karl2990's picture
Update spaCy pipeline
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{
"lang":"en",
"name":"med12_trf_weakly_supervised",
"version":"0.0.0",
"description":"",
"author":"",
"email":"",
"url":"",
"license":"",
"spacy_version":">=3.4.1,<3.5.0",
"spacy_git_version":"5c2a00cef",
"vectors":{
"width":0,
"vectors":0,
"keys":0,
"name":null
},
"labels":{
"transformer":[
],
"ner":[
"Denominator_Unit",
"Denominator_Value",
"Dose_Form",
"Medication_Name",
"NDC",
"Numerator_Unit",
"Numerator_Value",
"Product_Package_Type",
"Product_Package_Type_Value",
"Quantity_Factor_Unit",
"Quantity_Factor_Unit_Value",
"Quantity_Factor_Value"
],
"textcat":[
"OTHER",
"MEDICATION"
]
},
"pipeline":[
"transformer",
"ner",
"textcat"
],
"components":[
"transformer",
"ner",
"textcat"
],
"disabled":[
],
"performance":{
"ents_f":0.9989370304,
"ents_p":0.9995091177,
"ents_r":0.9983655976,
"ents_per_type":{
"Medication_Name":{
"p":0.9996324881,
"r":0.9996324881,
"f":0.9996324881
},
"Numerator_Value":{
"p":0.9997868713,
"r":0.9997868713,
"f":0.9997868713
},
"Numerator_Unit":{
"p":0.9995707233,
"r":0.9996780079,
"f":0.9996243628
},
"Quantity_Factor_Value":{
"p":0.9996254682,
"r":0.9992512168,
"f":0.9994383074
},
"Quantity_Factor_Unit":{
"p":0.999626587,
"r":0.9802270231,
"f":0.9898317619
},
"Dose_Form":{
"p":0.9988076786,
"r":0.9974994046,
"f":0.9981531129
},
"Product_Package_Type_Value":{
"p":1.0,
"r":0.9995982322,
"f":0.9997990757
},
"Product_Package_Type":{
"p":1.0,
"r":1.0,
"f":1.0
},
"NDC":{
"p":1.0,
"r":1.0,
"f":1.0
},
"Denominator_Unit":{
"p":0.9992788462,
"r":0.9995191152,
"f":0.9993989662
},
"Quantity_Factor_Unit_Value":{
"p":0.998816568,
"r":1.0,
"f":0.9994079337
},
"Denominator_Value":{
"p":0.9941176471,
"r":0.9941176471,
"f":0.9941176471
}
},
"cats_score":1.0,
"cats_score_desc":"macro F",
"cats_micro_p":1.0,
"cats_micro_r":1.0,
"cats_micro_f":1.0,
"cats_macro_p":1.0,
"cats_macro_r":1.0,
"cats_macro_f":1.0,
"cats_macro_auc":1.0,
"cats_f_per_type":{
"OTHER":{
"p":1.0,
"r":1.0,
"f":1.0
},
"MEDICATION":{
"p":1.0,
"r":1.0,
"f":1.0
}
},
"cats_macro_auc_per_type":0.0,
"transformer_loss":185.4749514628,
"ner_loss":1530.9722248258,
"textcat_loss":0.0000000003
},
"requirements":[
"spacy-transformers>=1.1.7,<1.2.0"
]
}