periodic: oracle v2 v2 metrics.json
Browse files
runs/exp_oracle_v2_large_h100/metrics.json
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| 1 |
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{
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| 2 |
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"best_val_pearson_mean": 0.21939609944820404,
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"val_mse": 117.83132509208372,
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"val_pearson_mean": 0.21939609944820404,
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"val_spearman_mean": 0.14584314823150635,
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"val_pearson_per_cell": [
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0.34768345952033997,
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0.13075117766857147,
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0.1430322825908661,
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0.22112937271595,
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0.2677486538887024,
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0.37237128615379333,
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0.05305641144514084
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],
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"val_spearman_per_cell": [
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0.3007788062095642,
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0.07973786443471909,
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0.09007685631513596,
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0.15527746081352234,
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0.13351790606975555,
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0.24121247231960297,
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0.02030065655708313
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],
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"config": {
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"oracle": "deepstarr_7cell",
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"cell_types": [
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"Ex",
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"In",
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"OPC",
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"Ast",
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"Oli",
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"Mic",
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"End"
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],
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"input_length": 600,
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| 36 |
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"epochs": 300,
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| 37 |
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"batch_size": 128,
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| 38 |
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"learning_rate": 0.001,
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| 39 |
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"weight_decay": 5e-05,
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| 40 |
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"val_fraction": 0.05,
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"seed": 1234,
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| 42 |
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"early_stop_patience": 30,
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| 43 |
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"output_dir": "/workspace/dnathinker/runs/exp_oracle_v2_large_h100",
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| 44 |
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"device": "cuda",
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| 45 |
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"num_workers": 0,
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| 46 |
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"deepstarr_fc_dim": 512,
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| 47 |
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"deepstarr_conv_channels": [
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256,
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60,
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60,
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120
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],
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"deepstarr_conv_kernels": [
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7,
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3,
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5,
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| 57 |
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3
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],
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| 59 |
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"deepstarr_pool_kernels": [
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3,
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3,
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3,
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| 63 |
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3
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],
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| 65 |
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"deepstarr_dropout": 0.3,
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| 66 |
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"enformer_backbone_name": "EleutherAI/enformer-official-rough",
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| 67 |
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"enformer_embed_dim": 3072,
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| 68 |
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"enformer_input_length": 196608,
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| 69 |
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"hyenadna_backbone_name": "LongSafari/hyenadna-tiny-1k-seqlen-hf",
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"hyenadna_embed_dim": 128,
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| 71 |
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"hyenadna_input_length": 1000,
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| 72 |
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"hyenadna_dtype": "float32",
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| 73 |
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"sei_backbone_name": "FunSei",
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| 74 |
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"sei_embed_dim": 1024,
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| 75 |
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"sei_input_length": 4096
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| 76 |
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}
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| 77 |
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}
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