xls-r-300m-sv-robust / kenlm /util /read_compressed.cc
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#include "read_compressed.hh"
#include "file.hh"
#include "have.hh"
#include "scoped.hh"
#include <algorithm>
#include <iostream>
#include <cassert>
#include <climits>
#include <cstdlib>
#include <cstring>
#ifdef HAVE_ZLIB
#include <zlib.h>
#endif
#ifdef HAVE_BZLIB
#include <bzlib.h>
#endif
#ifdef HAVE_XZLIB
#include <lzma.h>
#endif
namespace util {
CompressedException::CompressedException() throw() {}
CompressedException::~CompressedException() throw() {}
GZException::GZException() throw() {}
GZException::~GZException() throw() {}
BZException::BZException() throw() {}
BZException::~BZException() throw() {}
XZException::XZException() throw() {}
XZException::~XZException() throw() {}
void ReadBase::ReplaceThis(ReadBase *with, ReadCompressed &thunk) {
thunk.internal_.reset(with);
}
ReadBase *ReadBase::Current(ReadCompressed &thunk) { return thunk.internal_.get(); }
uint64_t &ReadBase::ReadCount(ReadCompressed &thunk) {
return thunk.raw_amount_;
}
namespace {
ReadBase *ReadFactory(int fd, uint64_t &raw_amount, const void *already_data, std::size_t already_size, bool require_compressed);
// Completed file that other classes can thunk to.
class Complete : public ReadBase {
public:
std::size_t Read(void *, std::size_t, ReadCompressed &) {
return 0;
}
};
class Uncompressed : public ReadBase {
public:
explicit Uncompressed(int fd) : fd_(fd) {}
std::size_t Read(void *to, std::size_t amount, ReadCompressed &thunk) {
std::size_t got = PartialRead(fd_.get(), to, amount);
ReadCount(thunk) += got;
return got;
}
private:
scoped_fd fd_;
};
class UncompressedWithHeader : public ReadBase {
public:
UncompressedWithHeader(int fd, const void *already_data, std::size_t already_size) : fd_(fd) {
assert(already_size);
buf_.reset(malloc(already_size));
if (!buf_.get()) throw std::bad_alloc();
memcpy(buf_.get(), already_data, already_size);
remain_ = static_cast<uint8_t*>(buf_.get());
end_ = remain_ + already_size;
}
std::size_t Read(void *to, std::size_t amount, ReadCompressed &thunk) {
assert(buf_.get());
assert(remain_ != end_);
std::size_t sending = std::min<std::size_t>(amount, end_ - remain_);
memcpy(to, remain_, sending);
remain_ += sending;
if (remain_ == end_) {
ReplaceThis(new Uncompressed(fd_.release()), thunk);
}
return sending;
}
private:
scoped_malloc buf_;
uint8_t *remain_;
uint8_t *end_;
scoped_fd fd_;
};
static const std::size_t kInputBuffer = 16384;
template <class Compression> class StreamCompressed : public ReadBase {
public:
StreamCompressed(int fd, const void *already_data, std::size_t already_size)
: file_(fd),
in_buffer_(MallocOrThrow(kInputBuffer)),
back_(memcpy(in_buffer_.get(), already_data, already_size), already_size) {}
std::size_t Read(void *to, std::size_t amount, ReadCompressed &thunk) {
if (amount == 0) return 0;
back_.SetOutput(to, amount);
do {
if (!back_.Stream().avail_in) ReadInput(thunk);
if (!back_.Process()) {
// reached end, at least for the compressed portion.
std::size_t ret = static_cast<const uint8_t *>(static_cast<void*>(back_.Stream().next_out)) - static_cast<const uint8_t*>(to);
ReplaceThis(ReadFactory(file_.release(), ReadCount(thunk), back_.Stream().next_in, back_.Stream().avail_in, true), thunk);
if (ret) return ret;
// We did not read anything this round, so clients might think EOF. Transfer responsibility to the next reader.
return Current(thunk)->Read(to, amount, thunk);
}
} while (back_.Stream().next_out == to);
return static_cast<const uint8_t*>(static_cast<void*>(back_.Stream().next_out)) - static_cast<const uint8_t*>(to);
}
private:
void ReadInput(ReadCompressed &thunk) {
assert(!back_.Stream().avail_in);
std::size_t got = ReadOrEOF(file_.get(), in_buffer_.get(), kInputBuffer);
back_.SetInput(in_buffer_.get(), got);
ReadCount(thunk) += got;
}
scoped_fd file_;
scoped_malloc in_buffer_;
Compression back_;
};
#ifdef HAVE_ZLIB
class GZip {
public:
GZip(const void *base, std::size_t amount) {
SetInput(base, amount);
stream_.zalloc = Z_NULL;
stream_.zfree = Z_NULL;
stream_.opaque = Z_NULL;
stream_.msg = NULL;
// 32 for zlib and gzip decoding with automatic header detection.
