|
{ |
|
"_name_or_path": "microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext", |
|
"architectures": [ |
|
"BertForTokenClassification" |
|
], |
|
"attention_probs_dropout_prob": 0.1, |
|
"classifier_dropout": null, |
|
"hidden_act": "gelu", |
|
"hidden_dropout_prob": 0.1, |
|
"hidden_size": 768, |
|
"id2label": { |
|
"0": "O", |
|
"1": "B-chemical", |
|
"2": "B-species", |
|
"3": "B-gene", |
|
"4": "I-gene", |
|
"5": "B-taxonomy_domain", |
|
"6": "I-chemical", |
|
"7": "B-protein_type", |
|
"8": "B-experimental_method", |
|
"9": "I-experimental_method", |
|
"10": "I-protein_type", |
|
"11": "I-species", |
|
"12": "B-evidence", |
|
"13": "I-evidence", |
|
"14": "B-protein", |
|
"15": "I-protein", |
|
"16": "B-protein_state", |
|
"17": "B-site", |
|
"18": "I-site", |
|
"19": "B-structure_element", |
|
"20": "I-structure_element", |
|
"21": "B-complex_assembly", |
|
"22": "I-protein_state", |
|
"23": "B-mutant", |
|
"24": "I-mutant", |
|
"25": "B-oligomeric_state", |
|
"26": "I-complex_assembly", |
|
"27": "B-residue_range", |
|
"28": "I-residue_range", |
|
"29": "B-residue_name_number", |
|
"30": "B-residue_name", |
|
"31": "I-taxonomy_domain", |
|
"32": "I-oligomeric_state", |
|
"33": "B-ptm", |
|
"34": "I-ptm", |
|
"35": "B-residue_number", |
|
"36": "I-residue_name_number", |
|
"37": "I-residue_number" |
|
}, |
|
"initializer_range": 0.02, |
|
"intermediate_size": 3072, |
|
"label2id": { |
|
"B-chemical": 1, |
|
"B-complex_assembly": 21, |
|
"B-evidence": 12, |
|
"B-experimental_method": 8, |
|
"B-gene": 3, |
|
"B-mutant": 23, |
|
"B-oligomeric_state": 25, |
|
"B-protein": 14, |
|
"B-protein_state": 16, |
|
"B-protein_type": 7, |
|
"B-ptm": 33, |
|
"B-residue_name": 30, |
|
"B-residue_name_number": 29, |
|
"B-residue_number": 35, |
|
"B-residue_range": 27, |
|
"B-site": 17, |
|
"B-species": 2, |
|
"B-structure_element": 19, |
|
"B-taxonomy_domain": 5, |
|
"I-chemical": 6, |
|
"I-complex_assembly": 26, |
|
"I-evidence": 13, |
|
"I-experimental_method": 9, |
|
"I-gene": 4, |
|
"I-mutant": 24, |
|
"I-oligomeric_state": 32, |
|
"I-protein": 15, |
|
"I-protein_state": 22, |
|
"I-protein_type": 10, |
|
"I-ptm": 34, |
|
"I-residue_name_number": 36, |
|
"I-residue_number": 37, |
|
"I-residue_range": 28, |
|
"I-site": 18, |
|
"I-species": 11, |
|
"I-structure_element": 20, |
|
"I-taxonomy_domain": 31, |
|
"O": 0 |
|
}, |
|
"layer_norm_eps": 1e-12, |
|
"max_position_embeddings": 512, |
|
"model_type": "bert", |
|
"num_attention_heads": 12, |
|
"num_hidden_layers": 12, |
|
"pad_token_id": 0, |
|
"position_embedding_type": "absolute", |
|
"torch_dtype": "float32", |
|
"transformers_version": "4.28.0", |
|
"type_vocab_size": 2, |
|
"use_cache": true, |
|
"vocab_size": 30522 |
|
} |
|
|