
+
840
+ if changed:
841
+ run_pipeline()
842
+
843
+ time.sleep(3)
844
+ except KeyboardInterrupt:
845
+ print("\nStopped watching.")
846
+ break
847
+
848
+
849
+ if __name__ == '__main__':
850
+ parser = argparse.ArgumentParser(description='NudR Knowledge Graph Rebuild')
851
+ parser.add_argument('--watch', action='store_true', help='Watch mode: rebuild on file change')
852
+ parser.add_argument('--quick', action='store_true', help='Quick mode: AST-only, skip semantic')
853
+ args = parser.parse_args()
854
+
855
+ if args.watch:
856
+ run_pipeline(skip_semantic=args.quick)
857
+ watch_mode()
858
+ else:
859
+ run_pipeline(skip_semantic=args.quick)
graphify-out/GRAPH_REPORT.md ADDED
@@ -0,0 +1,252 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Graph Report - /run/media/morpheuslord/Personal_Files/Projects/Rewriter (2026-05-03)
2
+
3
+ ## Corpus Check
4
+ - 442 files · ~1,967,332 words
5
+ - Verdict: corpus is large enough that graph structure adds value.
6
+
7
+ ## Summary
8
+ - 549 nodes · 873 edges · 27 communities detected
9
+ - Extraction: 76% EXTRACTED · 24% INFERRED · 0% AMBIGUOUS · INFERRED: 208 edges (avg confidence: 0.6)
10
+ - Token cost: 0 input · 0 output
11
+
12
+ ## Community Hubs (Navigation)
13
+ - [[_COMMUNITY_Module Group 0|Module Group 0]]
14
+ - [[_COMMUNITY_Utility Scripts|Utility Scripts]]
15
+ - [[_COMMUNITY_Module Group 2|Module Group 2]]
16
+ - [[_COMMUNITY_Module Group 3|Module Group 3]]
17
+ - [[_COMMUNITY_Utility Scripts|Utility Scripts]]
18
+ - [[_COMMUNITY_Module Group 5|Module Group 5]]
19
+ - [[_COMMUNITY_Token Management|Token Management]]
20
+ - [[_COMMUNITY_Utility Scripts|Utility Scripts]]
21
+ - [[_COMMUNITY_Authentication|Authentication]]
22
+ - [[_COMMUNITY_Utility Scripts|Utility Scripts]]
23
+ - [[_COMMUNITY_Module Group 10|Module Group 10]]
24
+ - [[_COMMUNITY_Feed Scoring & Pool|Feed Scoring & Pool]]
25
+ - [[_COMMUNITY_Module Group 12|Module Group 12]]
26
+ - [[_COMMUNITY_Token Management|Token Management]]
27
+ - [[_COMMUNITY_Module Group 14|Module Group 14]]
28
+ - [[_COMMUNITY_Utility Scripts|Utility Scripts]]
29
+ - [[_COMMUNITY_Module Group 16|Module Group 16]]
30
+ - [[_COMMUNITY_Module Group 17|Module Group 17]]
31
+ - [[_COMMUNITY_Module Group 18|Module Group 18]]
32
+ - [[_COMMUNITY_Module Group 19|Module Group 19]]
33
+ - [[_COMMUNITY_Module Group 20|Module Group 20]]
34
+ - [[_COMMUNITY_Infrastructure (Terraform)|Infrastructure (Terraform)]]
35
+ - [[_COMMUNITY_Utility Scripts|Utility Scripts]]
36
+ - [[_COMMUNITY_Module Group 23|Module Group 23]]
37
+ - [[_COMMUNITY_Security & Rate Limiting|Security & Rate Limiting]]
38
+ - [[_COMMUNITY_WebSocket Codec|WebSocket Codec]]
39
+ - [[_COMMUNITY_Module Group 27|Module Group 27]]
40
+
41
+ ## God Nodes (most connected - your core abstractions)
42
+ 1. `train()` - 34 edges
43
+ 2. `__init__()` - 28 edges
44
+ 3. `__init__()` - 27 edges
45
+ 4. `__init__()` - 27 edges
46
+ 5. `__init__()` - 27 edges
47
+ 6. `__init__()` - 27 edges
48
+ 7. `__init__()` - 27 edges
49
+ 8. `__init__()` - 27 edges
50
+ 9. `correct()` - 16 edges
51
+ 10. `__init__()` - 13 edges
52
+
53
+ ## Surprising Connections (you probably didn't know these)
54
+ - `run_inference()` --calls--> `correct()` [INFERRED]
55
+ scripts/run_inference.py → src/preprocessing/spell_corrector.py
56
+ - `train()` --calls--> `__init__()` [INFERRED]
57
+ scripts/train.py → src/training/dataset.py
58
+ - `__init__()` --calls--> `__init__()` [INFERRED]
59
+ scripts/train.py → src/training/dataset.py
60
+ - `score()` --calls--> `forward()` [INFERRED]
61
+ src/training/human_pattern_extractor.py → scripts/train.py
62
+ - `test_spell_correction_empty()` --calls--> `correct()` [INFERRED]
63
+ tests/test_preprocessing.py → src/inference/corrector.py
64
+
65
+ ## Hyperedges (group relationships)
66
+ - **WebSocket Channel System** — sem_unified_ws, sem_feed_ws, sem_chat_ws, sem_keysync_ws, sem_discovery_ws [EXTRACTED 1.00]
67
+ - **Security Defense Stack** — sem_hmac_verification, sem_origin_secret, sem_pow_challenge, sem_rate_limiting, sem_attack_detection [EXTRACTED 1.00]
68
+ - **Feed Recommendation Pipeline** — sem_feed_pool, sem_feed_filters, sem_feed_scoring, sem_feed_heatmap, sem_feed_reciprocal, sem_feed_gradient [EXTRACTED 1.00]
69
+
70
+ ## Communities
71
+
72
+ ### Community 0 - "Module Group 0"
73
+ Cohesion: 0.04
74
+ Nodes (55): EntitySpan, NERTagger, Tags named entities and produces protected spans., Named Entity Recognition tagger.
75
+ Identifies entities (persons, locations, organi, get_protected_spans(), Return (start, end) char spans that must not be modified., tag(), Extract all named entities from text. (+47 more)
76
+
77
+ ### Community 1 - "Utility Scripts"
78
+ Cohesion: 0.06
79
+ Nodes (38): Evaluation script.
80
+ Runs all evaluation metrics on the test set.
81
+ Run: python scri, evaluate(), Run evaluation on the specified data split., ERRANTEvaluator, Evaluates grammar correction quality using ERRANT annotations., ERRANT-based grammatical error evaluation.
82
+ Uses the ERRANT toolkit for standardi, evaluate(), Compute ERRANT precision, recall, F0.5. (+30 more)
83
+
84
+ ### Community 2 - "Module Group 2"
85
+ Cohesion: 0.07
86
+ Nodes (36): StyleFingerprinter, Extracts style fingerprint vectors from text samples., StyleProjectionMLP, Projects raw feature vector to 512-dim style embedding., _avg_dep_tree_depth(), Compute average dependency tree depth across all tokens., _avg_syllables_per_word(), Average syllables per word. (+28 more)
87
+
88
+ ### Community 3 - "Module Group 3"
89
+ Cohesion: 0.06
90
+ Nodes (35): AWLLoader, Loads and manages Academic Word List data., _load_synonyms(), Load academic synonym mappings from JSON., _load_word_list(), Load a word list file into a set of lowercase words., all_words(), Return the full set of academic words. (+27 more)
91
+
92
+ ### Community 4 - "Utility Scripts"
93
+ Cohesion: 0.31
94
+ Nodes (34): __init__(), CEOnlyLoss, Cross-entropy only loss — the only loss that provides gradient signal., __init__(), _auto_batch_size(), Pick optimal batch size based on model size and available resources., _setup_device(), Detect GPU and configure hybrid VRAM management.
95
+
96
+ Returns (device, gpu_info) whe (+26 more)
97
+
98
+ ### Community 5 - "Module Group 5"
99
+ Cohesion: 0.08
100
+ Nodes (29): DyslexiaSimulator, Generates synthetic dyslectic text from clean input for data augmentation., _double_letter(), Double a random interior letter., _omit_letter(), Remove a random interior letter., _reverse_letter(), Swap b/d, p/q style reversals. (+21 more)
101
+
102
+ ### Community 6 - "Token Management"
103
+ Cohesion: 0.07
104
+ Nodes (28): Loads and wraps the base pretrained model.
105
+ Supported architectures:
106
+ - google/f, load_model_and_tokenizer(), Load a pretrained model with optional LoRA and quantization.
107
+
108
+ Args:
109
+ model_ke, apply_lora(), Apply LoRA adapters to a model and return the wrapped model., create_lora_config(), Create a LoRA configuration for the given task type., LoRA adapter configuration and management.
110
+ Wraps PEFT LoRA utilities for applyin (+20 more)
111
+
112
+ ### Community 7 - "Utility Scripts"
113
+ Cohesion: 0.08
114
+ Nodes (28): Pre-trains the HumanPatternClassifier on both Kaggle datasets.
115
+ Run this BEFORE t, train_classifier(), Pre-train the human pattern classifier on Kaggle datasets., forward(), HumanPatternClassifier, Lightweight MLP trained to distinguish human from AI writing.
116
+ Input: feature vec, HumanPatternFeatureExtractor, Extracts 17-dimensional feature vector encoding human vs AI writing patterns.
117
+
118
+ O (+20 more)
119
+
120
+ ### Community 8 - "Authentication"
121
+ Cohesion: 0.08
122
+ Nodes (27): AuthorshipVerifier, Verifies authorship consistency between input and output text., Authorship verification module.
123
+ Uses a fine-tuned model to verify whether the co, verify(), Return probability that both texts were written by the same author.
124
+
125
+ Uses senten, average_style_vectors(), Compute the mean style vector from a list of vectors., cosine_similarity() (+19 more)
126
+
127
+ ### Community 9 - "Utility Scripts"
128
+ Cohesion: 0.08
129
+ Nodes (25): Interactive inference script.
130
+ Run: python scripts/run_inference.py --config conf, run_inference(), Run inference on text input., correct_text(), Correct dyslectic text with style preservation and academic elevation., FastAPI server for the Dyslexia Academic Writing Corrector API.
131
+ Provides RESTful, health(), Health check endpoint. (+17 more)
132
+
133
+ ### Community 10 - "Module Group 10"
134
+ Cohesion: 0.1
135
+ Nodes (27): _get_call_name(), Extract callable name from ast.Call node., _get_name(), Extract name from various AST node types., _resolve_edges(), Post-process edges to resolve bare names to actual node IDs.
136
+
137
+ The per-file AST e, build_semantic_nodes(), Build semantic nodes from documentation files.
138
+ These capture high-level architec (+19 more)
139
+
140
+ ### Community 11 - "Feed Scoring & Pool"
141
+ Cohesion: 0.08
142
+ Nodes (27): Chat WebSocket Channel, Discovery WebSocket Channel, E2EE X25519 Key Exchange, FastAPI Stateless Backend, Feed Hard Filters (12 Rules), 3-Tier Gradient Distribution, Preference Heatmap (Learned AI), Feed Pool Computation Pipeline (+19 more)
143
+
144
+ ### Community 12 - "Module Group 12"
145
+ Cohesion: 0.12
146
+ Nodes (22): GLEU, (Note: This script computes sentence-level GLEU score.)
147
+
148
+ This script calculates , get_gleu_stats(), calculate mean and confidence interval from all GLEU iterations, get_ngram_counts(), get ngrams of order n for a tokenized sentence, get_ngram_diff(), returns ngrams in a but not in b (+14 more)
149
+
150
+ ### Community 13 - "Token Management"
151
+ Cohesion: 0.16
152
+ Nodes (17): clean_para(), convert_char_to_tok(), get_all_tok_starts_and_ends(), get_paras(), get_sents(), get_token_edits(), main(), noop_edit() (+9 more)
153
+
154
+ ### Community 14 - "Module Group 14"
155
+ Cohesion: 0.13
156
+ Nodes (14): FormalityClassifier, Scores text formality on a 0-1 scale using rule-based heuristics., Formality classifier module.
157
+ Classifies text on a 0-1 formality scale using ling, score(), Return formality score in [0, 1]. Higher = more formal.
158
+
159
+ Scoring based on:
160
+ - Con, RegisterFilterAdvanced, Advanced register filtering with nominalisation and hedging passes., add_hedging() (+6 more)
161
+
162
+ ### Community 15 - "Utility Scripts"
163
+ Cohesion: 0.2
164
+ Nodes (14): apply_bea19_edits(), Apply BEA-2019 character-level edits to produce corrected text.
165
+
166
+ edits_block for, create_splits(), Split train.jsonl into train and val sets., Converts all raw dataset formats into unified JSONL training format.
167
+ Output sche, main(), process_bea19_json(), Process a BEA-2019 format JSON file (FCE or W&I+LOCNESS).
168
+ Each line is a JSON ob (+6 more)
169
+
170
+ ### Community 16 - "Module Group 16"
171
+ Cohesion: 0.24
172
+ Nodes (9): CorrectionTrainer, Custom trainer — uses model's built-in loss directly., _strip_custom_fields(), Remove dataset fields that T5 doesn't accept., compute_loss(), Use model's built-in CE loss — avoids double-computing logits loss., Custom HuggingFace Trainer subclass.
173
+ Uses the model's built-in cross-entropy los, prediction_step() (+1 more)
174
+
175
+ ### Community 17 - "Module Group 17"
176
+ Cohesion: 0.29
177
+ Nodes (5): RateLimitMiddleware, Simple in-memory rate limiting., RequestLoggingMiddleware, Logs all incoming requests with timing information., API middleware for request logging, rate limiting, and error handling.
178
+
179
+ ### Community 18 - "Module Group 18"
180
+ Cohesion: 0.29
181
+ Nodes (5): EarlyStoppingOnStyleDrift, Stops training if style similarity drops below threshold., StyleMetricsCallback, Logs style similarity metrics during evaluation., Training callbacks for monitoring and checkpointing.
182
+ Integrates with Weights & B
183
+
184
+ ### Community 19 - "Module Group 19"
185
+ Cohesion: 0.33
186
+ Nodes (5): EmotionClassifier, Classifies emotional register of text using keyword-based analysis., classify(), Return emotion distribution over register categories.
187
+
188
+ Returns a dict with keys:, Emotion/register classifier module.
189
+ Classifies text emotional register (neutral,
190
+
191
+ ### Community 20 - "Module Group 20"
192
+ Cohesion: 0.5
193
+ Nodes (3): CorrectionRequest, CorrectionResponse, Pydantic schemas for API request/response validation.
194
+
195
+ ### Community 21 - "Infrastructure (Terraform)"
196
+ Cohesion: 0.5
197
+ Nodes (4): ALB + Auto Scaling Group, AWS Secrets Manager Integration, Terraform AWS Infrastructure, VPC Network Topology
198
+
199
+ ### Community 22 - "Utility Scripts"
200
+ Cohesion: 0.67
201
+ Nodes (1): Downloads all publicly available HuggingFace datasets automatically.
202
+ Datasets re
203
+
204
+ ### Community 23 - "Module Group 23"
205
+ Cohesion: 0.67
206
+ Nodes (3): Cloudflare Edge Proxy, Lambda Origin Secret Rotator, X-Origin-Secret Middleware
207
+
208
+ ### Community 24 - "Security & Rate Limiting"
209
+ Cohesion: 1.0
210
+ Nodes (2): Attack Detection & IP Risk Management, Per-IP Rate Limiting
211
+
212
+ ### Community 26 - "WebSocket Codec"
213
+ Cohesion: 1.0
214
+ Nodes (1): HMAC-SHA256 Request Verification
215
+
216
+ ### Community 27 - "Module Group 27"
217
+ Cohesion: 1.0
218
+ Nodes (1): Proof-of-Work Challenge
219
+
220
+ ## Knowledge Gaps
221
+ - **259 isolated node(s):** `graphify_rebuild.py — One-shot NudR knowledge graph regeneration.
222
+
223
+ Usage:
224
+ py`, `Walk the project and return list of relevant files with metadata.`, `Compare against manifest to find changed files.`, `SHA-256 hash for cache keying.`, `Extract AST nodes and edges from a single Python file.` (+254 more)
225
+ These have ≤1 connection - possible missing edges or undocumented components.
226
+ - **Thin community `Utility Scripts`** (3 nodes): `download_all_huggingface_datasets.py`, `Downloads all publicly available HuggingFace datasets automatically.
227
+ Datasets re`, `main()`
228
+ Too small to be a meaningful cluster - may be noise or needs more connections extracted.
229
+ - **Thin community `Security & Rate Limiting`** (2 nodes): `Attack Detection & IP Risk Management`, `Per-IP Rate Limiting`
230
+ Too small to be a meaningful cluster - may be noise or needs more connections extracted.
231
+ - **Thin community `WebSocket Codec`** (1 nodes): `HMAC-SHA256 Request Verification`
232
+ Too small to be a meaningful cluster - may be noise or needs more connections extracted.
233
+ - **Thin community `Module Group 27`** (1 nodes): `Proof-of-Work Challenge`
234
+ Too small to be a meaningful cluster - may be noise or needs more connections extracted.
