judithrosell commited on
Commit
be3b97e
1 Parent(s): 06db142

End of training

Browse files
Files changed (1) hide show
  1. README.md +70 -0
README.md ADDED
@@ -0,0 +1,70 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: mit
3
+ base_model: microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext
4
+ tags:
5
+ - generated_from_trainer
6
+ metrics:
7
+ - precision
8
+ - recall
9
+ - f1
10
+ - accuracy
11
+ model-index:
12
+ - name: PubMedBERT_BioNLP13CG_NER
13
+ results: []
14
+ ---
15
+
16
+ <!-- This model card has been generated automatically according to the information the Trainer had access to. You
17
+ should probably proofread and complete it, then remove this comment. -->
18
+
19
+ # PubMedBERT_BioNLP13CG_NER
20
+
21
+ This model is a fine-tuned version of [microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext](https://huggingface.co/microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext) on the None dataset.
22
+ It achieves the following results on the evaluation set:
23
+ - Loss: 0.2094
24
+ - Precision: 0.8591
25
+ - Recall: 0.8404
26
+ - F1: 0.8497
27
+ - Accuracy: 0.9510
28
+
29
+ ## Model description
30
+
31
+ More information needed
32
+
33
+ ## Intended uses & limitations
34
+
35
+ More information needed
36
+
37
+ ## Training and evaluation data
38
+
39
+ More information needed
40
+
41
+ ## Training procedure
42
+
43
+ ### Training hyperparameters
44
+
45
+ The following hyperparameters were used during training:
46
+ - learning_rate: 2e-05
47
+ - train_batch_size: 16
48
+ - eval_batch_size: 16
49
+ - seed: 42
50
+ - gradient_accumulation_steps: 2
51
+ - total_train_batch_size: 32
52
+ - optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
53
+ - lr_scheduler_type: linear
54
+ - num_epochs: 3
55
+
56
+ ### Training results
57
+
58
+ | Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1 | Accuracy |
59
+ |:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:|
60
+ | No log | 0.99 | 95 | 0.3540 | 0.7748 | 0.7481 | 0.7612 | 0.9170 |
61
+ | No log | 2.0 | 191 | 0.2264 | 0.8430 | 0.8356 | 0.8393 | 0.9467 |
62
+ | No log | 2.98 | 285 | 0.2094 | 0.8591 | 0.8404 | 0.8497 | 0.9510 |
63
+
64
+
65
+ ### Framework versions
66
+
67
+ - Transformers 4.35.2
68
+ - Pytorch 2.1.0+cu121
69
+ - Datasets 2.16.0
70
+ - Tokenizers 0.15.0