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autoencoder_16_latent_dims_oos_mode.pt

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+size 4624102

latent_df.parquet

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metrics.csv

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 Method,MSE,RMSE,TRACERx_MSE,TRACERx_RMSE,Other_MSE,Other_RMSE
-AE,0.012402085293980207,0.11136465010936014,0.012416841611374076,0.11143088266443049,0.01138081755804923,0.10668091468509834
-PCA,0.014820118987713422,0.12173791105367884,0.015185206212341228,0.12322826872248603,0.013179797174522938,0.11480329775107916
+AE,0.019080974611496507,0.13813390102178577,,,,
+PCA,0.017739890260749125,0.13319117936541114,,,,

model_config.json

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     "latent_dims": 16,
     "compression_mode": "samples",
     "model_type": "SimpleAE",
-    "input_dim": 2405,
+    "input_dim": 954,
     "layer_sizes": [
-      2405,
+      954,
       4096,
       2048,
       1024,
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   },
   "data_config": {
     "datasets": [
-      "tracerx",
-      "cellfm",
-      "gtex"
+      "tracerx"
     ],
     "data_path": "../datasets/TRACERx/tracerx_vst_counts_proper.csv",
     "normalization_range": "[-1, 1]",
     "harmonization_method": "imputation",
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+    "imputation_strategy": "fixed",
     "tracerx_priority_weight": 2.0
   },
   "training_results": {
     "best_epoch": 0,
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     "final_epoch": 0,
     "training_completed": true
   },
   "system_info": {
     "device": "cuda:0",
-    "timestamp": "2025-08-27T00:11:19.918840",
+    "timestamp": "2025-08-26T20:36:25.808003",
     "python_version": "3.10.12",
     "pytorch_version": "2.6.0+cu124"
   }

preprocessing_stats.json

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-    "_padded_1306",
-    "_padded_1307",
-    "_padded_1308",
-    "_padded_1309",
-    "_padded_1310",
-    "_padded_1311",
-    "_padded_1312",
-    "_padded_1313",
-    "_padded_1314",
-    "_padded_1315",
-    "_padded_1316",
-    "_padded_1317",
-    "_padded_1318",
-    "_padded_1319",
-    "_padded_1320",
-    "_padded_1321",
-    "_padded_1322",
-    "_padded_1323",
-    "_padded_1324",
-    "_padded_1325",
-    "_padded_1326",
-    "_padded_1327",
-    "_padded_1328",
-    "_padded_1329",
-    "_padded_1330",
-    "_padded_1331",
-    "_padded_1332",
-    "_padded_1333",
-    "_padded_1334",
-    "_padded_1335",
-    "_padded_1336",
-    "_padded_1337",
-    "_padded_1338",
-    "_padded_1339",
-    "_padded_1340",
-    "_padded_1341",
-    "_padded_1342",
-    "_padded_1343",
-    "_padded_1344",
-    "_padded_1345",
-    "_padded_1346",
-    "_padded_1347",
-    "_padded_1348",
-    "_padded_1349",
-    "_padded_1350",
-    "_padded_1351",
-    "_padded_1352",
-    "_padded_1353",
-    "_padded_1354"
+    "CRUK0729_SU_T1-R2"
   ]
 }