PreMode / r4-base.yaml
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name: r4-base
channels:
- anaconda
- conda-forge
- pytorch
- bioconda
- defaults
- primer
- r
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_kmp_llvm
- _r-mutex=1.0.1=anacondar_1
- arpack=3.7.0=hdefa2d7_2
- atk-1.0=2.36.0=h3371d22_4
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=2.0.0=pyhd8ed1ab_0
- bedtools=2.30.0=h7d7f7ad_1
- binutils_impl_linux-64=2.35.1=h193b22a_2
- binutils_linux-64=2.35=h67ddf6f_30
- bioconductor-annotationdbi=1.56.2=r41hdfd78af_0
- bioconductor-annotationfilter=1.18.0=r41hdfd78af_0
- bioconductor-batchelor=1.10.0=r41hc247a5b_2
- bioconductor-beachmat=2.10.0=r41hc247a5b_2
- bioconductor-biobase=2.54.0=r41hc0cfd56_2
- bioconductor-biocfilecache=2.2.0=r41hdfd78af_0
- bioconductor-biocgenerics=0.40.0=r41hdfd78af_0
- bioconductor-biocio=1.4.0=r41hdfd78af_0
- bioconductor-biocneighbors=1.12.0=r41hc247a5b_2
- bioconductor-biocparallel=1.28.3=r41hc247a5b_1
- bioconductor-biocsingular=1.10.0=r41hc247a5b_2
- bioconductor-biomart=2.50.0=r41hdfd78af_0
- bioconductor-biostrings=2.62.0=r41hc0cfd56_2
- bioconductor-complexheatmap=2.10.0=r41hdfd78af_0
- bioconductor-delayedarray=0.20.0=r41hc0cfd56_2
- bioconductor-delayedmatrixstats=1.16.0=r41hdfd78af_0
- bioconductor-ensdb.hsapiens.v86=2.99.0=r41hdfd78af_9
- bioconductor-ensembldb=2.18.1=r41hdfd78af_0
- bioconductor-fgsea=1.20.0=r41hc247a5b_2
- bioconductor-genomeinfodb=1.30.1=r41hdfd78af_0
- bioconductor-genomeinfodbdata=1.2.7=r41hdfd78af_2
- bioconductor-genomicalignments=1.30.0=r41hc0cfd56_2
- bioconductor-genomicfeatures=1.46.1=r41hdfd78af_0
- bioconductor-genomicranges=1.46.1=r41hc0cfd56_1
- bioconductor-hdf5array=1.22.1=r41hc0cfd56_1
- bioconductor-iranges=2.28.0=r41hc0cfd56_2
- bioconductor-keggrest=1.34.0=r41hdfd78af_0
- bioconductor-limma=3.50.3=r41hc0cfd56_0
- bioconductor-matrixgenerics=1.6.0=r41hdfd78af_0
- bioconductor-protgenerics=1.26.0=r41hdfd78af_0
- bioconductor-residualmatrix=1.4.0=r41hdfd78af_0
- bioconductor-rhdf5=2.38.1=r41hbe1951d_0
- bioconductor-rhdf5filters=1.6.0=r41hc247a5b_2
- bioconductor-rhdf5lib=1.16.0=r41hc0cfd56_2
- bioconductor-rhtslib=1.26.0=r41hc0cfd56_2
- bioconductor-rsamtools=2.10.0=r41hc247a5b_2
- bioconductor-rtracklayer=1.54.0=r41h171f361_4
- bioconductor-s4vectors=0.32.4=r41hc0cfd56_0
- bioconductor-scaledmatrix=1.2.0=r41hdfd78af_0
- bioconductor-scuttle=1.4.0=r41hc247a5b_2
- bioconductor-singlecellexperiment=1.16.0=r41hdfd78af_0
- bioconductor-sparsematrixstats=1.6.0=r41hc247a5b_2
- bioconductor-summarizedexperiment=1.24.0=r41hdfd78af_0
- bioconductor-xvector=0.34.0=r41hc0cfd56_2
