soilformer / modelling /loader.py
Kuangdai
Initial release of SoilFormer
6fb6c07
# loader.py
# -*- coding: utf-8 -*-
import ast
from io import BytesIO
from urllib.parse import urljoin
import pandas as pd
import requests
import torch
from PIL import Image
from torch.utils.data import Dataset, DataLoader
from torchvision import transforms
from utils import load_json
class CenterSquareCrop:
"""
Crop image to a centered square without resizing.
"""
def __call__(self, img: Image.Image):
w, h = img.size
if w == h:
return img
if w > h:
left = (w - h) // 2
right = left + h
top = 0
bottom = h
else:
top = (h - w) // 2
bottom = top + w
left = 0
right = w
return img.crop((left, top, right, bottom))
def build_image_transform(image_size: int):
return transforms.Compose([
CenterSquareCrop(),
transforms.Resize((image_size, image_size)),
transforms.ToTensor(),
])
def join_photo_root(photo_root: str, relative_path: str) -> str:
"""
Join photo_root and relative path.
Supports:
- local filesystem roots
- http / https roots
"""
if photo_root.startswith("http://") or photo_root.startswith("https://"): # noqa
return urljoin(photo_root.rstrip("/") + "/", relative_path)
return photo_root.rstrip("/") + "/" + relative_path.lstrip("/")
def parse_numeric_cell(value: str, n_in: int):
"""
Convert numeric csv cell to list[float].
Returns:
values, is_valid
Data assumption:
- Empty value is always ""
- Scalar numeric -> "12.3"
- Vector numeric -> "[1.2,3.4,5.6]"
"""
if value == "":
return [0.0] * n_in, False
if n_in == 1:
return [float(value)], True
vec = ast.literal_eval(value)
if len(vec) != n_in:
raise ValueError(f"Numeric vector length mismatch: expected {n_in}, got {len(vec)}")
return [float(v) for v in vec], True
class SoilFormerDataset(Dataset):
def __init__(
self,
csv_path: str,
photo_map_path: str,
cat_vocab_path: str,
numeric_vocab_path: str,
numeric_stats_path: str,
photo_root: str,
image_size: int = 512,
id_column: str = "id",
):
self.df = pd.read_csv(
csv_path,
keep_default_na=False,
na_filter=False,
low_memory=False,
)
self.photo_map = load_json(photo_map_path)
self.cat_vocab = load_json(cat_vocab_path)
self.numeric_vocab = load_json(numeric_vocab_path)
self.photo_root = photo_root
self.id_column = id_column
self.image_size = int(image_size)
self.image_transform = build_image_transform(self.image_size)
# Keep json order exactly
self.cat_columns = list(self.cat_vocab.keys())
self.numeric_groups = self.numeric_vocab["groups"]
self.numeric_stats_df = pd.read_csv(numeric_stats_path)
self.numeric_stats_index = self.numeric_stats_df.set_index("column")
# Numeric mean/std
self.numeric_stats = {}
for _, row in self.numeric_stats_df.iterrows():
col = row["column"]
mean = float(row["mean"])
std = float(row["std"])
if std == 0.0:
std = 1.0
self.numeric_stats[col] = (mean, std)
# For active masking
self.cat_mask_local_ids = torch.tensor(
[int(self.cat_vocab[col]["mask_local_id"]) for col in self.cat_columns],
dtype=torch.long,
)
def __len__(self):
return len(self.df)
def load_image(self, path: str):
if path.startswith("http://") or path.startswith("https://"): # noqa
resp = requests.get(path, timeout=(3, 10))
resp.raise_for_status()
img = Image.open(BytesIO(resp.content)).convert("RGB")
else:
img = Image.open(path).convert("RGB")
return self.image_transform(img)
def __getitem__(self, idx):
row = self.df.iloc[idx]
sample_id = row[self.id_column]
# -----------------------
# categorical features
# -----------------------
cat_ids = []
cat_valids = []
for col in self.cat_columns:
spec = self.cat_vocab[col]
label2id = spec["label2id"]
mask_id = spec["mask_local_id"]
value = row[col]
if value == "":
cat_ids.append(mask_id)
cat_valids.append(False)
else:
if value not in label2id:
