| # path to pretrained model and tokenizer | |
| model_name_or_path: microsoft/BiomedNLP-KRISSBERT-PubMed-UMLS-EL | |
| test_data: | |
| _target_: utils.MedMentionsDataset | |
| dataset_path: MedMentions/full/data/ | |
| split: test | |
| # paths to encoded data | |
| encoded_files: [ | |
| prototypes/embeddings | |
| ] | |
| encoded_umls_files: [] | |
| entity_list_ids: | |
| entity_list_names: prototypes/name_cuis | |
| index_path: | |
| seed: 12345 | |
| batch_size: 256 | |
| max_length: 64 | |
| num_retrievals: 100 | |
| top_ks: [1, 5, 50, 100] | |