- bioconductor-zlibbioc=1.40.0=r41hc0cfd56_2
- blas=2.108=mkl
- blas-devel=3.9.0=8_mkl
- boost-cpp=1.77.0=h312852a_0
- bwidget=1.9.14=ha770c72_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.1=hd590300_0
- ca-certificates=2024.2.2=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cairo=1.16.0=h6cf1ce9_1008
- certifi=2021.5.30=py36h5fab9bb_0
- cffi=1.14.6=py36hc120d54_0
- cfitsio=3.470=hb418390_7
- clinfo=3.0.21.02.21=h7f98852_0
- cni=0.8.0=hc0beb16_0
- cni-plugins=0.9.1=ha8f183a_0
- colormath=3.0.0=py_2
- cudatoolkit=11.1.1=h6406543_8
- curl=7.86.0=h7bff187_1
- decorator=4.4.2=py_0
- entrypoints=0.4=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- fftw=3.3.9=nompi_h74d3f13_101
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.1=hba837de_1004
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.10.4=h0708190_1
- freexl=1.0.6=h7f98852_0
- fribidi=1.0.10=h36c2ea0_0
- future=0.18.2=py36h5fab9bb_3
- gcc_impl_linux-64=9.3.0=h6df7d76_17
- gcc_linux-64=9.3.0=hf25ea35_30
- gdk-pixbuf=2.42.6=h04a7f16_0
- geos=3.9.1=h9c3ff4c_2
- geotiff=1.6.0=hcf90da6_5
- gettext=0.19.8.1=h0b5b191_1005
- gfortran_impl_linux-64=9.3.0=hc4a2995_18
- gfortran_linux-64=9.3.0=hdc58fab_30
- ghostscript=9.53.3=h58526e2_2
- giflib=5.2.1=h36c2ea0_2
- git-lfs=3.5.1=ha770c72_0
- glpk=4.65=h9202a9a_1004
- gmp=6.2.1=h58526e2_0
- graphite2=1.3.13=h58526e2_1001
- graphviz=2.49.1=h85b4f2f_0
- gsl=2.6=he838d99_2
- gtk2=2.24.33=h539f30e_1
- gts=0.7.6=h64030ff_2
- gxx_impl_linux-64=9.3.0=hbdd7822_17
- gxx_linux-64=9.3.0=h3fbe746_30
- h5py=3.1.0=nompi_py36hc1bc4f5_100
- harfbuzz=3.0.0=h83ec7ef_1
- hdf4=4.2.15=h10796ff_3
- hdf5=1.10.6=nompi_h6a2412b_1114
- icu=68.2=h9c3ff4c_0
- igraph=0.9.2=ha184e22_0
- imagemagick=7.1.0_7=pl5321hb118871_0
- ipykernel=5.5.5=py36hcb3619a_0
- ipython=7.16.1=py36he448a4c_2
- ipython_genutils=0.2.0=py_1
- jbig=2.1=h7f98852_2003
- jedi=0.17.2=py36h5fab9bb_1
- joblib=1.0.1=pyhd8ed1ab_0
- jpeg=9d=h36c2ea0_0
- jq=1.5=0
- json-c=0.15=h98cffda_0
- jupyter_client=7.1.2=pyhd8ed1ab_0
- jupyter_core=4.8.1=py36h5fab9bb_0
- kealib=1.4.14=hcc255d8_2
- kernel-headers_linux-64=2.6.32=h77966d4_13
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h3790be6_0
- ld_impl_linux-64=2.35.1=hea4e1c9_2
- leidenalg=0.8.4=py36hc4f0c31_0
- lerc=2.2.1=h9c3ff4c_0
- libarchive=3.5.2=hccf745f_1
- libblas=3.9.0=8_mkl
- libcblas=3.9.0=8_mkl
- libcurl=7.86.0=h7bff187_1
- libdap4=3.20.6=hd7c4107_2
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=hcdb4288_3
- libexpat=2.5.0=hcb278e6_1
- libffi=3.3=h58526e2_2
- libgcc=7.2.0=h69d50b8_2
- libgcc-devel_linux-64=9.3.0=hb95220a_17
