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End of training

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README.md ADDED
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+ ---
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+ base_model: allenai/scibert_scivocab_uncased
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+ tags:
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+ - generated_from_trainer
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+ model-index:
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+ - name: CRAFT_SciBERT_NER
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+ results: []
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+ ---
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+
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+ <!-- This model card has been generated automatically according to the information the Trainer had access to. You
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+ should probably proofread and complete it, then remove this comment. -->
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+
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+ # CRAFT_SciBERT_NER
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+
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+ This model is a fine-tuned version of [allenai/scibert_scivocab_uncased](https://huggingface.co/allenai/scibert_scivocab_uncased) on the None dataset.
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+ It achieves the following results on the evaluation set:
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+ - Loss: 0.1143
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+ - Seqeval classification report: precision recall f1-score support
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+
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+ CHEBI 0.74 0.70 0.72 457
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+ CL 0.82 0.75 0.78 1099
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+ GGP 0.92 0.93 0.93 2232
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+ GO 0.78 0.84 0.81 2508
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+ SO 0.83 0.81 0.82 1365
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+ Taxon 0.99 0.99 0.99 87655
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+
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+ micro avg 0.98 0.98 0.98 95316
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+ macro avg 0.85 0.84 0.84 95316
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+ weighted avg 0.98 0.98 0.98 95316
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+
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+
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+ ## Model description
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+
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+ More information needed
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+
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+ ## Intended uses & limitations
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+
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+ More information needed
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+
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+ ## Training and evaluation data
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+
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+ More information needed
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+
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+ ## Training procedure
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+
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+ ### Training hyperparameters
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+
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+ The following hyperparameters were used during training:
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+ - learning_rate: 2e-05
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+ - train_batch_size: 16
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+ - eval_batch_size: 16
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+ - seed: 42
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+ - gradient_accumulation_steps: 2
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+ - total_train_batch_size: 32
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+ - optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
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+ - lr_scheduler_type: linear
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+ - num_epochs: 3
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+
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+ ### Training results
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+
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+ | Training Loss | Epoch | Step | Validation Loss | Seqeval classification report |
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+ |:-------------:|:-----:|:----:|:---------------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|
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+ | No log | 1.0 | 347 | 0.1140 | precision recall f1-score support
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+
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+ CHEBI 0.66 0.69 0.67 457
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+ CL 0.83 0.69 0.75 1099
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+ GGP 0.89 0.93 0.91 2232
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+ GO 0.76 0.85 0.80 2508
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+ SO 0.79 0.73 0.76 1365
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+ Taxon 0.99 0.99 0.99 87655
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+
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+ micro avg 0.97 0.97 0.97 95316
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+ macro avg 0.82 0.81 0.81 95316
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+ weighted avg 0.97 0.97 0.97 95316
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+ |
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+ | 0.1263 | 2.0 | 695 | 0.1126 | precision recall f1-score support
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+
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+ CHEBI 0.73 0.69 0.71 457
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+ CL 0.85 0.72 0.78 1099
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+ GGP 0.91 0.93 0.92 2232
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+ GO 0.74 0.87 0.80 2508
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+ SO 0.82 0.80 0.81 1365
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+ Taxon 0.99 0.99 0.99 87655
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+
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+ micro avg 0.97 0.97 0.97 95316
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+ macro avg 0.84 0.83 0.83 95316
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+ weighted avg 0.97 0.97 0.97 95316
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+ |
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+ | 0.0326 | 3.0 | 1041 | 0.1143 | precision recall f1-score support
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+
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+ CHEBI 0.74 0.70 0.72 457
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+ CL 0.82 0.75 0.78 1099
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+ GGP 0.92 0.93 0.93 2232
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+ GO 0.78 0.84 0.81 2508
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+ SO 0.83 0.81 0.82 1365
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+ Taxon 0.99 0.99 0.99 87655
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+
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+ micro avg 0.98 0.98 0.98 95316
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+ macro avg 0.85 0.84 0.84 95316
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+ weighted avg 0.98 0.98 0.98 95316
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+ |
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+
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+
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+ ### Framework versions
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+
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+ - Transformers 4.35.2
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+ - Pytorch 2.1.0+cu121
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+ - Datasets 2.15.0
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+ - Tokenizers 0.15.0
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