raise KeyError(f"Unknown categorical value: column={col}, value={value!r}")
cat_ids.append(label2id[value])
cat_valids.append(True)
cat_ids = torch.tensor(cat_ids, dtype=torch.long)
cat_valids = torch.tensor(cat_valids, dtype=torch.bool)
# -----------------------
# numeric features
# -----------------------
numeric_values_by_nin = {}
numeric_valid_positions_by_nin = {}
for group in self.numeric_groups:
n_in = int(group["n_in"])
features = group["feature_names"]
values = []
valids = []
for feat in features:
cell = row[feat]
parsed, is_valid = parse_numeric_cell(cell, n_in)
if is_valid:
mean, std = self.numeric_stats[feat]
parsed = [(v - mean) / std for v in parsed]
values.append(parsed)
valids.append(is_valid)
numeric_values_by_nin[n_in] = torch.tensor(values, dtype=torch.float32)
numeric_valid_positions_by_nin[n_in] = torch.tensor(valids, dtype=torch.bool)
# -----------------------
# vision
# -----------------------
try:
relative_path = self.photo_map[sample_id]
full_path = join_photo_root(self.photo_root, relative_path)
image = self.load_image(full_path)
vision_valid = True
except Exception: # noqa
image = torch.zeros(3, self.image_size, self.image_size, dtype=torch.float32)
vision_valid = False
vision_valid = torch.tensor(vision_valid, dtype=torch.bool)
return {
"row_idx": torch.tensor(idx, dtype=torch.long),
"sample_id": sample_id,
"cat_local_ids": cat_ids,
"cat_valid_positions": cat_valids,
"numeric_values_by_nin": numeric_values_by_nin,
"numeric_valid_positions_by_nin": numeric_valid_positions_by_nin,
"pixel_values": image,
"vision_valid_positions": vision_valid,
}
@staticmethod
def collate_fn(batch):
cat_ids = torch.stack([b["cat_local_ids"] for b in batch], dim=0)
cat_valids = torch.stack([b["cat_valid_positions"] for b in batch], dim=0)
group_keys = list(batch[0]["numeric_values_by_nin"].keys())
numeric_values_by_nin = {}
numeric_valid_positions_by_nin = {}
for k in group_keys:
numeric_values_by_nin[k] = torch.stack(
[b["numeric_values_by_nin"][k] for b in batch],
dim=0,
)
numeric_valid_positions_by_nin[k] = torch.stack(
[b["numeric_valid_positions_by_nin"][k] for b in batch],
dim=0,
)
pixel_values = torch.stack([b["pixel_values"] for b in batch], dim=0)
vision_valid_positions = torch.stack([b["vision_valid_positions"] for b in batch], dim=0)
row_idx = torch.stack([b["row_idx"] for b in batch], dim=0)
sample_ids = [b["sample_id"] for b in batch]
return {
"row_idx": row_idx,
"sample_id": sample_ids,
"cat_local_ids": cat_ids,
"numeric_values_by_nin": numeric_values_by_nin,
"cat_valid_positions": cat_valids,
"numeric_valid_positions_by_nin": numeric_valid_positions_by_nin,
"pixel_values": pixel_values,
"vision_valid_positions": vision_valid_positions,
}
def perform_active_mask(self, batch, cat_ratio=0.15, num_ratio=0.15, seed=None):
"""
Apply active masking to categorical and numeric inputs.
Conventions
-----------
Input batch must contain:
- cat_local_ids: [B, M] LongTensor
- cat_valid_positions: [B, M] Bool/0-1 tensor
- numeric_values_by_nin: Dict[int, Tensor[B, V, n_in]]
- numeric_valid_positions_by_nin: Dict[int, Tensor[B, V]]
Output batch will additionally contain:
- original_cat_local_ids
- original_cat_valid_positions
- original_numeric_values_by_nin
- original_numeric_valid_positions_by_nin
- masked_cat_local_ids
- masked_cat_valid_positions
- masked_numeric_values_by_nin
- masked_numeric_valid_positions_by_nin
- cat_loss_mask: [B, M] BoolTensor
- numeric_loss_mask_by_nin: Dict[int, BoolTensor[B, V]]
Semantics
---------
- Only originally valid positions can be actively masked.
- Masked categorical positions:
local_id -> self.cat_mask_local_ids[col]
valid -> False
- Masked numeric positions:
values -> 0
valid -> False
- original_* fields always preserve the unmodified input batch content.