- libgcc-ng=13.2.0=h807b86a_1
- libgd=2.3.3=h6ad9fb6_0
- libgdal=3.3.0=h3215d8d_1
- libgfortran-ng=9.5.0=h69a702a_19
- libgfortran5=9.5.0=hab08dfb_19
- libgit2=1.1.0=h3974521_1
- libglib=2.68.4=h3e27bee_0
- libglu=9.0.0=hf484d3e_1
- libgomp=13.2.0=h807b86a_1
- libiconv=1.16=h516909a_0
- libkml=1.3.0=h096b73e_7
- liblapack=3.9.0=8_mkl
- liblapacke=3.9.0=8_mkl
- libllvm10=10.0.1=he513fc3_3
- libnetcdf=4.8.0=nompi_hcd642e3_103
- libnghttp2=1.51.0=hdcd2b5c_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.12=pthreads_h4812303_1
- libpng=1.6.37=h21135ba_2
- libpq=13.5=hd57d9b9_1
- librsvg=2.52.2=hc3c00ef_0
- librttopo=1.1.0=h1185371_6
- libseccomp=2.4.4=h36c2ea0_0
- libsodium=1.0.18=h36c2ea0_1
- libspatialite=5.0.1=h20cb978_4
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-devel_linux-64=9.3.0=hf0c5c8d_17
- libstdcxx-ng=13.2.0=h7e041cc_1
- libtiff=4.3.0=hf544144_1
- libtool=2.4.6=h58526e2_1007
- libuuid=2.32.1=h7f98852_1000
- libv8=8.9.83=ha1d8edc_0
- libwebp=1.2.2=h3452ae3_0
- libwebp-base=1.2.2=h7f98852_1
- libxcb=1.13=h7f98852_1003
- libxml2=2.9.12=h72842e0_0
- libxslt=1.1.33=h15afd5d_2
- libzip=1.9.2=hc869a4a_1
- libzlib=1.2.13=hd590300_5
- llvm-openmp=16.0.6=h4dfa4b3_0
- llvmlite=0.36.0=py36h05121d2_0
- lz4-c=1.9.3=h9c3ff4c_0
- lzo=2.10=h516909a_1000
- make=4.3=hd18ef5c_1
- meme=5.4.1=py36pl5321h3d8a823_1
- metis=5.1.0=h58526e2_1006
- mkl=2020.4=h726a3e6_304
- mkl-devel=2020.4=ha770c72_305
- mkl-include=2020.4=h726a3e6_304
- mpfr=4.1.0=h9202a9a_1
- mpi=1.0=openmpi
- ncurses=6.4=hcb278e6_0
- nest-asyncio=1.6.0=pyhd8ed1ab_0
- networkx=2.5=py_0
- ninja=1.11.1=h924138e_0
- numba=0.53.1=py36h0c5f33e_0
- numpy=1.19.5=py36h2aa4a07_1
- ocl-icd=2.3.0=h7f98852_0
- ocl-icd-system=1.0.0=1
- openjdk=10.0.2=h14c3975_1015
- openjpeg=2.4.0=hb52868f_1
- openmpi=4.1.3=h8b79891_4
- openssl=1.1.1w=hd590300_0
- pandas=1.1.5=py36h284efc9_0
- pandoc=2.17.1.1=ha770c72_0
- pango=1.48.10=h54213e6_2
- parso=0.7.1=pyh9f0ad1d_0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.36=h032f7d1_1
- perl=5.32.1=4_hd590300_perl5
- perl-app-cpanminus=1.7047=pl5321hd8ed1ab_0
- perl-base=2.23=pl5321hdfd78af_2
- perl-business-isbn=3.007=pl5321hdfd78af_0
- perl-business-isbn-data=20210112.006=pl5321hdfd78af_0
- perl-carp=1.38=pl5321hdfd78af_4
- perl-cgi=4.56=pl5321h031d066_1
- perl-common-sense=3.75=pl5321hdfd78af_0
- perl-compress-raw-zlib=2.105=pl5321h87f3376_0
- perl-constant=1.33=pl5321hdfd78af_2
- perl-data-dumper=2.183=pl5321hec16e2b_1
- perl-dbi=1.643=pl5321hec16e2b_1
- perl-encode=3.19=pl5321hec16e2b_1
- perl-encode-locale=1.05=pl5321hdfd78af_7
- perl-exporter=5.72=pl5321hdfd78af_2