235
+
236
+ ## Suggested Questions
237
+ _Questions this graph is uniquely positioned to answer:_
238
+
239
+ - **Why does `parse()` connect `Token Management` to `Utility Scripts`, `Module Group 10`?**
240
+ _High betweenness centrality (0.125) - this node is a cross-community bridge._
241
+ - **Why does `correct()` connect `Utility Scripts` to `Module Group 0`, `Utility Scripts`, `Module Group 2`, `Module Group 3`?**
242
+ _High betweenness centrality (0.092) - this node is a cross-community bridge._
243
+ - **Why does `extract_ast_file()` connect `Module Group 10` to `Token Management`?**
244
+ _High betweenness centrality (0.083) - this node is a cross-community bridge._
245
+ - **Are the 26 inferred relationships involving `train()` (e.g. with `__init__()` and `__init__()`) actually correct?**
246
+ _`train()` has 26 INFERRED edges - model-reasoned connections that need verification._
247
+ - **Are the 26 inferred relationships involving `__init__()` (e.g. with `train()` and `__init__()`) actually correct?**
248
+ _`__init__()` has 26 INFERRED edges - model-reasoned connections that need verification._
249
+ - **Are the 26 inferred relationships involving `__init__()` (e.g. with `train()` and `__init__()`) actually correct?**
250
+ _`__init__()` has 26 INFERRED edges - model-reasoned connections that need verification._
251
+ - **Are the 26 inferred relationships involving `__init__()` (e.g. with `train()` and `__init__()`) actually correct?**
252
+ _`__init__()` has 26 INFERRED edges - model-reasoned connections that need verification._
graphify-out/cost.json ADDED
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+ {
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+ {
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+ "date": "2026-05-02T14:10:36.766309+00:00",
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+ },
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+ "date": "2026-05-02T14:38:36.641525+00:00",
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+ "nodes": 527,
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+ "edges": 791,
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+ },
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+ "date": "2026-05-02T15:18:12.036397+00:00",
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+ "nodes": 535,
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+ },
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+ {
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+ "date": "2026-05-02T15:51:26.719125+00:00",
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+ "nodes": 541,
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+ "edges": 861,
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+ "communities": 27
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+ },
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+ {
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+ "date": "2026-05-03T09:17:56.530188+00:00",
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+ "nodes": 549,
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+ "edges": 873,
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+ "communities": 28
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+ }
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+ ],
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+ "total_input_tokens": 0,
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+ "total_output_tokens": 0
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+ }
graphify-out/graph.html ADDED
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graphify-out/graph.json ADDED
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graphify-out/manifest.json ADDED
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1
+ {
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+ "start.sh": 1777710701.3410938,
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+ "checkpoints/best_model_merged/config.json": 1777798859.073088,
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+ "checkpoints/checkpoint-1500/optimizer.pt": 1777796453.5532222,
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+ "checkpoints/checkpoint-1500/README.md": 1777796441.7245266,
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+ "data/raw/fce/m2/fce.dev.gold.bea19.m2": 1551908535.0,
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+ "data/raw/hf/raid/data-00008-of-00025.arrow": 1777703753.7418487,
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+ "data/raw/hf/raid/data-00009-of-00025.arrow": 1777703767.0649137,
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+ "data/raw/hf/raid/data-00010-of-00025.arrow": 1777703770.6492746,
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+ "data/raw/hf/raid/data-00011-of-00025.arrow": 1777703779.966218,
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+ "data/raw/hf/raid/data-00012-of-00025.arrow": 1777703782.763389,
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+ }
pyproject.toml ADDED
@@ -0,0 +1,42 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ [build-system]
2
+ requires = ["setuptools>=68.0", "wheel"]
3
+ build-backend = "setuptools.build_meta"
4
+
5
+ [project]
6
+ name = "dyslexia-writing-ai"
7
+ version = "1.0.0"
8
+ description = "Style-preserving, grammar-correcting, academic vocabulary elevating AI model for dyslectic writing"
9
+ readme = "README.md"
10
+ license = {text = "MIT"}
11
+ requires-python = ">=3.10"
12
+ authors = [
13
+ {name = "morpheuslord"},
14
+ ]
15
+
16
+ [project.scripts]
17
+ train = "scripts.train:train"
18
+
19
+ [tool.setuptools.packages.find]
20
+ include = ["src*"]
21
+
22
+ [tool.black]
23
+ line-length = 120
24
+ target-version = ["py310"]
25
+
26
+ [tool.ruff]
27
+ line-length = 120
28
+ target-version = "py310"
29
+
30
+ [tool.ruff.lint]
31
+ select = ["E", "F", "W", "I", "N", "UP"]
32
+
33
+ [tool.mypy]
34
+ python_version = "3.10"
35
+ warn_return_any = true
36
+ warn_unused_configs = true
37
+ ignore_missing_imports = true
38
+
39
+ [tool.pytest.ini_options]
40
+ testpaths = ["tests"]
41
+ asyncio_mode = "auto"
42
+ addopts = "-v --tb=short"
requirements-dev.txt ADDED
@@ -0,0 +1,9 @@
 
 
 
 
 
 
 
 
 
 
1
+ pytest==8.1.1
2
+ pytest-asyncio==0.23.6
3
+ pytest-cov==5.0.0
4
+ black==24.4.0
5
+ ruff==0.4.1
6
+ mypy==1.9.0
7
+ pre-commit==3.7.0
8
+ ipykernel==6.29.4
9
+ jupyter==1.0.0
requirements.txt ADDED
@@ -0,0 +1,59 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # ── Core ML & Deep Learning ──────────────────────────────────────────────────
2
+ torch>=2.9.0
3
+ torchvision>=0.20.0
4
+ torchaudio>=2.9.0
5
+ transformers>=4.40.0
6
+ datasets>=2.18.0
7
+ accelerate>=0.29.0
8
+ peft>=0.10.0 # LoRA / parameter-efficient fine-tuning
9
+ bitsandbytes>=0.43.0 # 8-bit & 4-bit quantization
10
+ sentencepiece>=0.2.0 # T5 tokenizer dependency
11
+ protobuf>=4.25.0 # T5 tokenizer dependency
12
+
13
+ # ── Sentence Embeddings ───────────────────────────────────────────────────────
14
+ sentence-transformers>=2.6.0
15
+ faiss-cpu>=1.8.0 # Vector similarity search
16
+
17
+ # ── NLP Pre-Processing ────────────────────────────────────────────────────────
18
+ spacy>=3.7.0
19
+ spacy-transformers>=1.3.0
20
+ language-tool-python>=2.7.0 # LanguageTool grammar checker
21
+ pyspellchecker>=0.8.0 # Context-free spell check (pre-pass)
22
+ nltk>=3.8.0
23
+ textstat>=0.7.0 # Readability scores (Flesch-Kincaid, etc.)
24
+
25
+ # ── Lexical Substitution ─────────────────────────────────────────────────────
26
+ wordfreq>=3.1.0 # Word frequency data
27
+
28
+ # ── Training Infrastructure ───────────────────────────────────────────────────
29
+ wandb>=0.16.0 # Experiment tracking
30
+ tensorboard>=2.16.0
31
+ numpy>=1.26.0
32
+ pandas>=2.2.0
33
+ scikit-learn>=1.4.0
34
+ scipy>=1.13.0
35
+
36
+ # ── Evaluation Tools ──────────────────────────────────────────────────────────
37
+ errant>=2.3.0 # Grammar Error Annotation Toolkit
38
+ sacrebleu>=2.4.0 # BLEU/GLEU scoring
39
+ bert-score>=0.3.13 # Semantic similarity scoring
40
+ rouge-score>=0.1.2
41
+
42
+ # ── API Server ────────────────────────────────────────────────────────────────
43
+ fastapi>=0.110.0
44
+ uvicorn[standard]>=0.29.0
45
+ pydantic>=2.7.0
46
+ python-multipart>=0.0.9
47
+ httpx>=0.27.0
48
+
49
+ # ── Inference Optimisation ────────────────────────────────────────────────────
50
+ optimum>=1.19.0 # Hugging Face model optimisation
51
+
52
+ # ── Utilities ─────────────────────────────────────────────────────────────────
53
+ pyyaml>=6.0.1
54
+ tqdm>=4.66.0
55
+ loguru>=0.7.0
56
+ python-dotenv>=1.0.0
57
+ click>=8.1.0
58
+ rich>=13.7.0 # Beautiful terminal output
59
+ joblib>=1.4.0
scripts/download_all_huggingface_datasets.py ADDED
@@ -0,0 +1,61 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """
2
+ Downloads all publicly available HuggingFace datasets automatically.
3
+ Datasets requiring registration/request are flagged with instructions.
4
+
5
+ Run: python scripts/download_all_huggingface_datasets.py
6
+ """
7
+
8
+ from datasets import load_dataset
9
+ import os
10
+
11
+ os.makedirs("data/raw/hf", exist_ok=True)
12
+
13
+ # (hf_identifier, config, split, output_subdir)
14
+ # Removed trust_remote_code — deprecated in newer datasets versions.
15
+ # Removed datasets that no longer exist or require custom loading scripts.
16
+ HF_DATASETS = [
17
+ ("liamdugan/raid", None, "train", "raid"),
18
+ ("Hello-SimpleAI/HC3", "all", "train", "hc3"),
19
+ ("yaful/MAGE", None, "train", "mage"),
20
+ ("aadityaubhat/GPT-wiki-intro", None, "train", "gpt_wiki_intro"),
21
+ ("euclaise/writingprompts", None, "train", "writing_prompts"),
22
+ ("wikitext", "wikitext-103-raw-v1", "train", "wikitext103"),
23
+ ("paws", "labeled_final", "train", "paws"),
24
+ ]
25
+
26
+
27
+ def main():
28
+ for hf_id, config, split, subdir in HF_DATASETS:
29
+ out_path = f"data/raw/hf/{subdir}"
30
+ if os.path.exists(out_path):
31
+ print(f"✓ Already exists: {subdir}")
32
+ continue
33
+ try:
34
+ print(f"Downloading: {hf_id}...")
35
+ if config:
36
+ ds = load_dataset(hf_id, config, split=split)
37
+ else:
38
+ ds = load_dataset(hf_id, split=split)
39
+ ds.save_to_disk(out_path)
40
+ print(f" ✓ Saved to {out_path} ({len(ds)} examples)")
41
+ except Exception as e:
42
+ print(f" ✗ Failed: {hf_id} — {e}")
43
+
44
+ # Datasets requiring manual action
45
+ MANUAL_DATASETS = {
46
+ "google/clang8": "Requires custom loading script — download manually from HF page",
47
+ "openwebtext": "Very large (40GB) — download separately if needed",
48
+ "W&I+LOCNESS": "✓ Already downloaded (data/raw/wi+locness/)",
49
+ "FCE Corpus": "✓ Already downloaded (data/raw/fce/)",
50
+ "GYAFC": "Unavailable — skipped",
51
+ "Kaggle shanegerami": "Run: bash scripts/download_kaggle_datasets.sh",
52
+ "Kaggle starblasters8":"Run: bash scripts/download_kaggle_datasets.sh",
53
+ }
54
+
55
+ print("\n── Datasets requiring manual action ──")
56
+ for name, note in MANUAL_DATASETS.items():
57
+ print(f" {name}: {note}")
58
+
59
+
60
+ if __name__ == "__main__":
61
+ main()
scripts/download_datasets.sh ADDED
@@ -0,0 +1,31 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # Download all training data sources
3
+ # Run: bash scripts/download_datasets.sh
4
+
5
+ set -e
6
+
7
+ mkdir -p data/raw/wi_locness data/raw/jfleg data/raw/gyafc data/raw/custom_dyslexia
8
+
9
+ echo "=== Downloading JFLEG (JHU Fluency-Extended GUG) ==="
10
+ if [ ! -d "data/raw/jfleg_repo" ]; then
11
+ git clone https://github.com/keisks/jfleg.git data/raw/jfleg_repo
12
+ cp data/raw/jfleg_repo/test/*.src data/raw/jfleg/ 2>/dev/null || true
13
+ cp data/raw/jfleg_repo/test/*.ref* data/raw/jfleg/ 2>/dev/null || true
14
+ echo " ✓ JFLEG downloaded"
15
+ else
16
+ echo " ✓ JFLEG already exists"
17
+ fi
18
+
19
+ echo ""
20
+ echo "=== Manual Downloads Required ==="
21
+ echo ""
22
+ echo "W&I+LOCNESS (35k pairs, gold standard GEC):"
23
+ echo " → Register at: https://www.cl.cam.ac.uk/research/nl/bea2019st/"
24
+ echo " → Place files in: data/raw/wi_locness/"
25
+ echo ""
26
+ echo "GYAFC (105k pairs, formality transfer):"
27
+ echo " → Request access at: https://github.com/raosudha89/GYAFC-corpus"
28
+ echo " → Place files in: data/raw/gyafc/"
29
+ echo ""
30
+ echo "=== Dataset download complete ==="
31
+ echo "Check manually downloaded datasets before proceeding."
scripts/download_kaggle_datasets.sh ADDED
@@ -0,0 +1,41 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+ # Download Kaggle datasets for Human-Pattern Anti-AI training
3
+ # Requires: pip install kaggle
4
+ # Setup: Place kaggle.json API key at ~/.kaggle/kaggle.json
5
+ # Get key: kaggle.com → Account → Create New API Token
6
+ #
7
+ # Run: bash scripts/download_kaggle_datasets.sh
8
+
9
+ set -e
10
+
11
+ mkdir -p data/raw/shanegerami data/raw/starblasters8
12
+
13
+ echo "=== Downloading Kaggle Datasets ==="
14
+ echo ""
15
+
16
+ # Dataset 1: AI vs Human Text (500K essays)
17
+ echo "Downloading: shanegerami/ai-vs-human-text..."
18
+ if [ ! -f "data/raw/shanegerami/train_essays.csv" ]; then
19
+ kaggle datasets download -d shanegerami/ai-vs-human-text \
20
+ -p data/raw/shanegerami --unzip
21
+ echo " ✓ Dataset 1 downloaded"
22
+ else
23
+ echo " ✓ Dataset 1 already exists"
24
+ fi
25
+
26
+ echo ""
27
+
28
+ # Dataset 2: Human vs LLM Text Corpus (800K, 63 LLMs)
29
+ echo "Downloading: starblasters8/human-vs-llm-text-corpus..."
30
+ if [ ! -f "data/raw/starblasters8/data.parquet" ]; then
31
+ kaggle datasets download -d starblasters8/human-vs-llm-text-corpus \
32
+ -p data/raw/starblasters8 --unzip
33
+ echo " ✓ Dataset 2 downloaded"
34
+ else
35
+ echo " ✓ Dataset 2 already exists"
36
+ fi
37
+
38
+ echo ""
39
+ echo "=== Kaggle datasets download complete ==="
40
+ echo "Dataset 1 (CSV): data/raw/shanegerami/train_essays.csv"
41
+ echo "Dataset 2 (Parquet): data/raw/starblasters8/data.parquet"
scripts/evaluate.py ADDED
@@ -0,0 +1,85 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """
2
+ Evaluation script.
3
+ Runs all evaluation metrics on the test set.
4
+ Run: python scripts/evaluate.py --config configs/training_config.yaml --split test
5
+ """
6
+
7
+ import click
8
+ import yaml
9
+ import json
10
+ import torch
11
+ from loguru import logger
12
+ from rich.console import Console
13
+ from rich.table import Table
14
+
15
+ from src.model.base_model import load_model_and_tokenizer
16
+ from src.model.generation_utils import batch_generate
17
+ from src.evaluation.gleu_scorer import GLEUScorer
18
+ from src.evaluation.errant_evaluator import ERRANTEvaluator
19
+ from src.evaluation.style_metrics import StyleEvaluator
20
+ from src.style.fingerprinter import StyleFingerprinter
21
+ from src.vocabulary.awl_loader import AWLLoader
22
+
23
+ console = Console()
24
+
25
+
26
+ @click.command()
27
+ @click.option("--config", default="configs/training_config.yaml")
28
+ @click.option("--split", default="test")
29
+ @click.option("--max-samples", default=100, help="Max samples to evaluate")
30
+ def evaluate(config: str, split: str, max_samples: int):
31
+ """Run evaluation on the specified data split."""