"""
# --------------------------------------------------
# Validate ratios
# --------------------------------------------------
if not (0.0 <= cat_ratio <= 1.0):
raise ValueError(f"cat_ratio must be in [0, 1], got {cat_ratio}")
if not (0.0 <= num_ratio <= 1.0):
raise ValueError(f"num_ratio must be in [0, 1], got {num_ratio}")
# --------------------------------------------------
# Validate required keys
# --------------------------------------------------
required_keys = [
"cat_local_ids",
"cat_valid_positions",
"numeric_values_by_nin",
"numeric_valid_positions_by_nin",
]
for k in required_keys:
if k not in batch:
raise KeyError(f"Missing key in batch: {k}")
cat_local_ids = batch["cat_local_ids"]
cat_valid_positions = batch["cat_valid_positions"]
numeric_values_by_nin = batch["numeric_values_by_nin"]
numeric_valid_positions_by_nin = batch["numeric_valid_positions_by_nin"]
if cat_local_ids.dim() != 2:
raise ValueError(f"cat_local_ids must be [B, M], got {tuple(cat_local_ids.shape)}")
if cat_valid_positions.shape != cat_local_ids.shape:
raise ValueError(
f"cat_valid_positions must match cat_local_ids shape, got "
f"{tuple(cat_valid_positions.shape)} vs {tuple(cat_local_ids.shape)}"
)
if not isinstance(numeric_values_by_nin, dict):
raise ValueError("numeric_values_by_nin must be a dict")
if not isinstance(numeric_valid_positions_by_nin, dict):
raise ValueError("numeric_valid_positions_by_nin must be a dict")
B, M = cat_local_ids.shape
device = cat_local_ids.device
if self.cat_mask_local_ids.dim() != 1 or self.cat_mask_local_ids.numel() != M:
raise ValueError(
f"self.cat_mask_local_ids must be [M] with M={M}, got {tuple(self.cat_mask_local_ids.shape)}"
)
cat_mask_local_ids = self.cat_mask_local_ids.to(device=device, dtype=cat_local_ids.dtype)
# --------------------------------------------------
# Random generator
# --------------------------------------------------
if device.type == "cuda":
generator = torch.Generator(device=device)
else:
generator = torch.Generator()
if seed is not None:
generator.manual_seed(seed)
# --------------------------------------------------
# Start from shallow copy only
# --------------------------------------------------
masked_batch = dict(batch)
# Preserve original aliases (do NOT deepcopy)
masked_batch["original_cat_local_ids"] = batch["cat_local_ids"]
masked_batch["original_cat_valid_positions"] = batch["cat_valid_positions"]
masked_batch["original_numeric_values_by_nin"] = batch["numeric_values_by_nin"]
masked_batch["original_numeric_valid_positions_by_nin"] = batch["numeric_valid_positions_by_nin"]
# --------------------------------------------------
# Fast path: no active masking at all
# --------------------------------------------------
if cat_ratio == 0.0 and num_ratio == 0.0:
masked_batch["masked_cat_local_ids"] = batch["cat_local_ids"]
masked_batch["masked_cat_valid_positions"] = batch["cat_valid_positions"]
masked_batch["masked_numeric_values_by_nin"] = batch["numeric_values_by_nin"]
masked_batch["masked_numeric_valid_positions_by_nin"] = batch["numeric_valid_positions_by_nin"]
masked_batch["cat_loss_mask"] = torch.zeros(
(B, M), dtype=torch.bool, device=device
)
masked_batch["numeric_loss_mask_by_nin"] = {
n_in: torch.zeros_like(valid_positions, dtype=torch.bool)
for n_in, valid_positions in numeric_valid_positions_by_nin.items()
}
return masked_batch
# --------------------------------------------------
# Categorical masking
# --------------------------------------------------
original_cat_valid_positions = cat_valid_positions.bool()
masked_cat_local_ids = cat_local_ids.clone()
masked_cat_valid_positions = original_cat_valid_positions.clone()
cat_loss_mask = torch.zeros((B, M), dtype=torch.bool, device=device)
if cat_ratio > 0.0:
for b in range(B):
