Training in progress, epoch 1

config.json

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+{
+  "_name_or_path": "microsoft/biogpt",
+  "activation_dropout": 0.0,
+  "activation_function": "gelu_new",
+  "architectures": [
+    "GPT2ForTokenClassification"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "attn_pdrop": 0.1,
+  "bos_token_id": 0,
+  "embd_pdrop": 0.1,
+  "eos_token_id": 2,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "id2label": {
+    "0": "O",
+    "1": "B-Disease",
+    "2": "I-Disease"
+  },
+  "initializer_range": 0.02,
+  "intermediate_size": 4096,
+  "label2id": {
+    "B-Disease": 1,
+    "I-Disease": 2,
+    "O": 0
+  },
+  "layer_norm_eps": 1e-12,
+  "layer_norm_epsilon": 1e-05,
+  "layerdrop": 0.0,
+  "model_type": "gpt2",
+  "n_embd": 1024,
+  "n_head": 16,
+  "n_inner": null,
+  "n_layer": 24,
+  "n_positions": 1024,
+  "pad_token_id": 1,
+  "reorder_and_upcast_attn": false,
+  "resid_pdrop": 0.1,
+  "scale_attn_by_inverse_layer_idx": false,
+  "scale_attn_weights": true,
+  "scale_embedding": true,
+  "summary_activation": null,
+  "summary_first_dropout": 0.1,
+  "summary_proj_to_labels": true,
+  "summary_type": "cls_index",
+  "summary_use_proj": true,
+  "torch_dtype": "float32",
+  "transformers_version": "4.39.3",
+  "use_cache": true,
+  "vocab_size": 42384
+}

model.safetensors

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runs/Apr11_18-00-34_18a28c03e5a4/events.out.tfevents.1712858443.18a28c03e5a4.4162.0

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runs/Apr11_18-22-44_18a28c03e5a4/events.out.tfevents.1712859770.18a28c03e5a4.4162.1

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runs/Apr11_18-42-49_18a28c03e5a4/events.out.tfevents.1712860970.18a28c03e5a4.4162.2

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special_tokens_map.json

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+{
+  "bos_token": "<s>",
+  "eos_token": "</s>",
+  "pad_token": "<pad>",
+  "sep_token": "</s>",
+  "unk_token": "<unk>"
+}

tokenizer_config.json

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+{
+  "added_tokens_decoder": {
+    "0": {
+      "content": "<s>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
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+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
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+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
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+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "bos_token": "<s>",
+  "clean_up_tokenization_spaces": true,
+  "eos_token": "</s>",
+  "model_max_length": 1024,
+  "pad_token": "<pad>",
+  "sep_token": "</s>",
+  "tokenizer_class": "BioGptTokenizer",
+  "unk_token": "<unk>"
+}

training_args.bin

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