judithrosell
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README.md
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---
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license: mit
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base_model: microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext
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tags:
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- generated_from_trainer
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metrics:
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- precision
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- recall
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- f1
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- accuracy
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model-index:
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- name: PubMedBERT_BioNLP13CG_NER
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results: []
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---
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<!-- This model card has been generated automatically according to the information the Trainer had access to. You
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should probably proofread and complete it, then remove this comment. -->
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# PubMedBERT_BioNLP13CG_NER
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This model is a fine-tuned version of [microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext](https://huggingface.co/microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext) on the None dataset.
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It achieves the following results on the evaluation set:
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- Loss: 0.2094
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- Precision: 0.8591
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- Recall: 0.8404
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- F1: 0.8497
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- Accuracy: 0.9510
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## Model description
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More information needed
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## Intended uses & limitations
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More information needed
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## Training and evaluation data
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More information needed
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## Training procedure
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### Training hyperparameters
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The following hyperparameters were used during training:
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- learning_rate: 2e-05
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- train_batch_size: 16
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- eval_batch_size: 16
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- seed: 42
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- gradient_accumulation_steps: 2
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- total_train_batch_size: 32
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- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
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- lr_scheduler_type: linear
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- num_epochs: 3
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### Training results
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| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1 | Accuracy |
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|:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:|
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| No log | 0.99 | 95 | 0.3540 | 0.7748 | 0.7481 | 0.7612 | 0.9170 |
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| No log | 2.0 | 191 | 0.2264 | 0.8430 | 0.8356 | 0.8393 | 0.9467 |
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| No log | 2.98 | 285 | 0.2094 | 0.8591 | 0.8404 | 0.8497 | 0.9510 |
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### Framework versions
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- Transformers 4.35.2
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- Pytorch 2.1.0+cu121
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- Datasets 2.16.0
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- Tokenizers 0.15.0
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