valid_idx = torch.nonzero(original_cat_valid_positions[b], as_tuple=False).squeeze(1)
n_valid = valid_idx.numel()
if n_valid == 0:
continue
k = int(round(n_valid * cat_ratio))
if k <= 0:
continue
if k > n_valid:
k = n_valid
perm = valid_idx[
torch.randperm(n_valid, generator=generator, device=device)[:k]
]
cat_loss_mask[b, perm] = True
expanded_cat_mask_ids = cat_mask_local_ids.view(1, M).expand(B, M)
masked_cat_local_ids[cat_loss_mask] = expanded_cat_mask_ids[cat_loss_mask]
masked_cat_valid_positions = masked_cat_valid_positions & (~cat_loss_mask)
masked_batch["masked_cat_local_ids"] = masked_cat_local_ids
masked_batch["masked_cat_valid_positions"] = masked_cat_valid_positions
masked_batch["cat_loss_mask"] = cat_loss_mask
# --------------------------------------------------
# Numeric masking
# --------------------------------------------------
masked_numeric_values_by_nin = {}
masked_numeric_valid_positions_by_nin = {}
numeric_loss_mask_by_nin = {}
# keep deterministic ordering if caller passed mixed int-like keys
for n_in in sorted(numeric_values_by_nin.keys(), key=int):
values = numeric_values_by_nin[n_in]
if n_in not in numeric_valid_positions_by_nin:
raise KeyError(f"Missing numeric_valid_positions_by_nin[{n_in}]")
valid_positions = numeric_valid_positions_by_nin[n_in]
if values.dim() != 3:
raise ValueError(
f"numeric_values_by_nin[{n_in}] must be [B, V, n_in], got {tuple(values.shape)}"
)
Bn, V, Nin = values.shape
if Bn != B:
raise ValueError(
f"numeric_values_by_nin[{n_in}] batch mismatch: got {Bn}, expected {B}"
)
if int(Nin) != int(n_in):
raise ValueError(
f"numeric_values_by_nin[{n_in}] last dim mismatch: got {Nin}, expected {n_in}"
)
if valid_positions.shape != (B, V):
raise ValueError(
f"numeric_valid_positions_by_nin[{n_in}] must be [B,V]=({B},{V}), "
f"got {tuple(valid_positions.shape)}"
)
original_valid = valid_positions.bool()
# IMPORTANT: clone before modifying
masked_values = values.clone()
masked_valid_positions = original_valid.clone()
num_loss_mask = torch.zeros((B, V), dtype=torch.bool, device=values.device)
if num_ratio > 0.0:
for b in range(B):
valid_idx = torch.nonzero(original_valid[b], as_tuple=False).squeeze(1)
n_valid = valid_idx.numel()
if n_valid == 0:
continue
k = int(round(n_valid * num_ratio))
if k <= 0:
continue
if k > n_valid:
k = n_valid
perm = valid_idx[
torch.randperm(n_valid, generator=generator, device=values.device)[:k]
]
num_loss_mask[b, perm] = True
# masked numeric columns become zero and invalid
masked_values[num_loss_mask] = 0.0
masked_valid_positions = masked_valid_positions & (~num_loss_mask)
masked_numeric_values_by_nin[n_in] = masked_values
masked_numeric_valid_positions_by_nin[n_in] = masked_valid_positions
numeric_loss_mask_by_nin[n_in] = num_loss_mask
masked_batch["masked_numeric_values_by_nin"] = masked_numeric_values_by_nin
masked_batch["masked_numeric_valid_positions_by_nin"] = masked_numeric_valid_positions_by_nin
masked_batch["numeric_loss_mask_by_nin"] = numeric_loss_mask_by_nin
return masked_batch
def perform_active_mask_single(self, batch, feature_name, assert_not_missing=True):
"""
Actively mask exactly one feature specified by feature_name.
Parameters
----------
batch : dict
Same input convention as perform_active_mask(...).
feature_name : str
Full feature name. Can be either categorical or numeric.
assert_not_missing : bool
If True, require the target feature to be originally valid for all samples
in the batch. Otherwise raise ValueError.
If False, only originally valid positions are masked; naturally missing
positions remain missing and are not included in the loss mask.
Returns
-------
masked_batch : dict
Same output convention as perform_active_mask(...), except that exactly
one feature is actively masked.