- perl-extutils-makemaker=7.70=pl5321hd8ed1ab_0
- perl-file-path=2.18=pl5321hd8ed1ab_0
- perl-file-spec=3.48_01=pl5321hdfd78af_2
- perl-file-temp=0.2304=pl5321hd8ed1ab_0
- perl-file-which=1.24=pl5321hd8ed1ab_0
- perl-html-parser=3.81=pl5321h4ac6f70_1
- perl-html-tagset=3.20=pl5321hdfd78af_4
- perl-html-template=2.97=pl5321hdfd78af_2
- perl-html-tree=5.07=pl5321hdfd78af_2
- perl-http-date=6.06=pl5321hdfd78af_0
- perl-http-message=6.36=pl5321hdfd78af_0
- perl-io-html=1.004=pl5321hdfd78af_0
- perl-json=4.10=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h4ac6f70_6
- perl-log-log4perl=1.55=pl5321hdfd78af_0
- perl-lwp-mediatypes=6.04=pl5321hdfd78af_1
- perl-math-cdf=0.1=pl5321h031d066_9
- perl-mime-base64=3.16=pl5321hec16e2b_2
- perl-parent=0.236=pl5321hdfd78af_2
- perl-scalar-list-utils=1.62=pl5321hec16e2b_1
- perl-test-nowarnings=1.06=pl5321hdfd78af_0
- perl-time-local=1.35=pl5321hdfd78af_0
- perl-timedate=2.33=pl5321hdfd78af_2
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- perl-uri=5.12=pl5321hdfd78af_0
- perl-url-encode=0.03=pl5321h9ee0642_0
- perl-xml-namespacesupport=1.12=pl5321hdfd78af_1
- perl-xml-parser=2.44_01=pl5321hc3e0081_1003
- perl-xml-sax=1.02=pl5321hdfd78af_1
- perl-xml-sax-base=1.09=pl5321hdfd78af_1
- perl-xml-sax-expat=0.51=pl5321hdfd78af_4
- perl-xml-simple=2.25=pl5321hdfd78af_2
- perl-xsloader=0.24=pl5321hd8ed1ab_0
- perl-yaml=1.30=pl5321hdfd78af_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pip=21.0.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pkg-config=0.29.2=h36c2ea0_1008
- poppler=21.03.0=h93df280_0
- poppler-data=0.4.11=hd8ed1ab_0
- postgresql=13.5=h2510834_1
- proj=8.0.0=h277dcde_0
- prompt-toolkit=3.0.36=pyha770c72_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pybedtools=0.8.2=py36hb377018_1
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.14.0=pyhd8ed1ab_0
- pynndescent=0.5.2=pyh44b312d_0
- pysam=0.16.0.1=py36h61e5637_3
- python=3.6.13=hffdb5ce_0_cpython
- python-dateutil=2.8.1=py_0
- python-igraph=0.9.1=py36h644ed5e_0
- python-louvain=0.15=pyhd3deb0d_0
- python_abi=3.6=1_cp36m
- pytorch=1.6.0=py3.6_cpu_0
- pytorch-cpu=1.6.0=cpu_py36h3ab7d31_1
- pytz=2021.1=pyhd8ed1ab_0
- pyzmq=22.3.0=py36h7068817_0
- r-abind=1.4_5=r41hc72bb7e_1004
- r-acepack=1.4.1=r41h859d828_1006
- r-ade4=1.7_22=r41he1ae0d6_0
- r-ape=5.7_1=r41h358215d_0
- r-askpass=1.1=r41h06615bd_3
- r-assertthat=0.2.1=r41hc72bb7e_3
- r-backports=1.4.1=r41h06615bd_1
- r-base=4.1.0=h9e01966_1
- r-base64enc=0.1_3=r41h06615bd_1005
- r-bh=1.81.0_1=r41hc72bb7e_0
- r-biglm=0.9_2.1=r41h859d828_0
- r-bio3d=2.4_4=r41h7525677_0
