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config.json ADDED
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+ {
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+ "_name_or_path": "bionlp/bluebert_pubmed_uncased_L-12_H-768_A-12",
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+ "adapters": {
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+ "adapters": {},
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+ "config_map": {},
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+ "fusion_config_map": {},
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+ "fusions": {}
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+ },
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+ "architectures": [
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+ "BertForTokenClassification"
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+ ],
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+ "attention_probs_dropout_prob": 0.1,
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+ "classifier_dropout": null,
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+ "hidden_act": "gelu",
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+ "id2label": {
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+ "0": "B-bio",
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+ "1": "I-bio",
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+ "2": "O"
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+ "model_type": "bert",
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+ "num_attention_heads": 12,
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+ "num_hidden_layers": 12,
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+ "position_embedding_type": "absolute",
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+ "torch_dtype": "float32",
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+ "vocab_size": 30522
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+ }
eval_results.txt ADDED
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+ eval_loss = 9.028804197441787e-05
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+ eval_precision = 0.998730964467005
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+ eval_recall = 1.0
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+ eval_f1 = 0.9993650793650793
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+ eval_runtime = 15.0632
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+ eval_samples_per_second = 61.275
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+ eval_steps_per_second = 7.701
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+ epoch = 13.0
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special_tokens_map.json ADDED
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+ {"unk_token": "[UNK]", "sep_token": "[SEP]", "pad_token": "[PAD]", "cls_token": "[CLS]", "mask_token": "[MASK]"}
test_predictions.txt ADDED
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test_results.txt ADDED
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+ test_loss = 0.09577381610870361
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+ test_precision = 0.8617558022199798
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+ test_recall = 0.8895833333333333
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+ test_f1 = 0.8754484879548948
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+ test_runtime = 15.3041
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+ test_samples_per_second = 61.552
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+ test_steps_per_second = 7.71
tokenizer_config.json ADDED
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training_args.bin ADDED
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vocab.txt ADDED
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