"""
# --------------------------------------------------
# Validate required keys
# --------------------------------------------------
required_keys = [
"cat_local_ids",
"cat_valid_positions",
"numeric_values_by_nin",
"numeric_valid_positions_by_nin",
]
for k in required_keys:
if k not in batch:
raise KeyError(f"Missing key in batch: {k}")
cat_local_ids = batch["cat_local_ids"]
cat_valid_positions = batch["cat_valid_positions"]
numeric_values_by_nin = batch["numeric_values_by_nin"]
numeric_valid_positions_by_nin = batch["numeric_valid_positions_by_nin"]
if cat_local_ids.dim() != 2:
raise ValueError(f"cat_local_ids must be [B, M], got {tuple(cat_local_ids.shape)}")
if cat_valid_positions.shape != cat_local_ids.shape:
raise ValueError(
f"cat_valid_positions must match cat_local_ids shape, got "
f"{tuple(cat_valid_positions.shape)} vs {tuple(cat_local_ids.shape)}"
)
if not isinstance(numeric_values_by_nin, dict):
raise ValueError("numeric_values_by_nin must be a dict")
if not isinstance(numeric_valid_positions_by_nin, dict):
raise ValueError("numeric_valid_positions_by_nin must be a dict")
B, M = cat_local_ids.shape
device = cat_local_ids.device
if self.cat_mask_local_ids.dim() != 1 or self.cat_mask_local_ids.numel() != M:
raise ValueError(
f"self.cat_mask_local_ids must be [M] with M={M}, got {tuple(self.cat_mask_local_ids.shape)}"
)
cat_mask_local_ids = self.cat_mask_local_ids.to(device=device, dtype=cat_local_ids.dtype)
# --------------------------------------------------
# Resolve feature_name -> categorical col or numeric (n_in, v_idx)
# --------------------------------------------------
# Assumptions:
# - self.cat_vocab is the categorical vocab dict keyed by full feature name
# - self.numeric_vocab contains:
# numeric_vocab["ordered_feature_names"]
# numeric_vocab["features"][name]["n_in"]
# numeric_vocab["features"][name]["col_id"]
#
# If your actual attribute names differ, only this block needs adaptation.
is_cat = False
is_num = False
cat_col = None
num_n_in = None
num_v_idx = None
# categorical
if hasattr(self, "cat_vocab") and feature_name in self.cat_vocab:
is_cat = True
cat_col = int(self.cat_vocab[feature_name]["col_id"])
# numeric
if hasattr(self, "numeric_vocab"):
num_features = self.numeric_vocab.get("features", {})
if feature_name in num_features:
is_num = True
meta = num_features[feature_name]
num_n_in = int(meta["n_in"])
num_v_idx = int(meta["col_id"])
if is_cat and is_num:
raise ValueError(f"Feature name appears in both categorical and numeric vocab: {feature_name}")
if not is_cat and not is_num:
raise KeyError(f"Unknown feature_name: {feature_name}")
# --------------------------------------------------
# Start from shallow copy only
# --------------------------------------------------
masked_batch = dict(batch)
# Preserve original aliases (do NOT deepcopy)
masked_batch["original_cat_local_ids"] = batch["cat_local_ids"]
masked_batch["original_cat_valid_positions"] = batch["cat_valid_positions"]
masked_batch["original_numeric_values_by_nin"] = batch["numeric_values_by_nin"]
masked_batch["original_numeric_valid_positions_by_nin"] = batch["numeric_valid_positions_by_nin"]
# --------------------------------------------------
# Default: no masking anywhere
# --------------------------------------------------
masked_cat_local_ids = batch["cat_local_ids"].clone()
masked_cat_valid_positions = batch["cat_valid_positions"].bool().clone()
cat_loss_mask = torch.zeros((B, M), dtype=torch.bool, device=device)
masked_numeric_values_by_nin = {}
masked_numeric_valid_positions_by_nin = {}
numeric_loss_mask_by_nin = {}
for n_in in sorted(numeric_values_by_nin.keys(), key=int):
values = numeric_values_by_nin[n_in]
if n_in not in numeric_valid_positions_by_nin:
raise KeyError(f"Missing numeric_valid_positions_by_nin[{n_in}]")
valid_positions = numeric_valid_positions_by_nin[n_in]