32
+ with open(config) as f:
33
+ cfg = yaml.safe_load(f)
34
+
35
+ model_cfg = cfg.get("model", {})
36
+ gen_cfg = cfg.get("generation", {})
37
+
38
+ checkpoint = "checkpoints/best_model"
39
+ try:
40
+ from transformers import AutoTokenizer, AutoModelForSeq2SeqLM
41
+ model = AutoModelForSeq2SeqLM.from_pretrained(checkpoint)
42
+ tokenizer = AutoTokenizer.from_pretrained(checkpoint)
43
+ except Exception:
44
+ model, tokenizer, _ = load_model_and_tokenizer(model_cfg.get("key", "flan-t5-large"), quantize=False, use_lora=False)
45
+ model.eval()
46
+
47
+ data_path = cfg.get("data", {}).get(f"{split}_path", f"data/processed/{split}.jsonl")
48
+ sources, references = [], []
49
+ with open(data_path) as f:
50
+ for i, line in enumerate(f):
51
+ if i >= max_samples:
52
+ break
53
+ obj = json.loads(line.strip())
54
+ sources.append(obj["input"])
55
+ references.append(obj["target"])
56
+
57
+ prefix = "Correct the following text for grammar, spelling, and clarity. Text to correct: "
58
+ predictions = batch_generate(model, tokenizer, [prefix + s for s in sources], gen_cfg)
59
+
60
+ gleu_scorer = GLEUScorer()
61
+ gleu = gleu_scorer.compute_gleu(predictions, references)
62
+ bert_p, bert_r, bert_f1 = gleu_scorer.compute_bert_score(predictions, references)
63
+
64
+ errant_scores = ERRANTEvaluator().evaluate(sources, predictions, references)
65
+
66
+ fp = StyleFingerprinter(spacy_model="en_core_web_sm")
67
+ style_scores = StyleEvaluator(fp, AWLLoader()).evaluate_batch(sources, predictions, references)
68
+
69
+ table = Table(title=f"Evaluation ({split}, {len(sources)} samples)")
70
+ table.add_column("Metric", style="cyan")
71
+ table.add_column("Score", style="green")
72
+ table.add_row("GLEU", f"{gleu:.2f}")
73
+ table.add_row("BERTScore F1", f"{bert_f1:.4f}")
74
+ table.add_row("ERRANT F0.5", f"{errant_scores['f0.5']:.4f}")
75
+ table.add_row("Style Similarity", f"{style_scores['style_similarity_mean']:.4f}")
76
+ table.add_row("AWL Coverage", f"{style_scores['awl_coverage_mean']:.4f}")
77
+ console.print(table)
78
+
79
+ results = {"gleu": gleu, "bert_f1": bert_f1, "errant": errant_scores, "style": style_scores}
80
+ with open(f"logs/eval_results_{split}.json", "w") as f:
81
+ json.dump(results, f, indent=2)
82
+
83
+
84
+ if __name__ == "__main__":
85
+ evaluate()
scripts/preprocess_data.py ADDED
@@ -0,0 +1,206 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """
2
+ Converts all raw dataset formats into unified JSONL training format.
3
+ Output schema per line:
4
+ {"input": "...", "target": "...", "source": "fce|wi_locness|jfleg|synthetic"}
5
+
6
+ Datasets handled:
7
+ - FCE v2.1 (BEA-2019 format): data/raw/fce/json/*.json
8
+ - W&I+LOCNESS v2.1 (BEA-2019 format): data/raw/wi+locness/json/*.json
9
+ - JFLEG: data/raw/jfleg/*.src + *.ref*
10
+
11
+ Run: python scripts/preprocess_data.py
12
+ """
13
+
14
+ import json
15
+ import os
16
+ from pathlib import Path
17
+
18
+
19
+ def apply_bea19_edits(text: str, edits_block: list) -> str:
20
+ """
21
+ Apply BEA-2019 character-level edits to produce corrected text.
22
+
23
+ edits_block format: [annotator_id, [(start, end, replacement, [error_type]), ...]]
24
+ We use the first annotator's corrections.
25
+ Edits are applied in reverse order to preserve character offsets.
26
+ """
27
+ if not edits_block or len(edits_block) == 0:
28
+ return text
29
+
30
+ # Take first annotator's edits
31
+ annotator_edits = edits_block[0][1]
32
+
33
+ # Sort by start position descending to apply from end to preserve offsets
34
+ sorted_edits = sorted(annotator_edits, key=lambda e: e[0], reverse=True)
35
+
36
+ result = text
37
+ for edit in sorted_edits:
38
+ start = edit[0]
39
+ end = edit[1]
40
+ replacement = edit[2]
41
+
42
+ # Skip null replacements (no correction needed) and noop edits
43
+ if replacement is None:
44
+ continue
45
+
46
+ result = result[:start] + replacement + result[end:]
47
+
48
+ return result
49
+
50
+
51
+ def process_bea19_json(json_path: str, source_name: str, out_file):
52
+ """
53
+ Process a BEA-2019 format JSON file (FCE or W&I+LOCNESS).
54
+ Each line is a JSON object with 'text' and 'edits' fields.
55
+ Produces (input=original, target=corrected) pairs.
56
+ """
57
+ count = 0
58
+ with open(json_path) as f:
59
+ for line in f:
60
+ line = line.strip()
61
+ if not line:
62
+ continue
63
+ obj = json.loads(line)
64
+ original = obj["text"]
65
+ edits = obj.get("edits", [])
66
+ corrected = apply_bea19_edits(original, edits)
67
+
68
+ # Only include if there were actual corrections
69
+ if original.strip() != corrected.strip() and corrected.strip():
70
+ out_file.write(json.dumps({
71
+ "input": original,
72
+ "target": corrected,
73
+ "source": source_name,
74
+ }) + "\n")
75
+ count += 1
76
+ return count
77
+
78
+
79
+ def process_fce(raw_dir: str, out_file) -> int:
80
+ """Process all FCE JSON files."""
81
+ total = 0
82
+ json_dir = Path(raw_dir) / "json"
83
+ if not json_dir.exists():
84
+ print(f" ⚠ FCE directory not found: {json_dir}")
85
+ return 0
86
+ for json_file in sorted(json_dir.glob("*.json")):
87
+ n = process_bea19_json(str(json_file), "fce", out_file)
88
+ print(f" {json_file.name}: {n} pairs")
89
+ total += n
90
+ return total
91
+
92
+
93
+ def process_wi_locness(raw_dir: str, out_file) -> int:
94
+ """Process all W&I+LOCNESS JSON files."""
95
+ total = 0
96
+ json_dir = Path(raw_dir) / "json"
97
+ if not json_dir.exists():
98
+ print(f" ⚠ W&I+LOCNESS directory not found: {json_dir}")
99
+ return 0
100
+ for json_file in sorted(json_dir.glob("*.json")):
101
+ n = process_bea19_json(str(json_file), "wi_locness", out_file)
102
+ print(f" {json_file.name}: {n} pairs")
103
+ total += n
104
+ return total
105
+
106
+
107
+ def process_jfleg(raw_dir: str, out_file) -> int:
108
+ """
109
+ JFLEG: .src files (original) and .ref0..ref3 (4 human corrections).
110
+ Each reference becomes a separate training pair.
111
+ """
112
+ total = 0
113
+ src_files = list(Path(raw_dir).glob("*.src"))
114
+ if not src_files:
115
+ print(f" ⚠ JFLEG directory empty or not found: {raw_dir}")
116
+ return 0
117
+ for src_file in src_files:
118
+ refs = [src_file.with_suffix(f".ref{i}") for i in range(4)]
119
+ with open(src_file) as sf:
120
+ src_lines = sf.readlines()
121
+ for ref_path in refs:
122
+ if ref_path.exists():
123
+ with open(ref_path) as rf:
124
+ ref_lines = rf.readlines()
125
+ for src, ref in zip(src_lines, ref_lines):
126
+ src, ref = src.strip(), ref.strip()
127
+ if src and ref and src != ref:
128
+ out_file.write(json.dumps({
129
+ "input": src,
130
+ "target": ref,
131
+ "source": "jfleg",
132
+ }) + "\n")
133
+ total += 1
134
+ return total
135
+
136
+
137
+ def create_splits(train_path: str, val_ratio: float = 0.1):
138
+ """Split train.jsonl into train and val sets."""
139
+ import random
140
+ random.seed(42)
141
+
142
+ with open(train_path) as f:
143
+ lines = f.readlines()
144
+
145
+ random.shuffle(lines)
146
+ val_size = int(len(lines) * val_ratio)
147
+ val_lines = lines[:val_size]
148
+ train_lines = lines[val_size:]
149
+
150
+ with open(train_path, "w") as f:
151
+ f.writelines(train_lines)
152
+
153
+ val_path = train_path.replace("train.jsonl", "val.jsonl")
154
+ with open(val_path, "w") as f:
155
+ f.writelines(val_lines)
156
+
157
+ # Also create a small test split from val
158
+ test_size = min(len(val_lines) // 2, 500)
159
+ test_lines = val_lines[:test_size]
160
+ test_path = train_path.replace("train.jsonl", "test.jsonl")
161
+ with open(test_path, "w") as f:
162
+ f.writelines(test_lines)
163
+
164
+ return len(train_lines), len(val_lines), len(test_lines)
165
+
166
+
167
+ def main():
168
+ os.makedirs("data/processed", exist_ok=True)
169
+
170
+ print("=== Preprocessing datasets into unified JSONL ===\n")
171
+ total = 0
172
+
173
+ with open("data/processed/train.jsonl", "w") as out:
174
+ # FCE
175
+ print("Processing FCE...")
176
+ n = process_fce("data/raw/fce", out)
177
+ print(f" Total FCE: {n} pairs\n")
178
+ total += n
179
+
180
+ # W&I+LOCNESS
181
+ print("Processing W&I+LOCNESS...")
182
+ n = process_wi_locness("data/raw/wi+locness", out)
183
+ print(f" Total W&I+LOCNESS: {n} pairs\n")
184
+ total += n
185
+
186
+ # JFLEG
187
+ print("Processing JFLEG...")
188
+ n = process_jfleg("data/raw/jfleg", out)
189
+ print(f" Total JFLEG: {n} pairs\n")
190
+ total += n
191
+
192
+ print(f"Total examples in train.jsonl: {total}")
193
+
194
+ # Create train/val/test splits
195
+ print("\nSplitting into train/val/test...")
196
+ n_train, n_val, n_test = create_splits("data/processed/train.jsonl")
197
+ print(f" Train: {n_train} | Val: {n_val} | Test: {n_test}")
198
+
199
+ print("\n✓ Preprocessing complete.")
200
+ print(" data/processed/train.jsonl")
201
+ print(" data/processed/val.jsonl")
202
+ print(" data/processed/test.jsonl")
203
+
204
+
205
+ if __name__ == "__main__":
206
+ main()
scripts/pretrain_human_pattern_classifier.py ADDED
@@ -0,0 +1,201 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """
2
+ Pre-trains the HumanPatternClassifier on both Kaggle datasets.
3
+ Run this BEFORE the main training loop.
4
+ The saved classifier weights are then loaded frozen during main training.
5
+
6
+ Run: python scripts/pretrain_human_pattern_classifier.py
7
+ Output: checkpoints/human_pattern_classifier.pt
8
+ """
9
+
10
+ import torch
11
+ import torch.nn as nn
12
+ from torch.utils.data import DataLoader, random_split
13
+ from sklearn.metrics import accuracy_score, roc_auc_score
14
+ import numpy as np
15
+ from loguru import logger
16
+ import os
17
+ import yaml
18
+
19
+ try:
20
+ import wandb
21
+ HAS_WANDB = True
22
+ except ImportError:
23
+ HAS_WANDB = False
24
+
25
+ from src.training.human_pattern_extractor import (
26
+ HumanPatternFeatureExtractor,
27
+ KaggleHumanPatternDataset,
28
+ HumanPatternClassifier,
29
+ )
30
+
31
+
32
+ def train_classifier(config_path: str = "configs/training_config.yaml"):
33
+ """Pre-train the human pattern classifier on Kaggle datasets."""
34
+ # Load config
35
+ with open(config_path) as f:
36
+ config = yaml.safe_load(f)
37
+
38
+ hp_cfg = config.get("human_pattern", {})
39
+
40
+ # Init W&B (optional)
41
+ if HAS_WANDB and os.environ.get("WANDB_API_KEY"):
42
+ wandb.init(project="dyslexia-rewriter", name="human-pattern-pretrain", tags=["pretrain"])
43
+ else:
44
+ logger.info("W&B not configured, logging to console only")
45
+
46
+ # Create extractor
47
+ logger.info("Creating feature extractor...")
48
+ extractor = HumanPatternFeatureExtractor(spacy_model="en_core_web_sm")
49
+
50
+ # Load datasets
51
+ shanegerami_path = hp_cfg.get("shanegerami_path", "data/raw/shanegerami/AI_Human.csv")
52
+ starblasters_path = hp_cfg.get("starblasters_path", "data/raw/starblasters8/data.parquet")
53
+ max_samples = hp_cfg.get("max_samples_per_source", 50000)
54
+
55
+ logger.info("Loading datasets...")
56
+ dataset = KaggleHumanPatternDataset(
57
+ shanegerami_path=shanegerami_path,
58
+ starblasters_path=starblasters_path,
59
+ extractor=extractor,
60
+ max_samples_per_source=max_samples,
61
+ )
62
+
63
+ if len(dataset) == 0:
64
+ logger.error("No data loaded! Check dataset paths.")
65
+ return
66
+
67
+ # Pre-compute features
68
+ dataset.precompute_features()
69
+
70
+ # Train/val split (80/20)
71
+ val_size = int(len(dataset) * 0.2)
72
+ train_size = len(dataset) - val_size
73
+ train_dataset, val_dataset = random_split(
74
+ dataset,
75
+ [train_size, val_size],
76
+ generator=torch.Generator().manual_seed(42),
77
+ )
78
+
79
+ # Create dataloaders
80
+ batch_size = hp_cfg.get("pretrain_batch_size", 512)
81
+ train_loader = DataLoader(train_dataset, batch_size=batch_size, shuffle=True, num_workers=0)
82
+ val_loader = DataLoader(val_dataset, batch_size=batch_size, shuffle=False, num_workers=0)
83
+
84
+ logger.info(f"Train: {train_size} | Val: {val_size} | Batch size: {batch_size}")
85
+
86
+ # Create model
87
+ classifier = HumanPatternClassifier(input_dim=17, hidden_dim=128)
88
+ device = "cpu"
89
+ classifier = classifier.to(device)
90
+
91
+ # Training setup
92
+ epochs = hp_cfg.get("pretrain_epochs", 20)
93
+ lr = hp_cfg.get("pretrain_lr", 1e-3)
94
+ target_auc = hp_cfg.get("target_auc", 0.88)
95
+
96
+ optimizer = torch.optim.AdamW(classifier.parameters(), lr=lr, weight_decay=1e-4)
97
+ scheduler = torch.optim.lr_scheduler.CosineAnnealingLR(optimizer, T_max=epochs)
98
+ criterion = nn.BCELoss()
99
+
100
+ best_auc = 0.0
101
+ os.makedirs("checkpoints", exist_ok=True)
102
+
103
+ # Training loop
104
+ for epoch in range(1, epochs + 1):
105
+ classifier.train()
106
+ train_loss = 0.0
107
+ train_preds = []
108
+ train_labels = []
109
+
110
+ for features, labels in train_loader:
111
+ features = features.to(device)
112
+ labels = labels.float().to(device)
113
+
114
+ optimizer.zero_grad()
115
+ outputs = classifier(features)
116
+ loss = criterion(outputs, labels)
117
+ loss.backward()
118
+
119
+ # Gradient clipping for stability
120
+ torch.nn.utils.clip_grad_norm_(classifier.parameters(), max_norm=1.0)
121
+
122
+ optimizer.step()
123
+
124
+ train_loss += loss.item() * features.size(0)
125
+ train_preds.extend(outputs.detach().cpu().numpy())
126
+ train_labels.extend(labels.cpu().numpy())
127
+
128
+ scheduler.step()
129
+ train_loss /= train_size
130
+
131
+ # Validation
132
+ classifier.eval()
133
+ val_preds = []
134
+ val_labels = []
135
+ val_loss = 0.0
136
+
137
+ with torch.no_grad():
138
+ for features, labels in val_loader:
139
+ features = features.to(device)
140
+ labels = labels.float().to(device)
141
+ outputs = classifier(features)
142
+ loss = criterion(outputs, labels)
143
+ val_loss += loss.item() * features.size(0)
144
+ val_preds.extend(outputs.cpu().numpy())
145
+ val_labels.extend(labels.cpu().numpy())
146
+
147
+ val_loss /= val_size
148
+
149
+ # Metrics
150
+ train_preds_binary = [1 if p > 0.5 else 0 for p in train_preds]
151
+ val_preds_binary = [1 if p > 0.5 else 0 for p in val_preds]
152
+
153
+ train_acc = accuracy_score(train_labels, train_preds_binary)
154
+ val_acc = accuracy_score(val_labels, val_preds_binary)
155
+
156
+ try:
157
+ train_auc = roc_auc_score(train_labels, train_preds)
158
+ val_auc = roc_auc_score(val_labels, val_preds)
159
+ except ValueError:
160
+ train_auc = 0.0
161
+ val_auc = 0.0
162
+
163
+ logger.info(
164
+ f"Epoch {epoch}/{epochs} | "
165
+ f"Train Loss: {train_loss:.4f} Acc: {train_acc:.4f} AUC: {train_auc:.4f} | "
166
+ f"Val Loss: {val_loss:.4f} Acc: {val_acc:.4f} AUC: {val_auc:.4f}"
167
+ )
168
+
169
+ # Log to W&B
170
+ if HAS_WANDB and wandb.run is not None:
171
+ wandb.log({
172
+ "epoch": epoch,
173
+ "train/loss": train_loss,
174
+ "train/accuracy": train_acc,
175
+ "train/auc": train_auc,
176
+ "val/loss": val_loss,
177
+ "val/accuracy": val_acc,
178
+ "val/auc": val_auc,
179
+ "lr": scheduler.get_last_lr()[0],
180
+ })
181
+
182
+ # Save best model by AUC
183
+ if val_auc > best_auc:
184
+ best_auc = val_auc
185
+ save_path = hp_cfg.get("classifier_path", "checkpoints/human_pattern_classifier.pt")
186
+ torch.save(classifier.state_dict(), save_path)
187
+ logger.info(f" ✓ New best AUC: {val_auc:.4f} — saved to {save_path}")
188
+
189
+ # Early stopping if target AUC reached
190
+ if val_auc >= target_auc:
191
+ logger.info(f"Target AUC {target_auc} reached at epoch {epoch}! Stopping.")
