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- cross_cell_type_generization/L1/Neutrophils/.DS_Store +0 -0
- cross_cell_type_generization/L1/Neutrophils/fold2/all_results.json +8 -0
- cross_cell_type_generization/L1/Neutrophils/fold2/config.json +25 -0
- cross_cell_type_generization/L1/Neutrophils/fold2/eval_results.json +8 -0
- cross_cell_type_generization/L6/Endotheliums/fold0/.DS_Store +0 -0
- cross_cell_type_generization/L6/Endotheliums/fold0/all_results.json +8 -0
- cross_cell_type_generization/L6/Endotheliums/fold0/checkpoint-1683/config.json +25 -0
- cross_cell_type_generization/L6/Endotheliums/fold0/checkpoint-1683/trainer_state.json +508 -0
- cross_cell_type_generization/L6/Endotheliums/fold0/config.json +25 -0
- cross_cell_type_generization/L6/Endotheliums/fold0/eval_results.json +8 -0
- cross_cell_type_generization/L6/Endotheliums/fold1/.DS_Store +0 -0
- cross_cell_type_generization/L6/Endotheliums/fold1/all_results.json +8 -0
- cross_cell_type_generization/L6/Endotheliums/fold1/checkpoint-1870/config.json +25 -0
- cross_cell_type_generization/L6/Endotheliums/fold1/checkpoint-1870/trainer_state.json +560 -0
- cross_cell_type_generization/L6/Endotheliums/fold1/config.json +25 -0
- cross_cell_type_generization/L6/Endotheliums/fold1/eval_results.json +8 -0
- cross_cell_type_generization/L6/Endotheliums/fold3/all_results.json +8 -0
- cross_cell_type_generization/L6/Endotheliums/fold3/checkpoint-1683/config.json +25 -0
- cross_cell_type_generization/L6/Endotheliums/fold3/checkpoint-1683/trainer_state.json +508 -0
- cross_cell_type_generization/L6/Endotheliums/fold3/config.json +25 -0
- cross_cell_type_generization/L6/Endotheliums/fold3/eval_results.json +8 -0
- cross_cell_type_generization/L6/Fibroblasts/.DS_Store +0 -0
- cross_cell_type_generization/L6/Fibroblasts/fold1/.DS_Store +0 -0
- cross_cell_type_generization/L6/Fibroblasts/fold1/all_results.json +8 -0
- cross_cell_type_generization/L6/Fibroblasts/fold1/config.json +25 -0
- cross_cell_type_generization/L6/Fibroblasts/fold1/eval_results.json +8 -0
- cross_cell_type_generization/L6/Fibroblasts/fold2/.DS_Store +0 -0
- cross_cell_type_generization/L6/Fibroblasts/fold2/all_results.json +8 -0
- cross_cell_type_generization/L6/Fibroblasts/fold2/checkpoint-1496/config.json +25 -0
- cross_cell_type_generization/L6/Fibroblasts/fold2/checkpoint-1496/trainer_state.json +450 -0
- cross_cell_type_generization/L6/Fibroblasts/fold2/config.json +25 -0
- cross_cell_type_generization/L6/Fibroblasts/fold2/eval_results.json +8 -0
- cross_cell_type_generization/L6/Fibroblasts/fold3/.DS_Store +0 -0
- cross_cell_type_generization/L6/Fibroblasts/fold3/all_results.json +8 -0
- cross_cell_type_generization/L6/Fibroblasts/fold3/checkpoint-1683/config.json +25 -0
- cross_cell_type_generization/L6/Fibroblasts/fold3/checkpoint-1683/trainer_state.json +508 -0
- cross_cell_type_generization/L6/Fibroblasts/fold3/config.json +25 -0
- cross_cell_type_generization/L6/Fibroblasts/fold3/eval_results.json +8 -0
- cross_cell_type_generization/L6/Fibroblasts/fold4/.DS_Store +0 -0
- cross_cell_type_generization/L6/Fibroblasts/fold4/all_results.json +8 -0
- cross_cell_type_generization/L6/Fibroblasts/fold4/checkpoint-1496/config.json +25 -0
- cross_cell_type_generization/L6/Fibroblasts/fold4/checkpoint-1496/trainer_state.json +450 -0
- cross_cell_type_generization/L6/Fibroblasts/fold4/config.json +25 -0
- cross_cell_type_generization/L6/Fibroblasts/fold4/eval_results.json +8 -0
- cross_cell_type_generization/L6/Monocytes/.DS_Store +0 -0
- cross_cell_type_generization/L6/Monocytes/fold0/.DS_Store +0 -0
- cross_cell_type_generization/L6/Monocytes/fold0/all_results.json +8 -0
- cross_cell_type_generization/L6/Monocytes/fold0/checkpoint-1683/config.json +25 -0
- cross_cell_type_generization/L6/Monocytes/fold0/checkpoint-1683/trainer_state.json +508 -0
- cross_cell_type_generization/L6/Monocytes/fold0/config.json +25 -0
cross_cell_type_generization/L1/Neutrophils/.DS_Store
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Binary file (6.15 kB). View file
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cross_cell_type_generization/L1/Neutrophils/fold2/all_results.json
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{
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"test_accuracy": 0.8577777777777778,
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"test_loss": 0.3003818690776825,
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"test_macro_f1": 0.79050736497545,
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"test_runtime": 2.6302,
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"test_samples_per_second": 342.179,
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"test_steps_per_second": 3.422
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}
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cross_cell_type_generization/L1/Neutrophils/fold2/config.json
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{
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"architectures": [
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"BertForSequenceClassification"
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],
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"attention_probs_dropout_prob": 0.02,
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"classifier_dropout": null,
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.02,
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"hidden_size": 256,
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"initializer_range": 0.02,
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"intermediate_size": 512,
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"layer_norm_eps": 1e-12,
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"max_position_embeddings": 2048,
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"model_type": "bert",
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| 15 |
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"num_attention_heads": 4,
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| 16 |
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"num_hidden_layers": 1,
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"pad_token_id": 0,