if values.dim() != 3:
raise ValueError(
f"numeric_values_by_nin[{n_in}] must be [B, V, n_in], got {tuple(values.shape)}"
)
Bn, V, Nin = values.shape
if Bn != B:
raise ValueError(
f"numeric_values_by_nin[{n_in}] batch mismatch: got {Bn}, expected {B}"
)
if int(Nin) != int(n_in):
raise ValueError(
f"numeric_values_by_nin[{n_in}] last dim mismatch: got {Nin}, expected {n_in}"
)
if valid_positions.shape != (B, V):
raise ValueError(
f"numeric_valid_positions_by_nin[{n_in}] must be [B,V]=({B},{V}), "
f"got {tuple(valid_positions.shape)}"
)
masked_numeric_values_by_nin[n_in] = values.clone()
masked_numeric_valid_positions_by_nin[n_in] = valid_positions.bool().clone()
numeric_loss_mask_by_nin[n_in] = torch.zeros((B, V), dtype=torch.bool, device=values.device)
# --------------------------------------------------
# Apply single-feature masking
# --------------------------------------------------
if is_cat:
original_valid = cat_valid_positions[:, cat_col].bool() # [B]
if assert_not_missing and not bool(original_valid.all().item()):
n_bad = int((~original_valid).sum().item())
raise ValueError(
f"Categorical feature '{feature_name}' has {n_bad} naturally missing samples in batch"
)
# only originally valid positions are actively masked
cat_loss_mask[:, cat_col] = original_valid
masked_cat_local_ids[cat_loss_mask] = cat_mask_local_ids.view(1, M).expand(B, M)[cat_loss_mask]
masked_cat_valid_positions = masked_cat_valid_positions & (~cat_loss_mask)
else:
if num_n_in not in masked_numeric_values_by_nin:
raise KeyError(f"numeric_values_by_nin does not contain n_in={num_n_in} for {feature_name}")
values = masked_numeric_values_by_nin[num_n_in]
valid_positions = masked_numeric_valid_positions_by_nin[num_n_in]
num_loss_mask = numeric_loss_mask_by_nin[num_n_in]
if num_v_idx >= values.shape[1]:
raise IndexError(
f"Numeric feature '{feature_name}' resolved to v_idx={num_v_idx}, "
f"but numeric_values_by_nin[{num_n_in}] has V={values.shape[1]}"
)
original_valid = valid_positions[:, num_v_idx].bool() # [B]
if assert_not_missing and not bool(original_valid.all().item()):
n_bad = int((~original_valid).sum().item())
raise ValueError(
f"Numeric feature '{feature_name}' has {n_bad} naturally missing samples in batch"
)
# only originally valid positions are actively masked
num_loss_mask[:, num_v_idx] = original_valid
values[num_loss_mask] = 0.0
valid_positions[:] = valid_positions & (~num_loss_mask)
# --------------------------------------------------
# Finalize outputs
# --------------------------------------------------
masked_batch["masked_cat_local_ids"] = masked_cat_local_ids
masked_batch["masked_cat_valid_positions"] = masked_cat_valid_positions
masked_batch["cat_loss_mask"] = cat_loss_mask
masked_batch["masked_numeric_values_by_nin"] = masked_numeric_values_by_nin
masked_batch["masked_numeric_valid_positions_by_nin"] = masked_numeric_valid_positions_by_nin
masked_batch["numeric_loss_mask_by_nin"] = numeric_loss_mask_by_nin
return masked_batch
def build_train_eval_dataloaders(
dataset,
train_ratio=0.8,
seed=42,
batch_size=32,
):
n = len(dataset)
n_train = int(n * train_ratio)
n_eval = n - n_train
split_generator = torch.Generator().manual_seed(seed)
train_ds, eval_ds = torch.utils.data.random_split(
dataset,
[n_train, n_eval],
generator=split_generator
)
train_generator = torch.Generator()
train_loader = DataLoader(
train_ds,
batch_size=batch_size,
shuffle=True,
collate_fn=dataset.collate_fn,
generator=train_generator,
)
eval_loader = DataLoader(
eval_ds,
batch_size=batch_size,
shuffle=False,
collate_fn=dataset.collate_fn,
)
return train_loader, eval_loader, train_generator
def debug_print_first_sample(dataset, batch, batch_pos=0):
"""
Inspect one sample in a batch.
This debug function checks masked_* fields against the original csv row.
Positions in loss_mask are allowed to mismatch.
