monai
medical
katielink commited on
Commit
a878930
1 Parent(s): 967fa85

add dataset dir example

Browse files
Files changed (3) hide show
  1. README.md +6 -0
  2. configs/metadata.json +3 -2
  3. docs/README.md +6 -0
README.md CHANGED
@@ -108,6 +108,12 @@ For more details usage instructions, visit the [MONAI Bundle Configuration Page]
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  python -m monai.bundle run --config_file configs/train.json
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  ```
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  #### Override the `train` config to execute evaluation with the trained model:
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  ```
 
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  python -m monai.bundle run --config_file configs/train.json
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  ```
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+ Please note that if the default dataset path is not modified with the actual path in the bundle config files, you can also override it by using `--dataset_dir`:
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+
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+ ```
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+ python -m monai.bundle run --config_file configs/train.json --dataset_dir <actual dataset path>
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+ ```
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+
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  #### Override the `train` config to execute evaluation with the trained model:
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  ```
configs/metadata.json CHANGED
@@ -1,7 +1,8 @@
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  {
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  "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
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- "version": "0.5.6",
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  "changelog": {
 
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  "0.5.6": "add the ONNX-TensorRT way of model conversion",
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  "0.5.5": "update retrained validation results and training curve",
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  "0.5.4": "add non-deterministic note",
@@ -20,7 +21,7 @@
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  "0.1.1": "add reference for LIDC dataset",
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  "0.1.0": "complete the model package"
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  },
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- "monai_version": "1.2.0rc5",
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  "pytorch_version": "1.13.1",
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  "numpy_version": "1.22.2",
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  "optional_packages_version": {
 
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  {
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  "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
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+ "version": "0.5.7",
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  "changelog": {
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+ "0.5.7": "add dataset dir example",
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  "0.5.6": "add the ONNX-TensorRT way of model conversion",
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  "0.5.5": "update retrained validation results and training curve",
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  "0.5.4": "add non-deterministic note",
 
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  "0.1.1": "add reference for LIDC dataset",
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  "0.1.0": "complete the model package"
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  },
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+ "monai_version": "1.2.0rc6",
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  "pytorch_version": "1.13.1",
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  "numpy_version": "1.22.2",
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  "optional_packages_version": {
docs/README.md CHANGED
@@ -101,6 +101,12 @@ For more details usage instructions, visit the [MONAI Bundle Configuration Page]
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  python -m monai.bundle run --config_file configs/train.json
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  ```
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  #### Override the `train` config to execute evaluation with the trained model:
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  ```
 
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  python -m monai.bundle run --config_file configs/train.json
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  ```
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+ Please note that if the default dataset path is not modified with the actual path in the bundle config files, you can also override it by using `--dataset_dir`:
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+
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+ ```
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+ python -m monai.bundle run --config_file configs/train.json --dataset_dir <actual dataset path>
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+ ```
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+
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  #### Override the `train` config to execute evaluation with the trained model:
111
 
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  ```