// 15 for maximum window size.
UTIL_THROW_IF(Z_OK != inflateInit2(&stream_, 32 + 15), GZException, "Failed to initialize zlib.");
}
~GZip() {
if (Z_OK != inflateEnd(&stream_)) {
std::cerr << "zlib could not close properly." << std::endl;
abort();
}
}
void SetOutput(void *to, std::size_t amount) {
stream_.next_out = static_cast<Bytef*>(to);
stream_.avail_out = std::min<std::size_t>(std::numeric_limits<uInt>::max(), amount);
}
void SetInput(const void *base, std::size_t amount) {
assert(amount < static_cast<std::size_t>(std::numeric_limits<uInt>::max()));
stream_.next_in = const_cast<Bytef*>(static_cast<const Bytef*>(base));
stream_.avail_in = amount;
}
const z_stream &Stream() const { return stream_; }
bool Process() {
int result = inflate(&stream_, 0);
switch (result) {
case Z_OK:
return true;
case Z_STREAM_END:
return false;
case Z_ERRNO:
UTIL_THROW(ErrnoException, "zlib error");
default:
UTIL_THROW(GZException, "zlib encountered " << (stream_.msg ? stream_.msg : "an error ") << " code " << result);
}
}
private:
z_stream stream_;
};
#endif // HAVE_ZLIB
#ifdef HAVE_BZLIB
class BZip {
public:
BZip(const void *base, std::size_t amount) {
memset(&stream_, 0, sizeof(stream_));
SetInput(base, amount);
HandleError(BZ2_bzDecompressInit(&stream_, 0, 0));
}
~BZip() {
try {
HandleError(BZ2_bzDecompressEnd(&stream_));
} catch (const std::exception &e) {
std::cerr << e.what() << std::endl;
abort();
}
}
bool Process() {
int ret = BZ2_bzDecompress(&stream_);
if (ret == BZ_STREAM_END) return false;
HandleError(ret);
return true;
}
void SetOutput(void *base, std::size_t amount) {
stream_.next_out = static_cast<char*>(base);
stream_.avail_out = std::min<std::size_t>(std::numeric_limits<unsigned int>::max(), amount);
}
void SetInput(const void *base, std::size_t amount) {
stream_.next_in = const_cast<char*>(static_cast<const char*>(base));
stream_.avail_in = amount;
}
const bz_stream &Stream() const { return stream_; }
private:
void HandleError(int value) {
switch(value) {
case BZ_OK:
return;
case BZ_CONFIG_ERROR:
UTIL_THROW(BZException, "bzip2 seems to be miscompiled.");
case BZ_PARAM_ERROR:
UTIL_THROW(BZException, "bzip2 Parameter error");
case BZ_DATA_ERROR:
UTIL_THROW(BZException, "bzip2 detected a corrupt file");
case BZ_DATA_ERROR_MAGIC:
UTIL_THROW(BZException, "bzip2 detected bad magic bytes. Perhaps this was not a bzip2 file after all?");
case BZ_MEM_ERROR:
throw std::bad_alloc();
default:
UTIL_THROW(BZException, "Unknown bzip2 error code " << value);
}
}
bz_stream stream_;
};
#endif // HAVE_BZLIB
#ifdef HAVE_XZLIB
class XZip {
public:
XZip(const void *base, std::size_t amount)
: stream_(), action_(LZMA_RUN) {
memset(&stream_, 0, sizeof(stream_));
SetInput(base, amount);
HandleError(lzma_stream_decoder(&stream_, UINT64_MAX, 0));
}
~XZip() {
lzma_end(&stream_);
}
void SetOutput(void *base, std::size_t amount) {
stream_.next_out = static_cast<uint8_t*>(base);
stream_.avail_out = amount;
}
void SetInput(const void *base, std::size_t amount) {
stream_.next_in = static_cast<const uint8_t*>(base);
stream_.avail_in = amount;
if (!amount) action_ = LZMA_FINISH;
}
const lzma_stream &Stream() const { return stream_; }
bool Process() {
lzma_ret status = lzma_code(&stream_, action_);
if (status == LZMA_STREAM_END) return false;
HandleError(status);
return true;
}
private:
void HandleError(lzma_ret value) {
switch (value) {
case LZMA_OK:
return;
case LZMA_MEM_ERROR:
throw std::bad_alloc();
case LZMA_FORMAT_ERROR:
UTIL_THROW(XZException, "xzlib says file format not recognized");
case LZMA_OPTIONS_ERROR:
UTIL_THROW(XZException, "xzlib says unsupported compression options");
case LZMA_DATA_ERROR:
UTIL_THROW(XZException, "xzlib says this file is corrupt");
case LZMA_BUF_ERROR:
UTIL_THROW(XZException, "xzlib says unexpected end of input");
default:
UTIL_THROW(XZException, "unrecognized xzlib error " << value);
}
}
lzma_stream stream_;
lzma_action action_;
};
#endif // HAVE_XZLIB
class IStreamReader : public ReadBase {
public:
explicit IStreamReader(std::istream &stream) : stream_(stream) {}
std::size_t Read(void *to, std::size_t amount, ReadCompressed &thunk) {
if (!stream_.read(static_cast<char*>(to), amount)) {
UTIL_THROW_IF(!stream_.eof(), ErrnoException, "istream error");
amount = stream_.gcount();
}
ReadCount(thunk) += amount;
return amount;
}
private:
std::istream &stream_;
};
enum MagicResult {
UTIL_UNKNOWN, UTIL_GZIP, UTIL_BZIP, UTIL_XZIP
};
MagicResult DetectMagic(const void *from_void, std::size_t length) {
const uint8_t *header = static_cast<const uint8_t*>(from_void);
if (length >= 2 && header[0] == 0x1f && header[1] == 0x8b) {
return UTIL_GZIP;
}
const uint8_t kBZMagic[3] = {'B', 'Z', 'h'};
if (length >= sizeof(kBZMagic) && !memcmp(header, kBZMagic, sizeof(kBZMagic))) {
return UTIL_BZIP;
}
const uint8_t kXZMagic[6] = { 0xFD, '7', 'z', 'X', 'Z', 0x00 };
if (length >= sizeof(kXZMagic) && !memcmp(header, kXZMagic, sizeof(kXZMagic))) {
return UTIL_XZIP;
}
return UTIL_UNKNOWN;
}
ReadBase *ReadFactory(int fd, uint64_t &raw_amount, const void *already_data, const std::size_t already_size, bool require_compressed) {
scoped_fd hold(fd);
std::string header(reinterpret_cast<const char*>(already_data), already_size);
if (header.size() < ReadCompressed::kMagicSize) {
std::size_t original = header.size();
header.resize(ReadCompressed::kMagicSize);
std::size_t got = ReadOrEOF(fd, &header[original], ReadCompressed::kMagicSize - original);
raw_amount += got;
header.resize(original + got);
}
if (header.empty()) {
return new Complete();
}
switch (DetectMagic(&header[0], header.size())) {
case UTIL_GZIP:
#ifdef HAVE_ZLIB
return new StreamCompressed<GZip>(hold.release(), header.data(), header.size());
#else
UTIL_THROW(CompressedException, "This looks like a gzip file but gzip support was not compiled in.");
#endif
case UTIL_BZIP:
#ifdef HAVE_BZLIB
return new StreamCompressed<BZip>(hold.release(), &header[0], header.size());
#else
UTIL_THROW(CompressedException, "This looks like a bzip file (it begins with BZh), but bzip support was not compiled in.");
#endif
case UTIL_XZIP:
#ifdef HAVE_XZLIB
return new StreamCompressed<XZip>(hold.release(), header.data(), header.size());
#else
UTIL_THROW(CompressedException, "This looks like an xz file, but xz support was not compiled in.");
#endif
default:
UTIL_THROW_IF(require_compressed, CompressedException, "Uncompressed data detected after a compresssed file. This could be supported but usually indicates an error.");
return new UncompressedWithHeader(hold.release(), header.data(), header.size());
}
}
} // namespace
bool ReadCompressed::DetectCompressedMagic(const void *from_void) {
return DetectMagic(from_void, kMagicSize) != UTIL_UNKNOWN;
}
ReadCompressed::ReadCompressed(int fd) {
Reset(fd);
}
ReadCompressed::ReadCompressed(std::istream &in) {
Reset(in);
}
ReadCompressed::ReadCompressed() {}
void ReadCompressed::Reset(int fd) {
raw_amount_ = 0;
internal_.reset();
internal_.reset(ReadFactory(fd, raw_amount_, NULL, 0, false));
}
void ReadCompressed::Reset(std::istream &in) {
internal_.reset();
internal_.reset(new IStreamReader(in));
}
std::size_t ReadCompressed::Read(void *to, std::size_t amount) {
return internal_->Read(to, amount, *this);
}
std::size_t ReadCompressed::ReadOrEOF(void *const to_in, std::size_t amount) {
uint8_t *to = reinterpret_cast<uint8_t*>(to_in);
while (amount) {
std::size_t got = Read(to, amount);
if (!got) break;
to += got;
amount -= got;
}
return to - reinterpret_cast<uint8_t*>(to_in);
}
} // namespace util