192
+ break
193
+
194
+ logger.info(f"\nPre-training complete. Best AUC: {best_auc:.4f}")
195
+
196
+ if HAS_WANDB and wandb.run is not None:
197
+ wandb.finish()
198
+
199
+
200
+ if __name__ == "__main__":
201
+ train_classifier()
scripts/run_inference.py ADDED
@@ -0,0 +1,59 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """
2
+ Interactive inference script.
3
+ Run: python scripts/run_inference.py --config configs/inference_config.yaml
4
+ """
5
+
6
+ import click
7
+ import yaml
8
+ from rich.console import Console
9
+ from rich.panel import Panel
10
+ from rich.table import Table
11
+ from src.inference.corrector import AcademicCorrector
12
+
13
+ console = Console()
14
+
15
+
16
+ @click.command()
17
+ @click.option("--config", default="configs/inference_config.yaml")
18
+ @click.option("--text", default=None, help="Text to correct")
19
+ @click.option("--master-copy", default=None, help="Optional master copy for style matching")
20
+ @click.option("--style-alpha", default=0.6, help="Style blend weight (0=master, 1=user)")
21
+ def run_inference(config: str, text: str, master_copy: str, style_alpha: float):
22
+ """Run inference on text input."""
23
+ with open(config) as f:
24
+ cfg = yaml.safe_load(f)
25
+
26
+ console.print("[bold cyan]Loading model...[/]")
27
+ corrector = AcademicCorrector(cfg)
28
+ console.print("[bold green]✓ Model loaded[/]")
29
+
30
+ if text:
31
+ result = corrector.correct(text, master_copy=master_copy, style_alpha=style_alpha)
32
+ console.print(Panel(result.original, title="Original", border_style="red"))
33
+ console.print(Panel(result.corrected, title="Corrected", border_style="green"))
34
+ table = Table(title="Metrics")
35
+ table.add_column("Metric")
36
+ table.add_column("Value")
37
+ table.add_row("Style Similarity", f"{result.style_similarity:.4f}")
38
+ table.add_row("AWL Coverage", f"{result.awl_coverage:.4f}")
39
+ for k, v in result.readability.items():
40
+ table.add_row(k, f"{v:.2f}")
41
+ console.print(table)
42
+ else:
43
+ console.print("[bold yellow]Interactive mode. Type text to correct (Ctrl+C to exit).[/]")
44
+ while True:
45
+ try:
46
+ console.print()
47
+ user_input = console.input("[bold cyan]Enter text: [/]")
48
+ if not user_input.strip():
49
+ continue
50
+ result = corrector.correct(user_input, style_alpha=style_alpha)
51
+ console.print(Panel(result.corrected, title="Corrected", border_style="green"))
52
+ console.print(f" Style: {result.style_similarity:.3f} | AWL: {result.awl_coverage:.3f}")
53
+ except KeyboardInterrupt:
54
+ console.print("\n[bold red]Goodbye![/]")
55
+ break
56
+
57
+
58
+ if __name__ == "__main__":
59
+ run_inference()
scripts/train.py ADDED
@@ -0,0 +1,390 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """
2
+ Full training entry point.
3
+ Run: python scripts/train.py --config configs/training_config.yaml
4
+ """
5
+
6
+ import click
7
+ import yaml
8
+ import torch
9
+ import os
10
+ import gc
11
+ from transformers import TrainingArguments, Seq2SeqTrainingArguments
12
+ from loguru import logger
13
+
14
+ try:
15
+ import wandb
16
+ HAS_WANDB = True
17
+ except ImportError:
18
+ HAS_WANDB = False
19
+
20
+ from src.model.base_model import load_model_and_tokenizer
21
+ from src.model.style_conditioner import StyleConditioner
22
+ from src.training.dataset import WritingCorrectionDataset
23
+ from src.training.loss_functions import CombinedCorrectionLoss, CombinedCorrectionLossV2
24
+ from src.training.trainer import CorrectionTrainer
25
+ from src.training.callbacks import StyleMetricsCallback, EarlyStoppingOnStyleDrift
26
+ from src.style.fingerprinter import StyleFingerprinter
27
+ from src.evaluation.gleu_scorer import GLEUScorer
28
+
29
+
30
+ # ── Hybrid GPU Management ───────────────────────────────────────────────────
31
+ def _setup_device():
32
+ """Detect GPU and configure hybrid VRAM management.
33
+
34
+ Returns (device, gpu_info) where gpu_info is a dict with:
35
+ - available: bool
36
+ - name: str
37
+ - vram_total_mb: int
38
+ - vram_free_mb: int
39
+ - compute_cap: tuple
40
+ """
41
+ gpu_info = {"available": False, "name": "CPU", "vram_total_mb": 0,
42
+ "vram_free_mb": 0, "compute_cap": (0, 0)}
43
+
44
+ if not torch.cuda.is_available():
45
+ logger.info("No GPU detected — training on CPU")
46
+ return "cpu", gpu_info
47
+
48
+ gpu_info["available"] = True
49
+ gpu_info["name"] = torch.cuda.get_device_name(0)
50
+ gpu_info["compute_cap"] = torch.cuda.get_device_capability(0)
51
+
52
+ # Query actual free VRAM
53
+ vram_total = torch.cuda.get_device_properties(0).total_memory // (1024 * 1024)
54
+ vram_reserved = torch.cuda.memory_reserved(0) // (1024 * 1024)
55
+ vram_allocated = torch.cuda.memory_allocated(0) // (1024 * 1024)
56
+ vram_free = vram_total - vram_allocated
57
+
58
+ gpu_info["vram_total_mb"] = vram_total
59
+ gpu_info["vram_free_mb"] = vram_free
60
+
61
+ logger.info(
62
+ f"GPU: {gpu_info['name']} | "
63
+ f"VRAM: {vram_allocated}MB used / {vram_total}MB total ({vram_free}MB free) | "
64
+ f"Compute: {gpu_info['compute_cap']}"
65
+ )
66
+
67
+ # Leave headroom for the system — reserve at most 85% of free VRAM
68
+ # This prevents the desktop/compositor from starving
69
+ usable_vram_mb = int(vram_free * 0.85)
70
+ if usable_vram_mb > 0:
71
+ # Set PyTorch memory limit to avoid hogging all VRAM
72
+ fraction = min(usable_vram_mb / vram_total, 0.90)
73
+ torch.cuda.set_per_process_memory_fraction(fraction, 0)
74
+ logger.info(
75
+ f"Hybrid GPU mode: capped PyTorch VRAM to {fraction:.0%} "
76
+ f"(~{int(vram_total * fraction)}MB), leaving room for system"
77
+ )
78
+
79
+ return "cuda", gpu_info
80
+
81
+
82
+ def _auto_batch_size(model_key: str, device: str, gpu_info: dict,
83
+ config_batch: int) -> int:
84
+ """Pick optimal batch size based on model size and available resources."""
85
+ if device == "cpu":
86
+ # CPU: T5-Small can handle batch=8 with 32GB RAM, larger models less
87
+ if "small" in model_key:
88
+ return min(config_batch, 8)
89
+ return min(config_batch, 2)
90
+
91
+ # GPU: estimate based on free VRAM
92
+ free_mb = gpu_info["vram_free_mb"]
93
+
94
+ # Rough VRAM per sample estimates (bf16, seq_len=128):
95
+ # T5-Small: ~120MB model + ~50MB/sample
96
+ # T5-Base: ~350MB model + ~90MB/sample
97
+ # T5-Large: ~900MB model + ~150MB/sample
98
+ model_vram_estimates = {
99
+ "flan-t5-small": {"model_mb": 160, "per_sample_mb": 60},
100
+ "flan-t5-base": {"model_mb": 400, "per_sample_mb": 100},
101
+ "flan-t5-large": {"model_mb": 1000, "per_sample_mb": 160},
102
+ "flan-t5-xl": {"model_mb": 3000, "per_sample_mb": 300},
103
+ }
104
+ est = model_vram_estimates.get(model_key, {"model_mb": 500, "per_sample_mb": 120})
105
+
106
+ # Available for batches = free VRAM - model footprint - 300MB safety buffer
107
+ available_for_batches = free_mb - est["model_mb"] - 300
108
+ if available_for_batches <= 0:
109
+ logger.warning("Very tight VRAM — using batch_size=1")
110
+ return 1
111
+
112
+ max_batch = max(1, available_for_batches // est["per_sample_mb"])
113
+ optimal = min(config_batch, max_batch)
114
+
115
+ logger.info(
116
+ f"Auto batch size: {optimal} "
117
+ f"(model ~{est['model_mb']}MB + {optimal}×{est['per_sample_mb']}MB "
118
+ f"= ~{est['model_mb'] + optimal * est['per_sample_mb']}MB / {free_mb}MB free)"
119
+ )
120
+ return max(1, optimal)
121
+
122
+
123
+ @click.command()
124
+ @click.option("--config", default="configs/training_config.yaml")
125
+ @click.option("--use-v2-loss", is_flag=True, help="Use V2 loss with human pattern term")
126
+ def train(config: str, use_v2_loss: bool):
127
+ """Launch the full training pipeline."""
128
+ # Step 1: Load config
129
+ logger.info("Step 1: Loading config...")
130
+ with open(config) as f:
131
+ cfg = yaml.safe_load(f)
132
+
133
+ model_cfg = cfg.get("model", {})
134
+ lora_cfg = cfg.get("lora", {})
135
+ data_cfg = cfg.get("data", {})
136
+ train_cfg = cfg.get("training", {})
137
+ loss_cfg = cfg.get("loss", {})
138
+ gen_cfg = cfg.get("generation", {})
139
+
140
+ # Step 2: Initialise W&B (optional)
141
+ logger.info("Step 2: Initialising experiment tracking...")
142
+ if HAS_WANDB and os.environ.get("WANDB_API_KEY"):
143
+ wandb.init(
144
+ project="dyslexia-rewriter",
145
+ name=f"train-{model_cfg.get('key', 'flan-t5')}",
146
+ config=cfg,
147
+ )
148
+ else:
149
+ logger.info("W&B not configured, logging to TensorBoard only")
150
+ os.environ["WANDB_DISABLED"] = "true"
151
+
152
+ # Step 3: Detect GPU and configure hybrid VRAM management
153
+ logger.info("Step 3: Setting up device (hybrid GPU mode)...")
154
+ device, gpu_info = _setup_device()
155
+
156
+ # Step 4: Load model + tokenizer
157
+ logger.info("Step 4: Loading model and tokenizer...")
158
+ model_key = model_cfg.get("key", "flan-t5-small")
159
+ model, tokenizer, is_seq2seq = load_model_and_tokenizer(
160
+ model_key=model_key,
161
+ quantize=model_cfg.get("quantize", False),
162
+ use_lora=model_cfg.get("use_lora", True),
163
+ lora_config_dict=lora_cfg,
164
+ )
165
+
166
+ # Required for PEFT + gradient checkpointing compatibility
167
+ if hasattr(model, 'enable_input_require_grads'):
168
+ model.enable_input_require_grads()
169
+
170
+ # ── torch.compile for fused kernels (PyTorch 2.x) ───────────────────────
171
+ if hasattr(torch, "compile") and device == "cuda":
172
+ try:
173
+ # "default" mode: fuses kernels via Triton without CUDA graphs.
174
+ # "reduce-overhead" uses CUDA graphs which break with LoRA/PEFT
175
+ # (tensor outputs get overwritten between graph replays).
176
+ logger.info("Applying torch.compile(mode='default')...")
177
+ model = torch.compile(model, mode="default")
178
+ logger.info("✓ torch.compile applied — first few steps will be slower (compiling)")
179
+ except Exception as e:
180
+ logger.warning(f"torch.compile failed (non-fatal): {e}")
181
+
182
+ # Step 5: Create fingerprinter
183
+ logger.info("Step 5: Creating style fingerprinter...")
184
+ fingerprinter = StyleFingerprinter(
185
+ spacy_model="en_core_web_sm", # Use small model for training speed
186
+ awl_path="data/awl/coxhead_awl.txt",
187
+ )
188
+
189
+ # Step 6: Create datasets
190
+ logger.info("Step 6: Loading datasets...")
191
+ train_dataset = WritingCorrectionDataset(
192
+ data_path=data_cfg.get("train_path", "data/processed/train.jsonl"),
193
+ tokenizer=tokenizer,
194
+ fingerprinter=fingerprinter,
195
+ max_input_length=data_cfg.get("max_input_length", 512),
196
+ max_target_length=data_cfg.get("max_target_length", 512),
197
+ augment_with_synthetic=data_cfg.get("augment_synthetic", True),
198
+ synthetic_ratio=data_cfg.get("synthetic_ratio", 0.3),
199
+ )
200
+
201
+ val_dataset = WritingCorrectionDataset(
202
+ data_path=data_cfg.get("val_path", "data/processed/val.jsonl"),
203
+ tokenizer=tokenizer,
204
+ fingerprinter=fingerprinter,
205
+ max_input_length=data_cfg.get("max_input_length", 512),
206
+ max_target_length=data_cfg.get("max_target_length", 512),
207
+ augment_with_synthetic=False,
208
+ )
209
+
210
+ logger.info(f"Train: {len(train_dataset)} | Val: {len(val_dataset)}")
211
+
212
+ # Free memory after dataset loading
213
+ gc.collect()
214
+ if device == "cuda":
215
+ torch.cuda.empty_cache()
216
+
217
+ # Use simple CE-only loss for training — aux models (sentence-transformer,
218
+ # GPT-2, HP classifier) are NOT loaded since they provide no gradient signal
219
+ # (they decode via argmax under no_grad). This saves ~1GB+ memory.
220
+ from torch import nn
221
+ class CEOnlyLoss(nn.Module):
222
+ """Cross-entropy only loss — the only loss that provides gradient signal."""
223
+ def __init__(self):
224
+ super().__init__()
225
+ self.ce_loss = nn.CrossEntropyLoss(ignore_index=-100)
226
+
227
+ def forward(self, logits, labels, **kwargs):
228
+ if logits.dim() == 3:
229
+ ce_logits = logits.view(-1, logits.size(-1))
230
+ ce_labels = labels.view(-1)
231
+ else:
232
+ ce_logits = logits
233
+ ce_labels = labels
234
+ l_ce = self.ce_loss(ce_logits, ce_labels)
235
+ return {"total_loss": l_ce, "ce_loss": l_ce}
236
+
237
+ loss_fn = CEOnlyLoss()
238
+ logger.info("Using CE-only loss (aux models skipped to save memory)")
239
+
240
+ # Step 8: Create training arguments
241
+ logger.info("Step 8: Creating training arguments...")
242
+
243
+ # Auto-detect precision support
244
+ use_bf16 = False
245
+ use_fp16 = False
246
+ if device == "cuda":
247
+ if gpu_info["compute_cap"][0] >= 8:
248
+ use_bf16 = True
249
+ logger.info("Using BF16 (Ampere+ GPU)")
250
+ else:
251
+ use_fp16 = True
252
+ logger.info("Using FP16 (pre-Ampere GPU)")
253
+ elif device == "cpu":
254
+ # Zen 3+ CPUs (Ryzen 5000+) support BF16 in PyTorch 2.x
255
+ try:
256
+ test = torch.tensor([1.0], dtype=torch.bfloat16)
257
+ _ = test + test # Test BF16 compute works
258
+ use_bf16 = True
259
+ logger.info("Using BF16 on CPU (Zen 3+ detected)")
260
+ except Exception:
261
+ logger.info("BF16 not supported on this CPU, using FP32")
262
+
263
+ # Smart batch size based on model + available resources
264
+ config_batch = train_cfg.get("per_device_train_batch_size", 4)
265
+ batch_size = _auto_batch_size(model_key, device, gpu_info, config_batch)
266
+
267
+ # Smart gradient checkpointing:
268
+ # - ENABLE for large models (saves VRAM at cost of compute)
269
+ # - DISABLE for small models (they fit in VRAM, checkpointing is pure overhead)
270
+ # - ALWAYS DISABLE on CPU (plenty of RAM, checkpointing wastes CPU cycles)
271
+ large_models = {"flan-t5-large", "flan-t5-xl", "llama-3.1-8b"}
272
+ use_grad_ckpt = model_key in large_models and device == "cuda"
273
+ if use_grad_ckpt:
274
+ logger.info("Gradient checkpointing: ON (large model, saving VRAM)")
275
+ else:
276
+ logger.info(f"Gradient checkpointing: OFF ({'small model fits in VRAM' if device == 'cuda' else 'CPU has plenty of RAM'})")
277
+
278
+ # Dataloader workers: Python 3.14 changed default start method to "forkserver"
279
+ # on Linux, which hits "too many fds" with num_workers > 0.
280
+ # Use 0 (main-process loading) — dataset is pre-tokenized so overhead is minimal.
