stefan-insilico commited on
Commit
3951426
1 Parent(s): febc06d

Added generation configs

Browse files
generation-configs/diff2compound.json ADDED
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+ {"instruction": ["compound2diff2compound"], "tissue": ["whole blood"], "age": "", "cell": "u937", "efo": "", "datatype": "", "drug": "", "dose": "", "time": "", "case": "", "control": "", "dataset_type": "expression", "gender": "m ", "species": "human", "up": ["MMP3", "SLA", "PMS1", "S100A8", "AKR1C2", "ADD3", "INVS", "INSIG2", "KCTD12", "TAF1A", "MBNL2", "HERC2", "COG6", "IFNK", "SLC35A1", "TBL2", "SGMS1", "CLHC1", "EDEM3", "GMCL1", "ST6GALNAC4", "MTMR1", "RPUSD3", "ATG4C", "HOXC6", "GOLPH3L", "RAD50", "GLCE", "WRAP73", "NBR1", "GJA9", "RIMS3", "DNAAF2", "MRPL34", "TRMT61B", "CETN3", "HMG20A", "GPRIN3", "DHRS3", "METTL21A", "HEATR3", "MMD", "FOCAD", "RHOT1", "EMG1", "CDC26", "FRMD4B", "INTS8", "KLHL8", "ANKRD39", "NKIRAS1", "LIAS", "FARSA", "PREPL", "ZBTB48", "VAV3", "OXNAD1", "METTL23", "GPR84", "QSER1", "SLC16A6", "NDFIP2", "TUBGCP4", "HEATR5A", "XPO1", "ORC5", "SLC38A9", "COG5", "SLC4A7", "CRLS1", "MCEE", "LMBRD2", "ZMYND19", "LARS2", "NR2F6", "CHCHD4", "ACTR6", "PTPN14", "CDK19", "SLC25A12", "GMPR2", "NUDCD2", "ASB3", "GDE1", "MRPS26", "DHRS7B", "FUT8", "PAFAH2", "ECE2", "POLR3K", "NUP88", "FAM98A", "BAG4", "SATB1", "GTF2H2", "FASTKD1", "PIK3R4", "SPICE1", "MTFR1", "EML4"], "down": ["HCAR3", "CCNA1", "GCH1", "MARCKS", "TYMS", "C11orf96", "APOBEC3B", "HS3ST2", "XIRP1", "DGKI", "ATP2B1", "GSG1", "SERPINE2", "LIMS3", "TUBB2A", "HMGCS1", "C12orf75", "FCGR1A", "FCGR1B", "HEG1", "ITGA4", "CDC42EP3", "RAB27B", "FKBP5", "FAM72A", "ARNT2", "ASS1", "PHACTR1", "KLF4", "ZC3H12D", "IL22RA2", "CCNE2", "FEM1C", "UHRF1", "THAP2", "GSTO2", "CCNA2", "PMAIP1", "CYP51A1", "FOSB", "BCAT1", "CD109", "NREP", "SLC7A5", "C4orf46", "B3GNT5", "CPEB2", "NCR3LG1", "SCD", "MSX1", "DTL", "RBM3", "PIK3R3", "TESC", "SLFN5", "CREB5", "TMEM64", "USP53", "TLE3", "SFPQ", "PHLDA2", "CIRBP", "CACNA2D4", "SLC30A1", "IL32", "SHCBP1", "OGFRL1", "MAFF", "ATP1B1", "FAS", "IRF1", "LY86", "IL6R", "DHCR7", "TMEM217", "SPIN4", "SRGAP2", "GLS", "C3orf80", "ZNF367", "OTUD1", "SPSB1", "RNASE3", "GMEB1", "KBTBD8", "VWF", "RBM12", "CTSO", "FOXF1", "ARHGAP21", "HES4", "ACAT2", "CDCA7", "PSPC1", "S100P", "NSMAF", "CTNNAL1", "DPYSL2", "MT1G", "MT1E"]}
generation-configs/genes2pathway.json ADDED
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+ {"instruction": ["pathway2gene_list2pathway"], "pathway": "", "species": "human", "gene_list": []}
generation-configs/meta2diff.json ADDED
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+ {"instruction": ["disease2diff2disease", "age_individ2diff2age_individ"], "tissue": ["whole blood"], "age": 30, "cell": "u937", "efo": "Orphanet_139399", "datatype": "", "drug": "", "dose": "", "time": "", "case": "", "control": "", "dataset_type": "expression ", "gender": "m", "species": "mouse", "up": [], "down": []}