Args:
dataset: SoilFormerDataset
batch: collated + optionally masked batch
batch_pos: index inside the batch (not dataset row index)
"""
import math
def numeric_list_close(a, b, atol=1e-6, rtol=1e-5):
if len(a) != len(b):
return False
for x, y in zip(a, b):
if not math.isclose(float(x), float(y), rel_tol=rtol, abs_tol=atol):
return False
return True
def normalize_numeric_list(feat_name, vals, is_valid):
if not is_valid:
return [0.0] * len(vals)
stat_row = dataset.numeric_stats_index.loc[feat_name]
mean = float(stat_row["mean"])
std = float(stat_row["std"])
if std == 0.0:
std = 1.0
return [(float(v) - mean) / std for v in vals]
if "row_idx" not in batch:
raise KeyError("batch must contain 'row_idx' for debug_print_first_sample")
if "sample_id" not in batch:
raise KeyError("batch must contain 'sample_id' for debug_print_first_sample")
row_idx = int(batch["row_idx"][batch_pos].item())
row = dataset.df.iloc[row_idx]
sample_id = batch["sample_id"][batch_pos]
print("\n====================================================")
print("DEBUG SAMPLE")
print("====================================================")
print("batch_pos :", batch_pos)
print("row_idx :", row_idx)
print("sample_id :", sample_id)
# ====================================================
# categorical
# ====================================================
print("\n[CATEGORICAL FEATURES]")
cat_ids = batch["masked_cat_local_ids"][batch_pos]
cat_valids = batch["masked_cat_valid_positions"][batch_pos]
cat_loss_mask = batch.get("cat_loss_mask", None)
if cat_loss_mask is not None:
cat_loss_mask = cat_loss_mask[batch_pos]
for i, col in enumerate(dataset.cat_columns):
raw = row[col]
raw_str = str(raw)
got_id = int(cat_ids[i].item())
got_valid = bool(cat_valids[i].item())
spec = dataset.cat_vocab[col]
label2id = spec["label2id"]
mask_id = int(spec["mask_local_id"])
if raw == "":
expected_id = mask_id
expected_valid = False
else:
expected_id = int(label2id[raw])
expected_valid = True
is_loss_position = False
if cat_loss_mask is not None:
is_loss_position = bool(cat_loss_mask[i].item())
if is_loss_position:
ok = True
else:
ok = (got_id == expected_id) and (got_valid == expected_valid)
print(
f"{i:03d} | {col} | "
f"raw={raw_str:<60} | "
f"id={got_id:<6} | expected={expected_id:<6} | "
f"valid={got_valid} | exp_valid={expected_valid} | "
f"loss_mask={is_loss_position} | ok={ok}"
)
if not ok:
raise AssertionError(
f"\nCategorical mismatch\n"
f"batch_pos={batch_pos}\n"
f"row_idx={row_idx}\n"
f"feature={col}\n"
f"raw={raw}\n"
f"id={got_id}, expected={expected_id}\n"
f"valid={got_valid}, expected={expected_valid}"
)
# ====================================================
# numeric
# ====================================================
print("\n[NUMERIC FEATURES]")
numeric_loss_mask_by_nin = batch.get("numeric_loss_mask_by_nin", None)
for group in dataset.numeric_groups:
n_in = int(group["n_in"])
features = group["feature_names"]
values = batch["masked_numeric_values_by_nin"][n_in][batch_pos]
valids = batch["masked_numeric_valid_positions_by_nin"][n_in][batch_pos]
if numeric_loss_mask_by_nin is not None:
loss_mask = numeric_loss_mask_by_nin[n_in][batch_pos]
else:
loss_mask = None
print(f"\nGroup n_in={n_in}")
for i, feat in enumerate(features):
raw = row[feat]
raw_str = str(raw)
parsed, expected_valid = parse_numeric_cell(raw, n_in)
expected_norm = normalize_numeric_list(feat, parsed, expected_valid)
tensor_val = values[i].tolist()
got_valid = bool(valids[i].item())
is_loss_position = False
if loss_mask is not None:
is_loss_position = bool(loss_mask[i].item())
if is_loss_position:
ok = True
else:
value_ok = numeric_list_close(tensor_val, expected_norm)
valid_ok = (got_valid == expected_valid)
ok = value_ok and valid_ok