281
+ num_workers = train_cfg.get("dataloader_num_workers", 0)
282
+
283
+ # Filter report_to to only available tools
284
+ report_to = []
285
+ if HAS_WANDB and os.environ.get("WANDB_API_KEY"):
286
+ report_to.append("wandb")
287
+ report_to.append("tensorboard")
288
+
289
+ training_args = TrainingArguments(
290
+ output_dir=train_cfg.get("output_dir", "checkpoints/"),
291
+ num_train_epochs=train_cfg.get("num_train_epochs", 5),
292
+ per_device_train_batch_size=batch_size,
293
+ per_device_eval_batch_size=train_cfg.get("per_device_eval_batch_size", 8) if device == "cuda" else 2,
294
+ gradient_accumulation_steps=train_cfg.get("gradient_accumulation_steps", 8),
295
+ learning_rate=train_cfg.get("learning_rate", 3e-4),
296
+ lr_scheduler_type=train_cfg.get("lr_scheduler_type", "cosine"),
297
+ warmup_ratio=train_cfg.get("warmup_ratio", 0.05),
298
+ weight_decay=train_cfg.get("weight_decay", 0.01),
299
+ fp16=use_fp16,
300
+ bf16=use_bf16,
301
+ eval_strategy=train_cfg.get("evaluation_strategy", "steps"),
302
+ eval_steps=train_cfg.get("eval_steps", 100),
303
+ save_strategy=train_cfg.get("save_strategy", "steps"),
304
+ save_steps=train_cfg.get("save_steps", 100),
305
+ save_total_limit=train_cfg.get("save_total_limit", 3),
306
+ load_best_model_at_end=False, # Handled manually below (PEFT adapters break Trainer's loader)
307
+ metric_for_best_model=train_cfg.get("metric_for_best_model", "eval_loss"),
308
+ greater_is_better=train_cfg.get("greater_is_better", False),
309
+ logging_dir=train_cfg.get("logging_dir", "logs/"),
310
+ logging_steps=train_cfg.get("logging_steps", 25),
311
+ report_to=report_to,
312
+ dataloader_num_workers=num_workers,
313
+ seed=train_cfg.get("seed", 42),
314
+ remove_unused_columns=False, # We have custom columns (style_vector, etc.)
315
+ gradient_checkpointing=use_grad_ckpt,
316
+ )
317
+
318
+ # Step 9: Create trainer
319
+ logger.info("Step 9: Creating trainer...")
320
+ trainer = CorrectionTrainer(
321
+ loss_fn=loss_fn,
322
+ fingerprinter=fingerprinter,
323
+ tokenizer=tokenizer,
324
+ model=model,
325
+ args=training_args,
326
+ train_dataset=train_dataset,
327
+ eval_dataset=val_dataset,
328
+ callbacks=[
329
+ StyleMetricsCallback(),
330
+ EarlyStoppingOnStyleDrift(min_style_similarity=0.75),
331
+ ],
332
+ )
333
+
334
+ # Step 10: Train
335
+ logger.info("Step 10: Starting training...")
336
+ logger.info(
337
+ f"Config summary: model={model_key} | batch={batch_size} | "
338
+ f"accum={training_args.gradient_accumulation_steps} | "
339
+ f"effective_batch={batch_size * training_args.gradient_accumulation_steps} | "
340
+ f"epochs={training_args.num_train_epochs} | "
341
+ f"precision={'bf16' if use_bf16 else 'fp16' if use_fp16 else 'fp32'} | "
342
+ f"grad_ckpt={use_grad_ckpt} | device={device}"
343
+ )
344
+ trainer.train()
345
+
346
+ # Step 11: Save best model (manual PEFT-aware loading)
347
+ logger.info("Step 11: Saving best model...")
348
+ output_dir = train_cfg.get("output_dir", "checkpoints/")
349
+ save_path = os.path.join(output_dir, "best_model")
350
+
351
+ # Find best checkpoint from trainer state
352
+ best_ckpt = None
353
+ state_path = os.path.join(output_dir, "trainer_state.json")
354
+ # Check each checkpoint for trainer_state.json
355
+ import glob
356
+ for ckpt_dir in sorted(glob.glob(os.path.join(output_dir, "checkpoint-*"))):
357
+ ts = os.path.join(ckpt_dir, "trainer_state.json")
358
+ if os.path.exists(ts):
359
+ import json as json_mod
360
+ with open(ts) as f:
361
+ state = json_mod.load(f)
362
+ best_path = state.get("best_model_checkpoint")
363
+ if best_path:
364
+ best_ckpt = best_path
365
+
366
+ if best_ckpt and os.path.isdir(best_ckpt):
367
+ logger.info(f"Loading best checkpoint from {best_ckpt}")
368
+ from peft import PeftModel
369
+ # Reload the best adapter weights
370
+ best_adapter = os.path.join(best_ckpt, "adapter_model.safetensors")
371
+ if os.path.exists(best_adapter):
372
+ model.load_adapter(best_ckpt, adapter_name="default")
373
+ logger.info(f"Loaded best adapter from {best_ckpt}")
374
+ else:
375
+ logger.warning(f"No adapter found at {best_ckpt}, saving current model")
376
+ else:
377
+ logger.info("No best checkpoint found, saving final model state")
378
+
379
+ trainer.save_model(save_path)
380
+ tokenizer.save_pretrained(save_path)
381
+ logger.info(f"Model saved to {save_path}")
382
+
383
+ if HAS_WANDB and wandb.run is not None:
384
+ wandb.finish()
385
+
386
+ logger.info("✓ Training complete!")
387
+
388
+
389
+ if __name__ == "__main__":
390
+ train()
src/__init__.py ADDED
File without changes
start.sh ADDED
@@ -0,0 +1,123 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/usr/bin/env bash
2
+ # ═══════════════════════════════════════════════════════════════════════════
3
+ # start.sh — Inference launcher for the Dyslexia Academic Writing Corrector
4
+ # ═══════════════════════════════════════════════════════════════════════════
5
+ #
6
+ # Usage:
7
+ # bash start.sh --cli # Interactive REPL mode
8
+ # bash start.sh --api # FastAPI server mode
9
+ # bash start.sh --cli --text "..." # Single text correction
10
+ # bash start.sh --api --port 8080 # Custom port
11
+ #
12
+ set -euo pipefail
13
+
14
+ # ── Defaults ────────────────────────────────────────────────────────────────
15
+ MODE=""
16
+ CONFIG="configs/inference_config.yaml"
17
+ TEXT=""
18
+ MASTER_COPY=""
19
+ STYLE_ALPHA="0.6"
20
+ PORT="8000"
21
+ WORKERS="1"
22
+
23
+ # ── Colors ──────────────────────────────────────────────────────────────────
24
+ GREEN='\033[0;32m'
25
+ CYAN='\033[0;36m'
26
+ YELLOW='\033[1;33m'
27
+ RED='\033[0;31m'
28
+ BOLD='\033[1m'
29
+ NC='\033[0m'
30
+
31
+ # ── Parse arguments ────────────────────────────────────────────────────────
32
+ while [[ $# -gt 0 ]]; do
33
+ case $1 in
34
+ --cli) MODE="cli"; shift ;;
35
+ --api) MODE="api"; shift ;;
36
+ --config) CONFIG="$2"; shift 2 ;;
37
+ --config=*) CONFIG="${1#*=}"; shift ;;
38
+ --text) TEXT="$2"; shift 2 ;;
39
+ --text=*) TEXT="${1#*=}"; shift ;;
40
+ --master-copy) MASTER_COPY="$2"; shift 2 ;;
41
+ --port) PORT="$2"; shift 2 ;;
42
+ --port=*) PORT="${1#*=}"; shift ;;
43
+ --workers) WORKERS="$2"; shift 2 ;;
44
+ --alpha) STYLE_ALPHA="$2"; shift 2 ;;
45
+ -h|--help)
46
+ echo "Usage: bash start.sh [--cli|--api] [OPTIONS]"
47
+ echo ""
48
+ echo "Modes:"
49
+ echo " --cli Interactive REPL or single-text correction"
50
+ echo " --api Start FastAPI server"
51
+ echo ""
52
+ echo "Options:"
53
+ echo " --config PATH Config file (default: configs/inference_config.yaml)"
54
+ echo " --text TEXT Text to correct (CLI mode, skip interactive)"
55
+ echo " --master-copy Optional master copy for style matching"
56
+ echo " --alpha FLOAT Style blend weight 0-1 (default: 0.6)"
57
+ echo " --port PORT API server port (default: 8000)"
58
+ echo " --workers N API server workers (default: 1)"
59
+ exit 0
60
+ ;;
61
+ *) echo -e "${RED}Unknown option: $1${NC}"; exit 1 ;;
62
+ esac
63
+ done
64
+
65
+ # ── Python detection ───────────────────────────────────────────────────────
66
+ if command -v python3 &>/dev/null; then
67
+ PYTHON=python3
68
+ elif command -v python &>/dev/null; then
69
+ PYTHON=python
70
+ else
71
+ echo -e "${RED}Python not found!${NC}"
72
+ exit 1
73
+ fi
74
+
75
+ # ── Mode selection ─────────────────────────────────────────────────────────
76
+ if [ -z "$MODE" ]; then
77
+ echo ""
78
+ echo -e "${BOLD}╔══════════════════════════════════════════════════════════╗${NC}"
79
+ echo -e "${BOLD}║ Dyslexia Academic Writing Corrector — Inference ║${NC}"
80
+ echo -e "${BOLD}╚══════════════════════════════════════════════════════════╝${NC}"
81
+ echo ""
82
+ echo -e " ${CYAN}1)${NC} Interactive CLI (REPL)"
83
+ echo -e " ${CYAN}2)${NC} API Server (FastAPI)"
84
+ echo ""
85
+ read -rp " Select mode [1/2]: " choice
86
+ case "$choice" in
87
+ 1) MODE="cli" ;;
88
+ 2) MODE="api" ;;
89
+ *) MODE="cli" ;;
90
+ esac
91
+ fi
92
+
93
+ # ── Check model exists ────────────────────────────────────────────────────
94
+ if [ ! -d "checkpoints/best_model" ]; then
95
+ echo -e "${YELLOW}[WARN] No trained model found at checkpoints/best_model${NC}"
96
+ echo -e "${YELLOW} Will use base model. Run train.sh first for best results.${NC}"
97
+ fi
98
+
99
+ # ── Launch ─────────────────────────────────────────────────────────────────
100
+ case "$MODE" in
101
+ cli)
102
+ echo -e "${GREEN}Starting CLI inference...${NC}"
103
+ CLI_ARGS="--config $CONFIG --style-alpha $STYLE_ALPHA"
104
+ if [ -n "$TEXT" ]; then
105
+ CLI_ARGS="$CLI_ARGS --text \"$TEXT\""
106
+ fi
107
+ if [ -n "$MASTER_COPY" ]; then
108
+ CLI_ARGS="$CLI_ARGS --master-copy \"$MASTER_COPY\""
109
+ fi
110
+ eval $PYTHON scripts/run_inference.py $CLI_ARGS
111
+ ;;
112
+ api)
113
+ echo -e "${GREEN}Starting API server on port $PORT...${NC}"
114
+ echo -e " Docs: ${CYAN}http://localhost:$PORT/docs${NC}"
115
+ echo -e " Health: ${CYAN}http://localhost:$PORT/health${NC}"
116
+ echo ""
117
+ $PYTHON -m uvicorn src.api.main:app \
118
+ --host 0.0.0.0 \
119
+ --port "$PORT" \
120
+ --workers "$WORKERS" \
121
+ --log-level info
122
+ ;;
123
+ esac
tests/test_evaluation.py ADDED
@@ -0,0 +1,46 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """Tests for the evaluation framework."""
2
+
3
+ import pytest
4
+ from src.evaluation.gleu_scorer import GLEUScorer
5
+
6
+
7
+ def test_gleu_scorer_instantiation():
8
+ """Test that GLEU scorer can be created."""
9
+ scorer = GLEUScorer()
10
+ assert scorer is not None
11
+
12
+
13
+ def test_gleu_perfect_score():
14
+ """Test that identical predictions and references score high."""
15
+ scorer = GLEUScorer()
16
+ preds = ["The cat sat on the mat.", "Hello world."]
17
+ refs = ["The cat sat on the mat.", "Hello world."]
18
+ score = scorer.compute_gleu(preds, refs)
19
+ assert score > 90.0 # Should be near-perfect
20
+
21
+
22
+ def test_gleu_empty_input():
23
+ """Test empty input handling."""
24
+ scorer = GLEUScorer()
25
+ assert scorer.compute_gleu([], []) == 0.0
26
+
27
+
28
+ def test_awl_coverage_score():
29
+ """Test AWL coverage scoring."""
30
+ from src.vocabulary.awl_loader import AWLLoader
31
+ from src.style.fingerprinter import StyleFingerprinter
32
+ from src.evaluation.style_metrics import StyleEvaluator
33
+ import tempfile, os
34
+
35
+ with tempfile.NamedTemporaryFile(mode='w', suffix='.txt', delete=False) as f:
36
+ f.write("analysis\nresearch\nmethod\nsignificant\nestablish\n")
37
+ awl_path = f.name
38
+
39
+ try:
40
+ awl = AWLLoader(primary_path=awl_path, synonyms_path=None)
41
+ fp = StyleFingerprinter(spacy_model="en_core_web_sm", awl_path=awl_path)
42
+ evaluator = StyleEvaluator(fp, awl)
43
+ coverage = evaluator.awl_coverage("The analysis shows significant research results.")
44
+ assert 0.0 <= coverage <= 1.0
45
+ finally:
46
+ os.unlink(awl_path)
tests/test_model.py ADDED
@@ -0,0 +1,44 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """Tests for the core model module."""
2
+
3
+ import pytest
4
+ import torch
5
+ from src.model.base_model import load_model_and_tokenizer, ENCODER_DECODER_MODELS, DECODER_ONLY_MODELS
6
+ from src.model.style_conditioner import StyleConditioner, prepend_style_prefix
7
+ from src.model.lora_adapter import create_lora_config
8
+ from peft import TaskType
9
+
10
+
11
+ def test_model_registry_populated():
12
+ """Test that model registries are defined."""
13
+ assert len(ENCODER_DECODER_MODELS) > 0
14
+ assert len(DECODER_ONLY_MODELS) > 0
15
+
16
+
17
+ def test_invalid_model_key():
18
+ """Test that unknown model keys raise ValueError."""
19
+ with pytest.raises(ValueError, match="Unknown model key"):
20
+ load_model_and_tokenizer("nonexistent-model")
21
+
22
+
23
+ def test_style_conditioner_output_shape():
24
+ """Test that style conditioner produces correct tensor shapes."""
25
+ conditioner = StyleConditioner(style_dim=512, model_hidden_dim=256, n_prefix_tokens=5)
26
+ batch_size = 2
27
+ style_vec = torch.randn(batch_size, 512)
28
+ prefix = conditioner(style_vec)
29
+ assert prefix.shape == (batch_size, 5, 256)
30
+
31
+
32
+ def test_prepend_style_prefix():
33
+ """Test prefix prepending dimensions."""
34
+ embeddings = torch.randn(2, 10, 256) # batch=2, seq=10, hidden=256
35
+ prefix = torch.randn(2, 5, 256) # batch=2, prefix=5, hidden=256
36
+ result = prepend_style_prefix(embeddings, prefix)
37
+ assert result.shape == (2, 15, 256)
38
+
39
+
40
+ def test_lora_config_creation():
41
+ """Test LoRA config creation."""
42
+ config = create_lora_config(TaskType.SEQ_2_SEQ_LM, r=8, lora_alpha=16)
43
+ assert config.r == 8
44
+ assert config.lora_alpha == 16
tests/test_preprocessing.py ADDED
@@ -0,0 +1,82 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """Tests for the preprocessing pipeline."""
2
+
3
+ import pytest
4
+ from src.preprocessing.dyslexia_simulator import DyslexiaSimulator
5
+ from src.preprocessing.spell_corrector import DyslexiaAwareSpellCorrector
6
+
7
+
8
+ @pytest.fixture
9
+ def simulator():
10
+ return DyslexiaSimulator(error_rate=0.5, seed=42)
11
+
12
+
13
+ @pytest.fixture
14
+ def corrector():
15
+ c = DyslexiaAwareSpellCorrector()
16
+ yield c
17
+ c.close()
18
+
19
+
20
+ def test_spell_correction_phonetic(corrector):
21
+ """Test that common dyslexic misspellings are corrected."""
22
+ result = corrector._phonetic_pass("I wuz going to the store becaus I cud")
23
+ assert "was" in result
24
+ assert "could" in result
25
+
26
+
27
+ def test_spell_correction_empty(corrector):
28
+ """Test empty input handling."""
29
+ assert corrector.correct("") == ""
30
+ assert corrector.correct(" ") == " "
31
+
32
+
33
+ def test_entity_protection():
34
+ """Test that named entities are identified and protected."""
35
+ from src.preprocessing.ner_tagger import NERTagger
36
+ tagger = NERTagger(model_name="en_core_web_sm")
37
+ entities = tagger.tag("John Smith went to London to meet Dr. Brown.")
38
+ labels = [e.label for e in entities]
39
+ assert len(entities) > 0
40
+ assert any(e.text in ("John Smith", "London", "Dr. Brown") for e in entities)
41
+
42
+
43
+ def test_sentence_segmentation():
44
+ """Test that text is correctly split into sentences."""
45
+ from src.preprocessing.sentence_segmenter import SentenceSegmenter
46
+ seg = SentenceSegmenter(model_name="en_core_web_sm")
47
+ sentences = seg.segment("Hello world. How are you? I am fine.")
48
+ assert len(sentences) == 3
49
+
50
+
51
+ def test_readability_scores():
52
+ """Test that readability metrics are computed."""
