PLM-Secondary-Structure-Generation

config.json

@@ -1,11 +1,11 @@
 {
-  "_name_or_path": "ElnaggarLab/ankh-large",
+  "_name_or_path": "ElnaggarLab/ankh-base",
   "architectures": [
     "T5ForConditionalGeneration"
   ],
-  "d_ff": 3840,
+  "d_ff": 3072,
   "d_kv": 64,
-  "d_model": 1536,
+  "d_model": 768,
   "decoder_start_token_id": 0,
   "dense_act_fn": "gelu_new",
   "dropout_rate": 0.0,
@@ -17,7 +17,7 @@
   "layer_norm_epsilon": 1e-06,
   "model_type": "t5",
   "num_decoder_layers": 24,
-  "num_heads": 16,
+  "num_heads": 12,
   "num_layers": 48,
   "output_past": true,
   "pad_token_id": 0,

generation_config.json

@@ -0,0 +1,7 @@
+{
+  "_from_model_config": true,
+  "decoder_start_token_id": 0,
+  "eos_token_id": 1,
+  "pad_token_id": 0,
+  "transformers_version": "4.31.0"
+}

pytorch_model.bin

@@ -1,3 +1,3 @@
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-size 7516852297
+oid sha256:8223ae93f5dcccb34916594612f63fc7e55e8da4f670ee2519c785e1b30371ec
+size 2946957165

tokenizer.json

@@ -1,7 +1,21 @@
 {
   "version": "1.0",
-  "truncation": null,
-  "padding": null,
+  "truncation": {
+    "direction": "Right",
+    "max_length": 559,
+    "strategy": "LongestFirst",
+    "stride": 0
+  },
+  "padding": {
+    "strategy": {
+      "Fixed": 559
+    },
+    "direction": "Right",
+    "pad_to_multiple_of": null,
+    "pad_id": 0,
+    "pad_type_id": 0,
+    "pad_token": "<pad>"
+  },
   "added_tokens": [
     {
       "id": 0,

tokenizer_config.json

@@ -122,7 +122,6 @@
   "extra_ids": 116,
   "model_max_length": 1000000000000000019884624838656,
   "pad_token": "<pad>",
-  "private": true,
   "tokenizer_class": "T5Tokenizer",
   "unk_token": "<unk>"
 }

training_args.bin

@@ -1,3 +1,3 @@
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+size 5499