Update README.md
Browse files
README.md
CHANGED
@@ -1,3 +1,6 @@
|
|
|
|
|
|
|
|
1 |
from transformers import AutoTokenizer, AutoModelForMaskedLM
|
2 |
import numpy as np
|
3 |
import torch
|
@@ -29,3 +32,5 @@ torch_output = model.forward(
|
|
29 |
|
30 |
print(f"Gene expression predictions: {torch_output['gene_expression_predictions']}")
|
31 |
print(f"Final DNA embedding: {torch_output['final_dna_embeddings']}")
|
|
|
|
|
|
1 |
+
A small snippet of code is given here in order to retrieve embeddings and gene expression predictions given a DNA, RNA and protein sequence.
|
2 |
+
|
3 |
+
```python
|
4 |
from transformers import AutoTokenizer, AutoModelForMaskedLM
|
5 |
import numpy as np
|
6 |
import torch
|
|
|
32 |
|
33 |
print(f"Gene expression predictions: {torch_output['gene_expression_predictions']}")
|
34 |
print(f"Final DNA embedding: {torch_output['final_dna_embeddings']}")
|
35 |
+
|
36 |
+
```
|