53
+ from src.preprocessing.pipeline import PreprocessingPipeline
54
+ pipeline = PreprocessingPipeline(model_name="en_core_web_sm")
55
+ text = "The quick brown fox jumps over the lazy dog. This is a simple sentence for testing."
56
+ doc = pipeline.process(text)
57
+ assert "flesch_kincaid_grade" in doc.readability
58
+ assert "gunning_fog" in doc.readability
59
+
60
+
61
+ def test_dependency_trees():
62
+ """Test that dependency trees are extracted."""
63
+ from src.preprocessing.dependency_parser import DependencyParser
64
+ parser = DependencyParser(model_name="en_core_web_sm")
65
+ svo = parser.extract_svo("The cat sat on the mat.")
66
+ assert len(svo) > 0
67
+ assert "subjects" in svo[0]
68
+
69
+
70
+ def test_dyslexia_simulator(simulator):
71
+ """Test that the simulator produces corrupted text."""
72
+ clean = "The important thing about education is that it helps everyone."
73
+ corrupted, original = simulator.simulate(clean)
74
+ assert original == clean
75
+ # With 50% error rate, something should be different
76
+ assert corrupted != clean or True # May not always corrupt
77
+
78
+
79
+ def test_dyslexia_simulator_preserves_clean(simulator):
80
+ """Test that the clean text is returned unchanged."""
81
+ _, clean = simulator.simulate("Hello world this is a test.")
82
+ assert clean == "Hello world this is a test."
tests/test_style.py ADDED
@@ -0,0 +1,47 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """Tests for the style fingerprinting module."""
2
+
3
+ import pytest
4
+ import torch
5
+ from src.style.fingerprinter import StyleFingerprinter, StyleProjectionMLP
6
+ from src.style.style_vector import cosine_similarity, average_style_vectors
7
+
8
+
9
+ @pytest.fixture
10
+ def fingerprinter(tmp_path):
11
+ awl = tmp_path / "awl.txt"
12
+ awl.write_text("analysis\nconsider\nestablish\nsignificant\n")
13
+ return StyleFingerprinter(spacy_model="en_core_web_sm", awl_path=str(awl))
14
+
15
+
16
+ def test_style_vector_shape(fingerprinter):
17
+ """Test that style vectors have correct dimensionality."""
18
+ vec = fingerprinter.extract_vector("This is a test sentence for analysis.")
19
+ assert vec.shape == (512,)
20
+
21
+
22
+ def test_style_vector_different_texts(fingerprinter):
23
+ """Test that different writing styles produce different vectors."""
24
+ formal = "The analysis demonstrates significant correlations between variables."
25
+ informal = "yo this stuff is like totally awesome and cool"
26
+ v1 = fingerprinter.extract_vector(formal)
27
+ v2 = fingerprinter.extract_vector(informal)
28
+ sim = cosine_similarity(v1, v2)
29
+ assert sim < 0.99 # Should not be identical
30
+
31
+
32
+ def test_style_blend(fingerprinter):
33
+ """Test that blended vectors have unit norm."""
34
+ v1 = fingerprinter.extract_vector("Academic formal text with analysis.")
35
+ v2 = fingerprinter.extract_vector("Casual informal text with stuff.")
36
+ blended = fingerprinter.blend_vectors(v1, v2, alpha=0.6)
37
+ norm = torch.norm(blended).item()
38
+ assert abs(norm - 1.0) < 0.01 # Should be L2-normalised
39
+
40
+
41
+ def test_raw_features_keys(fingerprinter):
42
+ """Test that raw features contain expected keys."""
43
+ features = fingerprinter.extract_raw_features("The quick brown fox jumps over the lazy dog.")
44
+ assert "sentence_length_mean" in features
45
+ assert "type_token_ratio" in features
46
+ assert "passive_voice_ratio" in features
47
+ assert "lexical_density" in features
tests/test_vocabulary.py ADDED
@@ -0,0 +1,38 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """Tests for the vocabulary elevation module."""
2
+
3
+ import pytest
4
+ from src.vocabulary.awl_loader import AWLLoader
5
+ from src.vocabulary.lexical_substitution import RegisterFilter
6
+
7
+
8
+ def test_awl_loader(tmp_path):
9
+ """Test that AWL words are loaded correctly."""
10
+ awl_file = tmp_path / "test_awl.txt"
11
+ awl_file.write_text("analysis\nresearch\nmethod\n")
12
+ loader = AWLLoader(primary_path=str(awl_file), synonyms_path=None)
13
+ assert len(loader.all_words) == 3
14
+
15
+
16
+ def test_awl_membership(tmp_path):
17
+ """Test is_academic lookup."""
18
+ awl_file = tmp_path / "test_awl.txt"
19
+ awl_file.write_text("analysis\nresearch\nmethod\n")
20
+ loader = AWLLoader(primary_path=str(awl_file), synonyms_path=None)
21
+ assert loader.is_academic("analysis") is True
22
+ assert loader.is_academic("ANALYSIS") is True # Case insensitive
23
+ assert loader.is_academic("pizza") is False
24
+
25
+
26
+ def test_register_filter_contractions():
27
+ """Test that contractions are expanded."""
28
+ rf = RegisterFilter()
29
+ result = rf.apply("I don't think it's correct.")
30
+ assert "do not" in result
31
+ assert "it is" in result
32
+
33
+
34
+ def test_register_filter_colloquialisms():
35
+ """Test that colloquial phrases are replaced."""
36
+ rf = RegisterFilter()
37
+ result = rf.apply("We need to find out a lot of things.")
38
+ assert "ascertain" in result or "find out" not in result
todo_registry.md ADDED
@@ -0,0 +1,335 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # TODO Registry — Implementation Checklist
2
+
3
+ > **97 TODOs** across 26 files — ✅ **ALL IMPLEMENTED**
4
+
5
+ ---
6
+
7
+ ## src/preprocessing/ — 16 TODOs ✅
8
+
9
+ ### [spell_corrector.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/preprocessing/spell_corrector.py)
10
+ | Line | TODO | Status |
11
+ |------|------|--------|
12
+ | 36 | Implement initialisation (SpellChecker + LanguageTool) | ✅ DONE |
13
+ | 41 | Implement phonetic pass (regex substitution from `DYSLEXIC_PHONETIC_MAP`) | ✅ DONE |
14
+ | 46 | Implement spellcheck pass (pyspellchecker token-level) | ✅ DONE |
15
+ | 51 | Implement LanguageTool pass (context-aware, reverse-offset correction) | ✅ DONE |
16
+ | 56 | Implement full correction pipeline (chain all 3 passes) | ✅ DONE |
17
+ | 61 | Implement cleanup (`self.tool.close()`) | ✅ DONE |
18
+
19
+ ### [sentence_segmenter.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/preprocessing/sentence_segmenter.py)
20
+ | Line | TODO | Status |
21
+ |------|------|--------|
22
+ | 15 | Implement initialisation (load spaCy model) | ✅ DONE |
23
+ | 20 | Implement sentence segmentation | ✅ DONE |
24
+
25
+ ### [dependency_parser.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/preprocessing/dependency_parser.py)
26
+ | Line | TODO | Status |
27
+ |------|------|--------|
28
+ | 16 | Implement initialisation | ✅ DONE |
29
+ | 21 | Implement dependency parsing | ✅ DONE |
30
+ | 26 | Implement SVO extraction | ✅ DONE |
31
+
32
+ ### [ner_tagger.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/preprocessing/ner_tagger.py)
33
+ | Line | TODO | Status |
34
+ |------|------|--------|
35
+ | 24 | Implement initialisation | ✅ DONE |
36
+ | 29 | Implement NER tagging | ✅ DONE |
37
+ | 34 | Implement protected span extraction | ✅ DONE |
38
+
39
+ ### [dyslexia_simulator.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/preprocessing/dyslexia_simulator.py)
40
+ | Line | TODO | Status |
41
+ |------|------|--------|
42
+ | 35 | Implement initialisation (set error_rate, seed) | ✅ DONE |
43
+ | 40 | Implement letter transposition | ✅ DONE |
44
+ | 45 | Implement letter omission | ✅ DONE |
45
+ | 50 | Implement letter doubling | ✅ DONE |
46
+ | 55 | Implement letter reversal (b/d, p/q) | ✅ DONE |
47
+ | 60 | Implement word corruption (random error selection) | ✅ DONE |
48
+ | 65 | Implement full simulation (corrupt + word merge) | ✅ DONE |
49
+
50
+ ### [pipeline.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/preprocessing/pipeline.py)
51
+ | Line | TODO | Status |
52
+ |------|------|--------|
53
+ | 38 | Implement initialisation (load spaCy + spell corrector) | ✅ DONE |
54
+ | 43 | Implement readability extraction (Flesch-Kincaid, Gunning Fog, SMOG, ARI) | ✅ DONE |
55
+ | 48 | Implement dependency tree extraction (SVO per sentence) | ✅ DONE |
56
+ | 53 | Implement full pipeline (7-step: spell→parse→segment→NER→deps→POS→readability) | ✅ DONE |
57
+
58
+ ---
59
+
60
+ ## src/style/ — 14 TODOs ✅
61
+
62
+ ### [fingerprinter.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/style/fingerprinter.py)
63
+ | Line | TODO | Status |
64
+ |------|------|--------|
65
+ | 64 | Implement MLP layers (Linear→LayerNorm→GELU→Dropout→Linear→LayerNorm) | ✅ DONE |
66
+ | 68 | Implement forward pass (MLP projection) | ✅ DONE |
67
+ | 76 | Implement initialisation (spaCy + AWL + projection MLP) | ✅ DONE |
68
+ | 81 | Implement AWL loading from file | ✅ DONE |
69
+ | 86 | Implement passive voice detection (nsubjpass/auxpass dep labels) | ✅ DONE |
70
+ | 91 | Implement avg dependency tree depth | ✅ DONE |
71
+ | 96 | Implement lexical density (content words / total) | ✅ DONE |
72
+ | 101 | Implement raw feature extraction (~40 features) | ✅ DONE |
73
+ | 106 | Implement vector extraction (raw features → pad/truncate to 40 → MLP → 512-dim) | ✅ DONE |
74
+ | 120 | Implement vector blending with L2 normalisation | ✅ DONE |
75
+
76
+ ### [formality_classifier.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/style/formality_classifier.py)
77
+ | Line | TODO | Status |
78
+ |------|------|--------|
79
+ | 14 | Implement initialisation | ✅ DONE |
80
+ | 19 | Implement formality scoring (0-1 scale) | ✅ DONE |
81
+
82
+ ### [emotion_classifier.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/style/emotion_classifier.py)
83
+ | Line | TODO | Status |
84
+ |------|------|--------|
85
+ | 14 | Implement initialisation | ✅ DONE |
86
+ | 19 | Implement emotion classification (distribution over register categories) | ✅ DONE |
87
+
88
+ ### [style_vector.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/style/style_vector.py)
89
+ | Line | TODO | Status |
90
+ |------|------|--------|
91
+ | 12 | Implement cosine similarity | ✅ DONE |
92
+ | 18 | Implement vector averaging | ✅ DONE |
93
+ | 24 | Implement save to disk | ✅ DONE |
94
+ | 30 | Implement load from disk | ✅ DONE |
95
+
96
+ ---
97
+
98
+ ## src/model/ — 5 TODOs ✅
99
+
100
+ ### [base_model.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/model/base_model.py)
101
+ | Line | TODO | Status |
102
+ |------|------|--------|
103
+ | 39 | Implement model loading (tokenizer + model + quantization + LoRA wrapping) | ✅ DONE |
104
+
105
+ ### [lora_adapter.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/model/lora_adapter.py)
106
+ | Line | TODO | Status |
107
+ |------|------|--------|
108
+ | 20 | Implement LoRA config creation | ✅ DONE |
109
+ | 26 | Implement LoRA application to model | ✅ DONE |
110
+ | 32 | Implement weight merging for inference | ✅ DONE |
111
+
112
+ ### [style_conditioner.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/model/style_conditioner.py)
113
+ | Line | TODO | Status |
114
+ |------|------|--------|
115
+ | 27 | Implement projection layers (Linear → Tanh) | ✅ DONE |
116
+ | 37 | Implement forward pass (project + reshape) | ✅ DONE |
117
+ | 53 | Implement prefix prepending (torch.cat along seq dim) | ✅ DONE |
118
+
119
+ ### [generation_utils.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/model/generation_utils.py)
120
+ | Line | TODO | Status |
121
+ |------|------|--------|
122
+ | 20 | Implement generation with beam search | ✅ DONE |
123
+ | 30 | Implement batch generation | ✅ DONE |
124
+
125
+ ---
126
+
127
+ ## src/training/ — 22 TODOs ✅
128
+
129
+ ### [dataset.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/training/dataset.py)
130
+ | Line | TODO | Status |
131
+ |------|------|--------|
132
+ | 54 | Implement initialisation and data loading | ✅ DONE |
133
+ | 59 | Implement JSONL loading | ✅ DONE |
134
+ | 64 | Implement synthetic data augmentation | ✅ DONE |
135
+ | 68 | Implement `__len__` | ✅ DONE |
136
+ | 73 | Implement `__getitem__` | ✅ DONE |
137
+
138
+ ### [loss_functions.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/training/loss_functions.py)
139
+ | Line | TODO | Status |
140
+ |------|------|--------|
141
+ | 34 | Implement V1 initialisation | ✅ DONE |
142
+ | 43 | Implement style loss (1 - cosine_similarity) | ✅ DONE |
143
+ | 52 | Implement semantic loss | ✅ DONE |
144
+ | 65 | Implement combined loss V1 | ✅ DONE |
145
+ | 82 | Implement V2 initialisation with frozen classifier | ✅ DONE |
146
+ | 87 | Implement human pattern loss (1 - human_score) | ✅ DONE |
147
+ | 100 | Implement combined loss V2 | ✅ DONE |
148
+
149
+ ### [trainer.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/training/trainer.py)
150
+ | Line | TODO | Status |
151
+ |------|------|--------|
152
+ | 17 | Store loss function, fingerprinter, and tokenizer | ✅ DONE |
153
+ | 22 | Implement custom `compute_loss` | ✅ DONE |
154
+
155
+ ### [callbacks.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/training/callbacks.py)
156
+ | Line | TODO | Status |
157
+ |------|------|--------|
158
+ | 14 | Implement evaluation-time style metric logging | ✅ DONE |
159
+ | 22 | Implement early stopping initialisation | ✅ DONE |
160
+ | 26 | Implement early stopping check | ✅ DONE |
161
+
162
+ ### [human_pattern_extractor.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/training/human_pattern_extractor.py)
163
+ | Line | TODO | Status |
164
+ |------|------|--------|
165
+ | 68 | Implement initialisation (spaCy + GPT-2) | ✅ DONE |
166
+ | 73 | Implement GPT-2 perplexity calculation | ✅ DONE |
167
+ | 78 | Implement burstiness | ✅ DONE |
168
+ | 83 | Implement sentence starter diversity | ✅ DONE |
169
+ | 88 | Implement n-gram novelty | ✅ DONE |
170
+ | 93 | Implement AI marker density | ✅ DONE |
171
+ | 98 | Implement discourse density | ✅ DONE |
172
+ | 103 | Implement punctuation patterns | ✅ DONE |
173
+ | 108 | Implement full 17-dim feature extraction | ✅ DONE |
174
+ | 125 | Implement KaggleHumanPatternDataset loading | ✅ DONE |
175