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"position_embedding_type": "absolute",
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"problem_type": "single_label_classification",
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"torch_dtype": "float32",
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"transformers_version": "4.28.0",
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"type_vocab_size": 2,
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| 23 |
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"use_cache": true,
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| 24 |
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"vocab_size": 30522
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}
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cross_cell_type_generization/L1/Neutrophils/fold2/eval_results.json
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{
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"test_accuracy": 0.8577777777777778,
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"test_loss": 0.3003818690776825,
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"test_macro_f1": 0.79050736497545,
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"test_runtime": 2.6302,
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"test_samples_per_second": 342.179,
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"test_steps_per_second": 3.422
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| 8 |
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}
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cross_cell_type_generization/L6/Endotheliums/fold0/.DS_Store
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Binary file (6.15 kB). View file
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cross_cell_type_generization/L6/Endotheliums/fold0/all_results.json
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{
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"test_accuracy": 0.8911111111111111,
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"test_loss": 0.2676636278629303,
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"test_macro_f1": 0.8521513487417778,
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"test_runtime": 3.2705,
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"test_samples_per_second": 275.189,
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"test_steps_per_second": 2.752
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}
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cross_cell_type_generization/L6/Endotheliums/fold0/checkpoint-1683/config.json
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{
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"architectures": [
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"BertForSequenceClassification"
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],
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| 5 |
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"attention_probs_dropout_prob": 0.02,
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| 6 |
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"classifier_dropout": null,
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| 7 |
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.02,
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"hidden_size": 256,
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"initializer_range": 0.02,
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"intermediate_size": 512,
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"layer_norm_eps": 1e-12,
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"max_position_embeddings": 2048,
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"model_type": "bert",
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"num_attention_heads": 4,
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"num_hidden_layers": 6,
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"pad_token_id": 0,
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| 18 |
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"position_embedding_type": "absolute",
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| 19 |
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"problem_type": "single_label_classification",
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"torch_dtype": "float32",
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| 21 |
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"transformers_version": "4.28.0",
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| 22 |
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"type_vocab_size": 2,
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| 23 |
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"use_cache": true,
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| 24 |
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"vocab_size": 30522
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| 25 |
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}
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cross_cell_type_generization/L6/Endotheliums/fold0/checkpoint-1683/trainer_state.json
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cross_cell_type_generization/L6/Endotheliums/fold0/config.json
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cross_cell_type_generization/L6/Endotheliums/fold1/checkpoint-1870/config.json
ADDED
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cross_cell_type_generization/L6/Endotheliums/fold1/config.json
ADDED
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cross_cell_type_generization/L6/Endotheliums/fold1/eval_results.json
ADDED
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cross_cell_type_generization/L6/Endotheliums/fold3/all_results.json
ADDED
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cross_cell_type_generization/L6/Endotheliums/fold3/checkpoint-1683/config.json
ADDED
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cross_cell_type_generization/L6/Endotheliums/fold3/checkpoint-1683/trainer_state.json
