Done
Browse files- .gitignore +1 -0
- config.json +47 -0
- pytorch_model.bin +3 -0
- runs/Sep30_15-49-45_018248344cd1/1664552995.5406163/events.out.tfevents.1664552995.018248344cd1.67.1 +3 -0
- runs/Sep30_15-49-45_018248344cd1/events.out.tfevents.1664552995.018248344cd1.67.0 +3 -0
- special_tokens_map.json +7 -0
- tokenizer.json +0 -0
- tokenizer_config.json +15 -0
- training_args.bin +3 -0
- vocab.txt +0 -0
.gitignore
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checkpoint-*/
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config.json
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{
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"_name_or_path": "emilyalsentzer/Bio_ClinicalBERT",
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"architectures": [
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"BertForTokenClassification"
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],
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"attention_probs_dropout_prob": 0.1,
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"classifier_dropout": null,
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.1,
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"hidden_size": 768,
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"id2label": {
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"0": "B-Gene_or_gene_product",
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"1": "O",
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"2": "B-Cancer",
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"3": "I-Cancer",
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"4": "I-Gene_or_gene_product",
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"5": "B-Cell",
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"6": "I-Cell",
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"7": "B-Organ",
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"8": "I-Organ"
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},
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"initializer_range": 0.02,
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"intermediate_size": 3072,
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"label2id": {
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"B-Cancer": 2,
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"B-Cell": 5,
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"B-Gene_or_gene_product": 0,
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"B-Organ": 7,
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"I-Cancer": 3,
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"I-Cell": 6,
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"I-Gene_or_gene_product": 4,
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"I-Organ": 8,
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"O": 1
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},
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"layer_norm_eps": 1e-12,
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"max_position_embeddings": 512,
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"model_type": "bert",
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"num_attention_heads": 12,
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"num_hidden_layers": 12,
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"pad_token_id": 0,
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"position_embedding_type": "absolute",
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"torch_dtype": "float32",
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"transformers_version": "4.22.2",
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"type_vocab_size": 2,
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"use_cache": true,
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"vocab_size": 28996
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}
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pytorch_model.bin
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version https://git-lfs.github.com/spec/v1
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oid sha256:149a1931a78ab23b94001b8398d3f66ae7c4d6f8fc4056cc214f9285743e7281
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| 3 |
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size 430976817
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runs/Sep30_15-49-45_018248344cd1/1664552995.5406163/events.out.tfevents.1664552995.018248344cd1.67.1
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version https://git-lfs.github.com/spec/v1
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oid sha256:3f3455642357f173314253ffb4f96f6a0c0d25f7b2f57cac1ae44fda8598d8d6
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size 5522
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runs/Sep30_15-49-45_018248344cd1/events.out.tfevents.1664552995.018248344cd1.67.0
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version https://git-lfs.github.com/spec/v1
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oid sha256:f790a596566a903ee0bc385b2d19faa1242cb0f96f6fa278cdc25843c3fa0575
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size 10120
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special_tokens_map.json
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{
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"cls_token": "[CLS]",
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"mask_token": "[MASK]",
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"pad_token": "[PAD]",
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"sep_token": "[SEP]",
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"unk_token": "[UNK]"
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}
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tokenizer.json
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tokenizer_config.json
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{
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"cls_token": "[CLS]",
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"do_basic_tokenize": true,
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"do_lower_case": true,
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"mask_token": "[MASK]",
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"name_or_path": "emilyalsentzer/Bio_ClinicalBERT",
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"never_split": null,
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| 8 |
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"pad_token": "[PAD]",
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| 9 |
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"sep_token": "[SEP]",
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"special_tokens_map_file": null,
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"strip_accents": null,
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"tokenize_chinese_chars": true,
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"tokenizer_class": "BertTokenizer",
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"unk_token": "[UNK]"
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}
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training_args.bin
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version https://git-lfs.github.com/spec/v1
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oid sha256:daa04af6b71cf47b68b56a9f5e984641cf4bb63a5bc0b87679e79ec85fe7540c
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size 3375
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vocab.txt
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