print(
f"{i:03d} | {feat} | "
f"raw={raw_str:<60} | "
f"tensor={tensor_val} | expected_norm={expected_norm} | "
f"valid={got_valid} | exp_valid={expected_valid} | "
f"loss_mask={is_loss_position} | ok={ok}"
)
if not ok:
raise AssertionError(
f"\nNumeric mismatch\n"
f"batch_pos={batch_pos}\n"
f"row_idx={row_idx}\n"
f"feature={feat}\n"
f"raw={raw}\n"
f"tensor={tensor_val}\n"
f"expected={parsed}\n"
f"valid={got_valid}, expected={expected_valid}"
)
# ====================================================
# vision
# ====================================================
print("\n[VISION]")
try:
relative_path = dataset.photo_map[sample_id]
expected_path = join_photo_root(dataset.photo_root, relative_path)
# Use the same logic as __getitem__: valid only if image can actually be loaded
_ = dataset.load_image(expected_path)
expected_valid = True
except Exception: # noqa
expected_path = None
expected_valid = False
got_valid = bool(batch["vision_valid_positions"][batch_pos].item())
img_shape = tuple(batch["pixel_values"][batch_pos].shape)
print("expected_path :", expected_path)
print("vision_valid :", got_valid)
print("image_shape :", img_shape)
if got_valid != expected_valid:
raise AssertionError(
f"\nVision validity mismatch\n"
f"batch_pos={batch_pos}\n"
f"row_idx={row_idx}\n"
f"expected={expected_valid}, got={got_valid}"
)
print("\n====================================================")
print("DEBUG CHECK PASSED")
print("====================================================\n")
def main():
dataset = SoilFormerDataset(
csv_path="data/tabular_data.csv",
photo_map_path="data/photo_map.json",
cat_vocab_path="data/cat_vocab.json",
numeric_vocab_path="data/numeric_vocab.json",
numeric_stats_path="data/tabular_meta_numeric_stats.csv",
photo_root="/Volumes/TOSHIBA EXT",
image_size=512,
id_column="id",
)
train_loader, eval_loader, train_generator = build_train_eval_dataloaders(dataset)
print("Dataset size:", len(dataset))
raw_batch = next(iter(eval_loader))
batch = dataset.perform_active_mask(
raw_batch,
cat_ratio=0.15,
num_ratio=0.15,
seed=42,
)
print("\nBatch check")
if "row_idx" in batch:
print("row_idx:", batch["row_idx"].shape, batch["row_idx"].dtype)
if "sample_id" in batch:
print("sample_id:", len(batch["sample_id"]))
print("original_cat_local_ids:", batch["original_cat_local_ids"].shape)
print("masked_cat_local_ids:", batch["masked_cat_local_ids"].shape)
print("original_cat_valid_positions:", batch["original_cat_valid_positions"].shape)
print("masked_cat_valid_positions:", batch["masked_cat_valid_positions"].shape)
print("cat_loss_mask:", batch["cat_loss_mask"].shape)
for k, v in batch["original_numeric_values_by_nin"].items():
print(f"original_numeric_values_by_nin[{k}]:", v.shape)
for k, v in batch["masked_numeric_values_by_nin"].items():
print(f"masked_numeric_values_by_nin[{k}]:", v.shape)
for k, v in batch["original_numeric_valid_positions_by_nin"].items():
print(f"original_numeric_valid_positions_by_nin[{k}]:", v.shape)
for k, v in batch["masked_numeric_valid_positions_by_nin"].items():
print(f"masked_numeric_valid_positions_by_nin[{k}]:", v.shape)
for k, v in batch["numeric_loss_mask_by_nin"].items():
print(f"numeric_loss_mask_by_nin[{k}]:", v.shape)
print("pixel_values:", batch["pixel_values"].shape)
print("vision_valid_positions:", batch["vision_valid_positions"].shape)
print("\nTensor dtype check")
print("masked cat ids dtype:", batch["masked_cat_local_ids"].dtype)
print("masked numeric dtype:", next(iter(batch["masked_numeric_values_by_nin"].values())).dtype)
print("image dtype:", batch["pixel_values"].dtype)
print("\nLoader test finished successfully")
debug_print_first_sample(dataset, batch, batch_pos=0)
if __name__ == "__main__":
main()