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cross_cell_type_generization/L6/Fibroblasts/fold1/eval_results.json
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cross_cell_type_generization/L6/Fibroblasts/fold2/all_results.json
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cross_cell_type_generization/L6/Fibroblasts/fold2/checkpoint-1496/config.json
ADDED
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| 7 |
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|
| 8 |
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cross_cell_type_generization/L6/Fibroblasts/fold3/checkpoint-1683/config.json
ADDED
|
@@ -0,0 +1,25 @@
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|
| 1 |
+
{
|
| 2 |
+
"architectures": [
|
| 3 |
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"BertForSequenceClassification"
|
| 4 |
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],
|
| 5 |
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"attention_probs_dropout_prob": 0.02,
|
| 6 |
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"classifier_dropout": null,
|
| 7 |
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"hidden_act": "gelu",
|
| 8 |
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"hidden_dropout_prob": 0.02,
|
| 9 |
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"hidden_size": 256,
|
| 10 |
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"initializer_range": 0.02,
|
| 11 |
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|
| 12 |
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|
| 13 |
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"max_position_embeddings": 2048,
|
| 14 |
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"model_type": "bert",
|
| 15 |
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|
| 16 |
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"num_hidden_layers": 6,
|
| 17 |
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"pad_token_id": 0,
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| 18 |
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"position_embedding_type": "absolute",
|
| 19 |
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"problem_type": "single_label_classification",
|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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| 24 |
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| 25 |
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cross_cell_type_generization/L6/Fibroblasts/fold3/checkpoint-1683/trainer_state.json
ADDED
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@@ -0,0 +1,508 @@
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cross_cell_type_generization/L6/Fibroblasts/fold4/all_results.json
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cross_cell_type_generization/L6/Fibroblasts/fold4/checkpoint-1496/config.json
ADDED
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| 8 |
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cross_cell_type_generization/L6/Monocytes/fold0/checkpoint-1683/config.json
ADDED
|
@@ -0,0 +1,25 @@
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|
| 1 |
+
{
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| 2 |
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| 3 |
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| 4 |
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],
|
| 5 |
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"attention_probs_dropout_prob": 0.02,
|
| 6 |
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"classifier_dropout": null,
|
| 7 |
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|
| 8 |
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| 9 |
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|
| 10 |
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| 11 |
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| 12 |
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| 13 |
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| 14 |
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| 15 |
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|
| 16 |
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"num_hidden_layers": 6,
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| 17 |
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| 18 |
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| 19 |
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| 20 |
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| 21 |
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| 22 |
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| 23 |
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| 24 |
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| 25 |
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cross_cell_type_generization/L6/Monocytes/fold0/checkpoint-1683/trainer_state.json
ADDED
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@@ -0,0 +1,508 @@
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"max_position_embeddings": 2048,
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| 14 |
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"model_type": "bert",
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| 15 |
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| 16 |
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| 17 |
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| 18 |
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"position_embedding_type": "absolute",
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| 19 |
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"problem_type": "single_label_classification",
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| 20 |
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"torch_dtype": "float32",
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| 21 |
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"transformers_version": "4.28.0",
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| 22 |
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| 23 |
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| 24 |
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|
| 25 |
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}
|