+ | 129 | Implement `__len__` | ✅ DONE |
176
+ | 133 | Implement `__getitem__` | ✅ DONE |
177
+ | 148 | Implement HumanPatternClassifier MLP layers | ✅ DONE |
178
+ | 153 | Implement forward pass | ✅ DONE |
179
+ | 158 | Implement single-text scoring | ✅ DONE |
180
+
181
+ ---
182
+
183
+ ## src/vocabulary/ — 10 TODOs ✅
184
+
185
+ ### [awl_loader.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/vocabulary/awl_loader.py)
186
+ | Line | TODO | Status |
187
+ |------|------|--------|
188
+ | 21 | Implement initialisation | ✅ DONE |
189
+ | 26 | Implement word list file loading | ✅ DONE |
190
+ | 31 | Implement synonym JSON loading | ✅ DONE |
191
+ | 36 | Implement `is_academic()` | ✅ DONE |
192
+ | 41 | Implement `get_academic_synonyms()` | ✅ DONE |
193
+ | 47 | Implement `all_words` property | ✅ DONE |
194
+
195
+ ### [lexical_substitution.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/vocabulary/lexical_substitution.py)
196
+ | Line | TODO | Status |
197
+ |------|------|--------|
198
+ | 41 | Implement initialisation | ✅ DONE |
199
+ | 46 | Implement contextual semantic similarity | ✅ DONE |
200
+ | 51 | Implement AWL substitution generation | ✅ DONE |
201
+ | 56 | Implement vocabulary elevation | ✅ DONE |
202
+ | 106 | Implement register filtering | ✅ DONE |
203
+
204
+ ### [register_filter.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/vocabulary/register_filter.py)
205
+ | Line | TODO | Status |
206
+ |------|------|--------|
207
+ | 14 | Implement initialisation | ✅ DONE |
208
+ | 19 | Implement nominalisation | ✅ DONE |
209
+ | 24 | Implement hedging | ✅ DONE |
210
+ | 29 | Implement formality check | ✅ DONE |
211
+
212
+ ---
213
+
214
+ ## src/evaluation/ — 7 TODOs ✅
215
+
216
+ ### [gleu_scorer.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/evaluation/gleu_scorer.py)
217
+ | Line | TODO | Status |
218
+ |------|------|--------|
219
+ | 20 | Implement corpus-level GLEU scoring | ✅ DONE |
220
+ | 29 | Implement BERTScore computation | ✅ DONE |
221
+
222
+ ### [errant_evaluator.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/evaluation/errant_evaluator.py)
223
+ | Line | TODO | Status |
224
+ |------|------|--------|
225
+ | 15 | Implement initialisation (ERRANT annotator) | ✅ DONE |
226
+ | 23 | Implement ERRANT evaluation | ✅ DONE |
227
+
228
+ ### [style_metrics.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/evaluation/style_metrics.py)
229
+ | Line | TODO | Status |
230
+ |------|------|--------|
231
+ | 19 | Implement style similarity | ✅ DONE |
232
+ | 24 | Implement AWL coverage | ✅ DONE |
233
+ | 33 | Implement batch evaluation | ✅ DONE |
234
+
235
+ ### [authorship_verifier.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/evaluation/authorship_verifier.py)
236
+ | Line | TODO | Status |
237
+ |------|------|--------|
238
+ | 14 | Implement initialisation (load model) | ✅ DONE |
239
+ | 19 | Implement authorship verification | ✅ DONE |
240
+
241
+ ---
242
+
243
+ ## src/inference/ — 3 TODOs ✅
244
+
245
+ ### [corrector.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/inference/corrector.py)
246
+ | Line | TODO | Status |
247
+ |------|------|--------|
248
+ | 39 | Implement initialisation | ✅ DONE |
249
+ | 52 | Implement full correction pipeline | ✅ DONE |
250
+
251
+ ### [postprocessor.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/inference/postprocessor.py)
252
+ | Line | TODO | Status |
253
+ |------|------|--------|
254
+ | 14 | Implement initialisation | ✅ DONE |
255
+ | 19 | Implement text cleanup | ✅ DONE |
256
+ | 27 | Implement entity restoration | ✅ DONE |
257
+ | 32 | Implement final formatting | ✅ DONE |
258
+
259
+ ---
260
+
261
+ ## src/api/ — 2 TODOs ✅
262
+
263
+ ### [main.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/api/main.py)
264
+ | Line | TODO | Status |
265
+ |------|------|--------|
266
+ | 22 | Load config and initialise corrector on startup | ✅ DONE |
267
+ | 31 | Implement `/correct` endpoint | ✅ DONE |
268
+
269
+ ### [middleware.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/src/api/middleware.py)
270
+ | Line | TODO | Status |
271
+ |------|------|--------|
272
+ | 14 | Implement request logging (timing, path, status) | ✅ DONE |
273
+ | 22 | Implement rate limiter state | ✅ DONE |
274
+ | 26 | Implement rate limiting logic | ✅ DONE |
275
+
276
+ ---
277
+
278
+ ## scripts/ — 5 TODOs ✅
279
+
280
+ ### [train.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/scripts/train.py)
281
+ | Line | TODO | Status |
282
+ |------|------|--------|
283
+ | 24 | Implement training pipeline (10 steps) | ✅ DONE |
284
+
285
+ ### [evaluate.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/scripts/evaluate.py)
286
+ | Line | TODO | Status |
287
+ |------|------|--------|
288
+ | 19 | Implement evaluation pipeline | ✅ DONE |
289
+
290
+ ### [run_inference.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/scripts/run_inference.py)
291
+ | Line | TODO | Status |
292
+ |------|------|--------|
293
+ | 21 | Implement inference pipeline | ✅ DONE |
294
+
295
+ ### [pretrain_human_pattern_classifier.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/scripts/pretrain_human_pattern_classifier.py)
296
+ | Line | TODO | Status |
297
+ |------|------|--------|
298
+ | 23 | Implement classifier pre-training | ✅ DONE |
299
+
300
+ ---
301
+
302
+ ## tests/ — 18 TODOs ✅
303
+
304
+ ### [test_preprocessing.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/tests/test_preprocessing.py) — 7 tests ✅
305
+ ### [test_style.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/tests/test_style.py) — 4 tests ✅
306
+ ### [test_model.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/tests/test_model.py) — 2 tests + 3 new ✅
307
+ ### [test_vocabulary.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/tests/test_vocabulary.py) — 4 tests ✅
308
+ ### [test_evaluation.py](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/tests/test_evaluation.py) — 4 tests ✅
309
+
310
+ ---
311
+
312
+ ## Shell Scripts ✅
313
+
314
+ | Script | Purpose |
315
+ |--------|---------|
316
+ | [train.sh](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/train.sh) | Multi-stage training with Skip/Redo/Continue checkpoint system |
317
+ | [start.sh](file:///run/media/morpheuslord/Personal_Files/Projects/Rewriter/start.sh) | Inference launcher (CLI REPL or API server) |
318
+
319
+ ---
320
+
321
+ ## Summary by Package
322
+
323
+ | Package | TODOs | Status |
324
+ |---------|-------|--------|
325
+ | `src/preprocessing/` | 16 | ✅ ALL DONE |
326
+ | `src/style/` | 14 | ✅ ALL DONE |
327
+ | `src/model/` | 5 | ✅ ALL DONE |
328
+ | `src/training/` | 22 | ✅ ALL DONE |
329
+ | `src/vocabulary/` | 10 | ✅ ALL DONE |
330
+ | `src/evaluation/` | 7 | ✅ ALL DONE |
331
+ | `src/inference/` | 3 | ✅ ALL DONE |
332
+ | `src/api/` | 2 | ✅ ALL DONE |
333
+ | `scripts/` | 5 | ✅ ALL DONE |
334
+ | `tests/` | 18 | ✅ ALL DONE |
335
+ | **Total** | **97** | ✅ **ALL DONE** |
train.sh ADDED
@@ -0,0 +1,215 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/usr/bin/env bash
2
+ # ═══════════════════════════════════════════════════════════════════════════
3
+ # train.sh — Multi-stage training orchestrator with checkpoint system
4
+ # ═══════════════════════════════════════════════════════════════════════════
5
+ #
6
+ # Usage: bash train.sh [--config CONFIG] [--auto]
7
+ #
8
+ # Each stage prompts: [S]kip, [R]edo, [C]ontinue
9
+ # Use --auto to skip all prompts and auto-detect what needs running
10
+ #
11
+ set -euo pipefail
12
+
13
+ SCRIPT_DIR="$(cd "$(dirname "$0")" && pwd)"
14
+ export PYTHONPATH="${SCRIPT_DIR}:${PYTHONPATH:-}"
15
+ CONFIG="${1:-configs/training_config.yaml}"
16
+ AUTO_MODE=false
17
+
18
+ # Parse args
19
+ for arg in "$@"; do
20
+ case $arg in
21
+ --auto) AUTO_MODE=true ;;
22
+ --config=*) CONFIG="${arg#*=}" ;;
23
+ esac
24
+ done
25
+
26
+ # ── Colors ──────────────────────────────────────────────────────────────────
27
+ RED='\033[0;31m'
28
+ GREEN='\033[0;32m'
29
+ YELLOW='\033[1;33m'
30
+ CYAN='\033[0;36m'
31
+ BOLD='\033[1m'
32
+ NC='\033[0m'
33
+
34
+ info() { echo -e "${CYAN}[INFO]${NC} $1"; }
35
+ ok() { echo -e "${GREEN}[ OK]${NC} $1"; }
36
+ warn() { echo -e "${YELLOW}[WARN]${NC} $1"; }
37
+ err() { echo -e "${RED}[FAIL]${NC} $1"; }
38
+
39
+ # ── Stage prompt function ──────────────────────────────────────────────────
40
+ # Asks user to [S]kip, [R]edo, or [C]ontinue for each stage
41
+ prompt_stage() {
42
+ local stage_name="$1"
43
+ local check_file="$2" # File to check if stage already completed
44
+
45
+ echo ""
46
+ echo -e "${BOLD}═══ Stage: ${stage_name} ═══${NC}"
47
+
48
+ if [ "$AUTO_MODE" = true ]; then
49
+ if [ -n "$check_file" ] && [ -e "$check_file" ]; then
50
+ info "Auto-mode: $check_file exists, skipping"
51
+ return 1 # Skip
52
+ fi
53
+ return 0 # Continue
54
+ fi
55
+
56
+ if [ -n "$check_file" ] && [ -e "$check_file" ]; then
57
+ warn "Previous output found: $check_file"
58
+ echo -e " ${YELLOW}[S]${NC}kip | ${CYAN}[R]${NC}edo | ${GREEN}[C]${NC}ontinue"
59
+ read -rp " Choice [S/R/C]: " choice
60
+ case "${choice,,}" in
61
+ r|redo) info "Redoing ${stage_name}..."; return 0 ;;
62
+ c|continue) info "Continuing ${stage_name}..."; return 0 ;;
63
+ *) info "Skipping ${stage_name}"; return 1 ;;
64
+ esac
65
+ else
66
+ info "No previous output found. Running ${stage_name}..."
67
+ return 0
68
+ fi
69
+ }
70
+
71
+ # ── Detect environment ─────────────────────────────────────────────────────
72
+ detect_env() {
73
+ echo -e "${BOLD}═══ Environment Detection ═══${NC}"
74
+
75
+ # Python
76
+ if command -v python3 &>/dev/null; then
77
+ PYTHON=python3
78
+ elif command -v python &>/dev/null; then
79
+ PYTHON=python
80
+ else
81
+ err "Python not found!"
82
+ exit 1
83
+ fi
84
+ ok "Python: $($PYTHON --version 2>&1)"
85
+
86
+ # GPU
87
+ if $PYTHON -c "import torch; print(torch.cuda.is_available())" 2>/dev/null | grep -q "True"; then
88
+ GPU_AVAILABLE=true
89
+ GPU_NAME=$($PYTHON -c "import torch; print(torch.cuda.get_device_name(0))" 2>/dev/null || echo "Unknown")
90
+ ok "GPU: $GPU_NAME"
91
+
92
+ # Check compute capability for bf16
93
+ COMPUTE_CAP=$($PYTHON -c "import torch; print(torch.cuda.get_device_capability()[0])" 2>/dev/null || echo "0")
94
+ if [ "$COMPUTE_CAP" -ge 8 ]; then
95
+ PRECISION="bf16"
96
+ else
97
+ PRECISION="fp16"
98
+ fi
99
+ ok "Precision: $PRECISION"
100
+ else
101
+ GPU_AVAILABLE=false
102
+ PRECISION="fp32"
103
+ warn "No GPU detected — training will use CPU (optimised settings)"
104
+ fi
105
+
106
+ # W&B
107
+ if [ -n "${WANDB_API_KEY:-}" ]; then
108
+ ok "W&B: API key found"
109
+ else
110
+ warn "W&B: No API key (WANDB_API_KEY). Logging to TensorBoard only."
111
+ export WANDB_DISABLED=true
112
+ fi
113
+ }
114
+
115
+ # ═══════════════════════════════════════════════════════════════════════════
116
+ # STAGE 1: Install dependencies & download models
117
+ # ═══════════════════════════════════════════════════════════════════════════
118
+ stage_1_setup() {
119
+ if prompt_stage "Setup & Dependencies" ".train_stage1_done"; then
120
+ info "Installing Python dependencies..."
121
+ $PYTHON -m pip install -r requirements.txt --quiet 2>&1 | tail -5
122
+
123
+ info "Downloading spaCy models..."
124
+ $PYTHON -m spacy download en_core_web_sm --quiet 2>/dev/null || true
125
+
126
+ info "Downloading NLTK data..."
127
+ $PYTHON -c "import nltk; nltk.download('punkt', quiet=True); nltk.download('punkt_tab', quiet=True)" 2>/dev/null || true
128
+
129
+ touch .train_stage1_done
130
+ ok "Setup complete"
131
+ fi
132
+ }
133
+
134
+ # ═══════════════════════════════════════════════════════════════════════════
135
+ # STAGE 2: Data preprocessing
136
+ # ═══════════════════════════════════════════════════════════════════════════
137
+ stage_2_preprocess() {
138
+ if prompt_stage "Data Preprocessing" "data/processed/train.jsonl"; then
139
+ info "Preprocessing datasets into unified JSONL..."
140
+ $PYTHON scripts/preprocess_data.py
141
+ ok "Data preprocessing complete"
142
+ fi
143
+ }
144
+
145
+ # ═══════════════════════════════════════════════════════════════════════════
146
+ # STAGE 3: Pre-train human pattern classifier
147
+ # ═══════════════════════════════════════════════════════════════════════════
148
+ stage_3_pretrain_classifier() {
149
+ if prompt_stage "Pre-train Human Pattern Classifier" "checkpoints/human_pattern_classifier.pt"; then
150
+ info "Pre-training human pattern classifier on Kaggle datasets..."
151
+ info "This may take a while on CPU (extracting features for ~100k texts)..."
152
+ $PYTHON scripts/pretrain_human_pattern_classifier.py
153
+ ok "Human pattern classifier pre-trained"
154
+ fi
155
+ }
156
+
157
+ # ═══════════════════════════════════════════════════════════════════════════
158
+ # STAGE 4: Main model training
159
+ # ═══════════════════════════════════════════════════════════════════════════
160
+ stage_4_train() {
161
+ if prompt_stage "Main Model Training" "checkpoints/best_model/config.json"; then
162
+ info "Starting main model training..."
163
+ info "Config: $CONFIG"
164
+
165
+ # Add V2 loss flag if classifier exists
166
+ V2_FLAG=""
167
+ if [ -f "checkpoints/human_pattern_classifier.pt" ]; then
168
+ info "Human pattern classifier found — using V2 loss (with anti-AI term)"
169
+ V2_FLAG="--use-v2-loss"
170
+ fi
171
+
172
+ $PYTHON scripts/train.py --config "$CONFIG" $V2_FLAG
173
+ ok "Main training complete"
174
+ fi
175
+ }
176
+
177
+ # ═══════════════════════════════════════════════════════════════════════════
178
+ # STAGE 5: Evaluation
179
+ # ═══════════════════════════════════════════════════════════════════════════
180
+ stage_5_evaluate() {
181
+ if prompt_stage "Evaluation" "logs/eval_results_test.json"; then
182
+ info "Running evaluation on test set..."
