Commit 
							
							·
						
						6f25e68
	
1
								Parent(s):
							
							1bcae24
								
Training in progress, epoch 1
Browse files- .gitignore +1 -0
- config.json +32 -0
- pytorch_model.bin +3 -0
- runs/Mar29_00-12-27_e26337db6d89/1680048762.598535/events.out.tfevents.1680048762.e26337db6d89.239.1 +3 -0
- runs/Mar29_00-12-27_e26337db6d89/events.out.tfevents.1680048762.e26337db6d89.239.0 +3 -0
- special_tokens_map.json +7 -0
- tokenizer.json +180 -0
- tokenizer_config.json +16 -0
- training_args.bin +3 -0
- vocab.txt +30 -0
    	
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        config.json
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        tokenizer.json
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        tokenizer_config.json
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        vocab.txt
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         | 
| 22 | 
            +
            M
         | 
| 23 | 
            +
            H
         | 
| 24 | 
            +
            C
         | 
| 25 | 
            +
            W
         | 
| 26 | 
            +
            X
         | 
| 27 | 
            +
            U
         | 
| 28 | 
            +
            B
         | 
| 29 | 
            +
            Z
         | 
| 30 | 
            +
            O
         |