- r-biocmanager=1.30.21=r41hc72bb7e_0
- r-bit=4.0.5=r41h06615bd_0
- r-bit64=4.0.5=r41h06615bd_1
- r-bitops=1.0_7=r41h06615bd_1
- r-blob=1.2.4=r41hc72bb7e_0
- r-boot=1.3_28.1=r41hc72bb7e_0
- r-brew=1.0_8=r41hc72bb7e_1
- r-brio=1.1.3=r41h06615bd_1
- r-broom=1.0.5=r41hc72bb7e_0
- r-bslib=0.5.0=r41hc72bb7e_0
- r-cachem=1.0.8=r41h57805ef_0
- r-cairo=1.6_0=r41h06615bd_1
- r-callr=3.7.3=r41hc72bb7e_0
- r-car=3.1_2=r41hc72bb7e_0
- r-cardata=3.0_5=r41hc72bb7e_1
- r-caret=6.0_94=r41h133d619_0
- r-catools=1.18.2=r41h7525677_1
- r-cellranger=1.1.0=r41hc72bb7e_1005
- r-checkmate=2.2.0=r41h57805ef_0
- r-circlize=0.4.15=r41hc72bb7e_1
- r-class=7.3_22=r41h57805ef_0
- r-classint=0.4_3=r41h859d828_2
- r-cli=3.6.1=r41h38f115c_0
- r-clipr=0.8.0=r41hc72bb7e_1
- r-clock=0.7.0=r41ha503ecb_0
- r-clue=0.3_64=r41h133d619_0
- r-cluster=2.1.2=r41h859d828_0
- r-clusterr=1.3.1=r41h08d816e_0
- r-coda=0.19_4=r41hc72bb7e_1
- r-codetools=0.2_19=r41hc72bb7e_0
- r-colorspace=2.1_0=r41h133d619_0
- r-colourpicker=1.2.0=r41hc72bb7e_0
- r-commonmark=1.9.0=r41h133d619_0
- r-conquer=1.3.3=r41hbf9dc1e_0
- r-corrplot=0.92=r41hc72bb7e_1
- r-covr=3.6.2=r41h38f115c_0
- r-cowplot=1.1.1=r41hc72bb7e_1
- r-cpp11=0.4.3=r41hc72bb7e_0
- r-crayon=1.5.2=r41hc72bb7e_1
- r-credentials=1.3.2=r41hc72bb7e_1
- r-crosstalk=1.2.0=r41hc72bb7e_1
- r-curl=4.3.3=r41h06615bd_1
- r-data.table=1.14.8=r41h133d619_0
- r-dbi=1.1.3=r41hc72bb7e_1
- r-dbplyr=2.3.2=r41hc72bb7e_0
- r-deldir=1.0_2=r41h859d828_0
- r-dendextend=1.17.1=r41hc72bb7e_0
- r-desc=1.4.2=r41hc72bb7e_1
- r-devtools=2.4.3=r41hc72bb7e_0
- r-diagram=1.6.5=r41ha770c72_1
- r-dichromat=2.0_0.1=r41ha770c72_1
- r-diffobj=0.3.5=r41h06615bd_1
- r-digest=0.6.31=r41h38f115c_0
- r-doparallel=1.0.17=r41hc72bb7e_1
- r-dosnow=1.0.20=r41hc72bb7e_1
- r-dplyr=1.1.2=r41ha503ecb_0
- r-dqrng=0.3.0=r41h7525677_1
- r-dt=0.28=r41hc72bb7e_0
- r-e1071=1.7_13=r41h38f115c_0
- r-ellipse=0.4.5=r41hc72bb7e_0
- r-ellipsis=0.3.2=r41h06615bd_1
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- tktable=2.10=hb7b940f_3
- tmux=3.1=h1c4e50f_0
- tornado=6.1=py36h8f6f2f9_1
- traitlets=4.3.3=pyhd8ed1ab_2
- tzcode=2021a=h7f98852_2
- tzdata=2022a=h191b570_0
- udunits2=2.2.27.27=h360fe7b_0
- umap-learn=0.5.1=py36h5fab9bb_0
- unzip=6.0=h7f98852_3
- uriparser=0.9.7=hcb278e6_1
- wcwidth=0.2.10=pyhd8ed1ab_0
- wheel=0.36.2=pyhd3deb0d_0
- xerces-c=3.2.3=h9d8b166_2
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.0=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxpm=3.5.13=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h7b6447c_0
- zeromq=4.3.5=h59595ed_1
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0