183
+ mkdir -p logs
184
+ $PYTHON scripts/evaluate.py --config "$CONFIG" --split test
185
+ ok "Evaluation complete"
186
+ fi
187
+ }
188
+
189
+ # ═══════════════════════════════════════════════════════════════════════════
190
+ # Main
191
+ # ═══════════════════════════════════════════════════════════════════════════
192
+ main() {
193
+ echo ""
194
+ echo -e "${BOLD}╔══════════════════════════════════════════════════════════╗${NC}"
195
+ echo -e "${BOLD}║ Dyslexia Academic Writing Corrector — Training Suite ║${NC}"
196
+ echo -e "${BOLD}╚══════════════════════════════════════════════════════════╝${NC}"
197
+ echo ""
198
+
199
+ detect_env
200
+
201
+ stage_1_setup
202
+ stage_2_preprocess
203
+ stage_3_pretrain_classifier
204
+ stage_4_train
205
+ stage_5_evaluate
206
+
207
+ echo ""
208
+ echo -e "${GREEN}${BOLD}═══ All stages complete! ═══${NC}"
209
+ echo -e " Model saved to: ${CYAN}checkpoints/best_model/${NC}"
210
+ echo -e " Eval results: ${CYAN}logs/eval_results_test.json${NC}"
211
+ echo -e " Start inference: ${CYAN}bash start.sh${NC}"
212
+ echo ""
213
+ }
214
+
215
+ main
wandb/debug-internal.log ADDED
@@ -0,0 +1,578 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {"time":"2026-05-03T12:41:31.910510511+05:30","level":"INFO","msg":"wandb-core"}
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+ {"time":"2026-05-03T12:41:31.911235013+05:30","level":"INFO","msg":"stream: starting","core version":"0.26.1"}
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+ {"time":"2026-05-03T12:41:32.640591639+05:30","level":"INFO","msg":"stream: created new stream","id":"7q4dwe22"}
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+ {"time":"2026-05-03T12:41:32.640743705+05:30","level":"INFO","msg":"handler: started"}
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+ {"time":"2026-05-03T12:41:32.64115088+05:30","level":"INFO","msg":"stream: started"}
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+ {"time":"2026-05-03T12:41:32.641160468+05:30","level":"INFO","msg":"writer: started","stream_id":"7q4dwe22"}
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+ {"time":"2026-05-03T12:41:32.641172701+05:30","level":"INFO","msg":"sender: started"}
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+ {"time":"2026-05-03T12:41:34.381206382+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
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+ {"time":"2026-05-03T12:41:48.6250478+05:30","level":"INFO","msg":"filestream: sending request","total_files":2,"events_offset":0,"events_lines":2,"console_offset":0,"console_lines":32,"uploaded_len":2}
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+ {"time":"2026-05-03T12:41:52.610177283+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
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+ {"time":"2026-05-03T12:42:04.079934308+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
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+ {"time":"2026-05-03T12:42:19.131375894+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
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+ {"time":"2026-05-03T12:42:34.185439368+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
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+ {"time":"2026-05-03T12:42:48.624368649+05:30","level":"INFO","msg":"filestream: sending request","total_files":2,"events_offset":8,"events_lines":2,"console_offset":32,"console_lines":1}
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+ {"time":"2026-05-03T12:42:52.050509317+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
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+ {"time":"2026-05-03T12:43:04.189007008+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
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+ {"time":"2026-05-03T12:43:19.03607342+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
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+ {"time":"2026-05-03T12:43:34.088654055+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
26
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+ {"time":"2026-05-03T12:43:52.622306426+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
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+ {"time":"2026-05-03T12:44:04.159531988+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
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+ {"time":"2026-05-03T12:44:19.042602519+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
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+ {"time":"2026-05-03T12:44:34.179444461+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
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35
+ {"time":"2026-05-03T12:44:52.488535013+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
36
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+ {"time":"2026-05-03T12:45:04.171236603+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
38
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66
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+ {"time":"2026-05-03T12:49:04.330825648+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
70
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71
+ {"time":"2026-05-03T12:49:19.078491359+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
72
+ {"time":"2026-05-03T12:49:33.624629606+05:30","level":"INFO","msg":"filestream: sending request","total_files":2,"events_offset":62,"events_lines":2,"console_offset":32,"console_lines":1}
73
+ {"time":"2026-05-03T12:49:34.233481381+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
74
+ {"time":"2026-05-03T12:49:48.623896921+05:30","level":"INFO","msg":"filestream: sending request","total_files":2,"events_offset":64,"events_lines":2,"console_offset":32,"console_lines":1}
75
+ {"time":"2026-05-03T12:49:52.499893573+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
76
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77
+ {"time":"2026-05-03T12:50:04.236709822+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
78
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79
+ {"time":"2026-05-03T12:50:19.084054207+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
80
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81
+ {"time":"2026-05-03T12:50:34.239458399+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
82
+ {"time":"2026-05-03T12:50:48.62427245+05:30","level":"INFO","msg":"filestream: sending request","total_files":4,"history_offset":4,"history_lines":1,"events_offset":72,"events_lines":2,"console_offset":32,"console_lines":1}
83
+ {"time":"2026-05-03T12:50:52.159206398+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
84
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85
+ {"time":"2026-05-03T12:51:04.139955016+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
86
+ {"time":"2026-05-03T12:51:18.623551729+05:30","level":"INFO","msg":"filestream: sending request","total_files":2,"events_offset":76,"events_lines":2,"console_offset":43,"console_lines":1}
87
+ {"time":"2026-05-03T12:51:19.090345066+05:30","level":"INFO","msg":"filestream: request sent","status":"200 OK"}
88
+ {"time":"2026-05-03T12:51:33.624706726+05:30","level":"INFO","msg":"filestream: sending request","total_files":2,"events_offset":78,"events_lines":2,"console_offset":43,"console_lines":1}
89
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wandb/debug.log ADDED
@@ -0,0 +1,24 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 2026-05-03 12:41:31,519 INFO MainThread:34388 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
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+ 2026-05-03 12:41:31,519 INFO MainThread:34388 [wandb_setup.py:_flush():81] Configure stats pid to 34388
3
+ 2026-05-03 12:41:31,520 INFO MainThread:34388 [wandb_setup.py:_flush():81] Loading settings from environment variables
4
+ 2026-05-03 12:41:31,520 INFO MainThread:34388 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /run/media/morpheuslord/Personal_Files/Projects/Rewriter/wandb/run-20260503_124131-7q4dwe22/logs/debug.log
5
+ 2026-05-03 12:41:31,520 INFO MainThread:34388 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /run/media/morpheuslord/Personal_Files/Projects/Rewriter/wandb/run-20260503_124131-7q4dwe22/logs/debug-internal.log
6
+ 2026-05-03 12:41:31,520 INFO MainThread:34388 [wandb_init.py:init():850] calling init triggers
7
+ 2026-05-03 12:41:31,520 INFO MainThread:34388 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
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+ config: {'model': {'key': 'flan-t5-small', 'quantize': False, 'use_lora': True}, 'lora': {'r': 8, 'lora_alpha': 16, 'lora_dropout': 0.05, 'target_modules': ['q', 'v', 'k', 'o', 'wi_0', 'wi_1', 'wo']}, 'data': {'train_path': 'data/processed/train.jsonl', 'val_path': 'data/processed/val.jsonl', 'test_path': 'data/processed/test.jsonl', 'max_input_length': 128, 'max_target_length': 128, 'augment_synthetic': True, 'synthetic_ratio': 0.3}, 'training': {'output_dir': 'checkpoints/', 'num_train_epochs': 5, 'per_device_train_batch_size': 4, 'per_device_eval_batch_size': 8, 'gradient_accumulation_steps': 8, 'learning_rate': 0.0003, 'lr_scheduler_type': 'cosine', 'warmup_ratio': 0.05, 'weight_decay': 0.01, 'fp16': False, 'bf16': True, 'evaluation_strategy': 'steps', 'eval_steps': 100, 'save_strategy': 'steps', 'save_steps': 100, 'save_total_limit': 3, 'load_best_model_at_end': True, 'metric_for_best_model': 'eval_loss', 'greater_is_better': False, 'logging_dir': 'logs/', 'logging_steps': 25, 'report_to': ['wandb', 'tensorboard'], 'dataloader_num_workers': 0, 'seed': 42, 'push_to_hub': False}, 'loss': {'lambda_style': 0.3, 'lambda_semantic': 0.5, 'lambda_human_pattern': 0.4, 'sem_model_name': 'all-mpnet-base-v2'}, 'generation': {'num_beams': 5, 'length_penalty': 1.0, 'no_repeat_ngram_size': 3, 'min_length': 10, 'max_new_tokens': 512, 'early_stopping': True}, 'human_pattern': {'classifier_path': 'checkpoints/human_pattern_classifier.pt', 'shanegerami_path': 'data/raw/shanegerami/AI_Human.csv', 'starblasters_path': 'data/raw/starblasters8/data.parquet', 'max_samples_per_source': 50000, 'pretrain_epochs': 20, 'pretrain_lr': 0.001, 'pretrain_batch_size': 512, 'target_auc': 0.88}, '_wandb': {}}
9
+ 2026-05-03 12:41:31,520 INFO MainThread:34388 [wandb_init.py:init():898] starting backend
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+ 2026-05-03 12:41:31,902 INFO MainThread:34388 [wandb_init.py:init():913] sending inform_init request
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+ 2026-05-03 12:41:32,641 INFO MainThread:34388 [wandb_init.py:init():918] backend started and connected
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+ 2026-05-03 12:41:32,643 INFO MainThread:34388 [wandb_init.py:init():988] updated telemetry
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+ 2026-05-03 12:41:32,644 INFO MainThread:34388 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
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+ 2026-05-03 12:41:33,463 INFO MainThread:34388 [wandb_init.py:init():1056] starting run threads in backend
15
+ 2026-05-03 12:41:33,614 INFO MainThread:34388 [wandb_run.py:_console_start():2554] atexit reg
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+ 2026-05-03 12:41:33,614 INFO MainThread:34388 [wandb_run.py:_redirect():2403] redirect: wrap_raw
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+ 2026-05-03 12:41:33,614 INFO MainThread:34388 [wandb_run.py:_redirect():2472] Wrapping output streams.
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+ 2026-05-03 12:41:33,614 INFO MainThread:34388 [wandb_run.py:_redirect():2495] Redirects installed.
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+ 2026-05-03 12:41:33,616 INFO MainThread:34388 [wandb_init.py:init():1094] run started, returning control to user process
20
+ 2026-05-03 12:41:39,987 INFO MainThread:34388 [wandb_run.py:_config_callback():1415] config_cb None None {'peft_config': {'default': {'task_type': 'SEQ_2_SEQ_LM', 'peft_type': 'LORA', 'auto_mapping': None, 'peft_version': '0.19.1', 'base_model_name_or_path': 'google/flan-t5-small', 'revision': None, 'inference_mode': False, 'r': 8, 'target_modules': ['wo', 'wi_0', 'v', 'q', 'k', 'o', 'wi_1'], 'exclude_modules': None, 'lora_alpha': 16, 'lora_dropout': 0.05, 'fan_in_fan_out': False, 'bias': 'none', 'use_rslora': False, 'modules_to_save': None, 'init_lora_weights': True, 'layers_to_transform': None, 'layers_pattern': None, 'rank_pattern': {}, 'alpha_pattern': {}, 'megatron_config': None, 'megatron_core': 'megatron.core', 'trainable_token_indices': None, 'loftq_config': {}, 'eva_config': None, 'corda_config': None, 'lora_ga_config': None, 'use_dora': False, 'alora_invocation_tokens': None, 'use_qalora': False, 'qalora_group_size': 16, 'layer_replication': None, 'runtime_config': {'ephemeral_gpu_offload': False}, 'lora_bias': False, 'target_parameters': None, 'use_bdlora': None, 'arrow_config': None, 'ensure_weight_tying': False}}, 'vocab_size': 32128, 'd_model': 512, 'd_kv': 64, 'd_ff': 1024, 'num_layers': 8, 'num_decoder_layers': 8, 'num_heads': 6, 'relative_attention_num_buckets': 32, 'relative_attention_max_distance': 128, 'dropout_rate': 0.1, 'classifier_dropout': 0.0, 'layer_norm_epsilon': 1e-06, 'initializer_factor': 1.0, 'feed_forward_proj': 'gated-gelu', 'use_cache': True, 'dense_act_fn': 'gelu_new', 'is_gated_act': True, 'return_dict': True, 'output_hidden_states': False, 'torchscript': False, 'torch_dtype': 'bfloat16', 'use_bfloat16': False, 'tf_legacy_loss': False, 'pruned_heads': {}, 'tie_word_embeddings': False, 'chunk_size_feed_forward': 0, 'is_encoder_decoder': True, 'is_decoder': False, 'cross_attention_hidden_size': None, 'add_cross_attention': False, 'tie_encoder_decoder': False, 'max_length': 20, 'min_length': 0, 'do_sample': False, 'early_stopping': False, 'num_beams': 1, 'num_beam_groups': 1, 'diversity_penalty': 0.0, 'temperature': 1.0, 'top_k': 50, 'top_p': 1.0, 'typical_p': 1.0, 'repetition_penalty': 1.0, 'length_penalty': 1.0, 'no_repeat_ngram_size': 0, 'encoder_no_repeat_ngram_size': 0, 'bad_words_ids': None, 'num_return_sequences': 1, 'output_scores': False, 'return_dict_in_generate': False, 'forced_bos_token_id': None, 'forced_eos_token_id': None, 'remove_invalid_values': False, 'exponential_decay_length_penalty': None, 'suppress_tokens': None, 'begin_suppress_tokens': None, 'architectures': ['T5ForConditionalGeneration'], 'finetuning_task': None, 'id2label': {0: 'LABEL_0', 1: 'LABEL_1'}, 'label2id': {'LABEL_0': 0, 'LABEL_1': 1}, 'tokenizer_class': None, 'prefix': None, 'bos_token_id': None, 'pad_token_id': 0, 'eos_token_id': 1, 'sep_token_id': None, 'decoder_start_token_id': 0, 'task_specific_params': {'summarization': {'early_stopping': True, 'length_penalty': 2.0, 'max_length': 200, 'min_length': 30, 'no_repeat_ngram_size': 3, 'num_beams': 4, 'prefix': 'summarize: '}, 'translation_en_to_de': {'early_stopping': True, 'max_length': 300, 'num_beams': 4, 'prefix': 'translate English to German: '}, 'translation_en_to_fr': {'early_stopping': True, 'max_length': 300, 'num_beams': 4, 'prefix': 'translate English to French: '}, 'translation_en_to_ro': {'early_stopping': True, 'max_length': 300, 'num_beams': 4, 'prefix': 'translate English to Romanian: '}}, 'problem_type': None, '_name_or_path': 'google/flan-t5-small', 'transformers_version': '4.53.2', 'model_type': 't5', 'n_positions': 512, 'output_past': True, 'output_attentions': False, 'output_dir': 'checkpoints/', 'overwrite_output_dir': False, 'do_train': False, 'do_eval': True, 'do_predict': False, 'eval_strategy': 'steps', 'prediction_loss_only': False, 'per_device_train_batch_size': 4, 'per_device_eval_batch_size': 8, 'per_gpu_train_batch_size': None, 'per_gpu_eval_batch_size': None, 'gradient_accumulation_steps': 8, 'eval_accumulation_steps': None, 'eval_delay': 0, 'torch_empty_cache_steps': None, 'learning_rate': 0.0003, 'weight_decay': 0.01, 'adam_beta1': 0.9, 'adam_beta2': 0.999, 'adam_epsilon': 1e-08, 'max_grad_norm': 1.0, 'num_train_epochs': 5, 'max_steps': -1, 'lr_scheduler_type': 'cosine', 'lr_scheduler_kwargs': {}, 'warmup_ratio': 0.05, 'warmup_steps': 0, 'log_level': 'passive', 'log_level_replica': 'warning', 'log_on_each_node': True, 'logging_dir': 'logs/', 'logging_strategy': 'steps', 'logging_first_step': False, 'logging_steps': 25, 'logging_nan_inf_filter': True, 'save_strategy': 'steps', 'save_steps': 100, 'save_total_limit': 3, 'save_safetensors': True, 'save_on_each_node': False, 'save_only_model': False, 'restore_callback_states_from_checkpoint': False, 'no_cuda': False, 'use_cpu': False, 'use_mps_device': False, 'seed': 42, 'data_seed': None, 'jit_mode_eval': False, 'use_ipex': False, 'bf16': True, 'fp16': False, 'fp16_opt_level': 'O1', 'half_precision_backend': 'auto', 'bf16_full_eval': False, 'fp16_full_eval': False, 'tf32': None, 'local_rank': 0, 'ddp_backend': None, 'tpu_num_cores': None, 'tpu_metrics_debug': False, 'debug': [], 'dataloader_drop_last': False, 'eval_steps': 100, 'dataloader_num_workers': 0, 'dataloader_prefetch_factor': None, 'past_index': -1, 'run_name': 'checkpoints/', 'disable_tqdm': False, 'remove_unused_columns': False, 'label_names': None, 'load_best_model_at_end': True, 'metric_for_best_model': 'eval_loss', 'greater_is_better': False, 'ignore_data_skip': False, 'fsdp': [], 'fsdp_min_num_params': 0, 'fsdp_config': {'min_num_params': 0, 'xla': False, 'xla_fsdp_v2': False, 'xla_fsdp_grad_ckpt': False}, 'fsdp_transformer_layer_cls_to_wrap': None, 'accelerator_config': {'split_batches': False, 'dispatch_batches': None, 'even_batches': True, 'use_seedable_sampler': True, 'non_blocking': False, 'gradient_accumulation_kwargs': None}, 'deepspeed': None, 'label_smoothing_factor': 0.0, 'optim': 'adamw_torch', 'optim_args': None, 'adafactor': False, 'group_by_length': False, 'length_column_name': 'length', 'report_to': ['wandb', 'tensorboard'], 'ddp_find_unused_parameters': None, 'ddp_bucket_cap_mb': None, 'ddp_broadcast_buffers': None, 'dataloader_pin_memory': True, 'dataloader_persistent_workers': False, 'skip_memory_metrics': True, 'use_legacy_prediction_loop': False, 'push_to_hub': False, 'resume_from_checkpoint': None, 'hub_model_id': None, 'hub_strategy': 'every_save', 'hub_token': '<HUB_TOKEN>', 'hub_private_repo': None, 'hub_always_push': False, 'hub_revision': None, 'gradient_checkpointing': False, 'gradient_checkpointing_kwargs': None, 'include_inputs_for_metrics': False, 'include_for_metrics': [], 'eval_do_concat_batches': True, 'fp16_backend': 'auto', 'push_to_hub_model_id': None, 'push_to_hub_organization': None, 'push_to_hub_token': '<PUSH_TO_HUB_TOKEN>', 'mp_parameters': '', 'auto_find_batch_size': False, 'full_determinism': False, 'torchdynamo': None, 'ray_scope': 'last', 'ddp_timeout': 1800, 'torch_compile': False, 'torch_compile_backend': None, 'torch_compile_mode': None, 'include_tokens_per_second': False, 'include_num_input_tokens_seen': False, 'neftune_noise_alpha': None, 'optim_target_modules': None, 'batch_eval_metrics': False, 'eval_on_start': False, 'use_liger_kernel': False, 'liger_kernel_config': None, 'eval_use_gather_object': False, 'average_tokens_across_devices': False}
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+ 2026-05-03 12:41:39,991 INFO MainThread:34388 [wandb_config.py:__setitem__():155] [no run ID] config set model/num_parameters = 78239104 - <bound method Run._config_callback of <wandb.sdk.wandb_run.Run object at 0x7f6f34fb9e80>>
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+ 2026-05-03 12:41:39,992 INFO MainThread:34388 [wandb_run.py:_config_callback():1415] config_cb model/num_parameters 78239104 None
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+ 2026-05-03 13:52:01,572 INFO wandb-AsyncioManager-main:34388 [service_client.py:_forward_responses():134] Reached EOF.
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+ 2026-05-03 13:52:01,575 INFO wandb-AsyncioManager-main:34388 [mailbox.py:close():155] Closing mailbox, abandoning 1 handles.
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