| { | |
| "lang":"en", | |
| "name":"sdoh_roberta_cui", | |
| "version":"0.0.0", | |
| "description":"CNN based Social determinants of health NER with a fine-grained window context bag-of-words classifier and a standard ontology extension interface (SNOMED_CT and CUI)", | |
| "author":"Dima Lituiev", | |
| "email":"d.lituiev@gmail.com", | |
| "url":"", | |
| "license":"", | |
| "spacy_version":">=3.2.1,<3.3.0", | |
| "spacy_git_version":"800737b41", | |
| "vectors":{ | |
| "width":0, | |
| "vectors":0, | |
| "keys":0, | |
| "name":null | |
| }, | |
| "labels":{ | |
| "transformer":[ | |
| ], | |
| "ner":[ | |
| "Anxiety: GAD", | |
| "Anxiety: Generalized Anxiety Disorder", | |
| "Anxiety: Level of anxiety", | |
| "Anxiety: NA", | |
| "Anxiety: Signs and symptoms of anxiety", | |
| "Anxiety: family hx: Anxiety state", | |
| "Anxiety: hx of anxiety state", | |
| "Depression: Family hx: Depression", | |
| "Depression: Major depressive disorder", | |
| "Depression: NA", | |
| "Depression: PHQ", | |
| "Depression: Symptoms of depression", | |
| "Depression: hx of Depression", | |
| "Financial_strain: Financial problem", | |
| "Financial_strain: Financially secure", | |
| "Financial_strain: NA", | |
| "Financial_strain: Unable to afford medication", | |
| "Food: Able to obtain food", | |
| "Food: Fruit and vegetable intake", | |
| "Food: NA", | |
| "Housing: Homeless", | |
| "Housing: Housing unsuited to needs", | |
| "Housing: Marginally housed", | |
| "Housing: NA", | |
| "Housing: Stably housed", | |
| "Housing: Subsidized housing", | |
| "Housing: lives in facility", | |
| "Insurance_status: Inadequate healthcare resources", | |
| "Insurance_status: NA", | |
| "Marital_or_partnership_status: Divorced", | |
| "Marital_or_partnership_status: Engaged to be married", | |
| "Marital_or_partnership_status: Married", | |
| "Marital_or_partnership_status: NA", | |
| "Marital_or_partnership_status: Partner", | |
| "Marital_or_partnership_status: Partner relationship problem", | |
| "Marital_or_partnership_status: Separated", | |
| "Marital_or_partnership_status: Single person", | |
| "Marital_or_partnership_status: Widowed", | |
| "Social_isolation: At risk for loneliness", | |
| "Social_isolation: Has social support", | |
| "Social_isolation: Lives alone", | |
| "Social_isolation: Lives with", | |
| "Social_isolation: NA", | |
| "Social_isolation: Personal relationship breakdown", | |
| "Social_isolation: Social Isolation", | |
| "Transportation: Has access to a car", | |
| "Transportation: Has access to public transport vehicle", | |
| "Transportation: NA", | |
| "Transportation: Transportation problems", | |
| "pain_and_disability: NA", | |
| "pain_and_disability: Pain intensity rating scale, current", | |
| "pain_and_disability: Pain intensity rating scale, worst" | |
| ] | |
| }, | |
| "pipeline":[ | |
| "transformer", | |
| "ner", | |
| "sdoh_cui" | |
| ], | |
| "components":[ | |
| "transformer", | |
| "ner", | |
| "sdoh_cui" | |
| ], | |
| "disabled":[ | |
| ], | |
| "performance":{ | |
| "ents_f":0.7764060357, | |
| "ents_p":0.8016997167, | |
| "ents_r":0.7526595745, | |
| "ents_per_type":{ | |
| "Marital_or_partnership_status: Divorced":{ | |
| "p":0.92, | |
| "r":0.7666666667, | |
| "f":0.8363636364 | |
| }, | |
| "Marital_or_partnership_status: Single person":{ | |
| "p":0.9850746269, | |
| "r":1.0, | |
| "f":0.992481203 | |
| }, | |
| "Social_isolation: Lives alone":{ | |
| "p":0.875, | |
| "r":0.7777777778, | |
| "f":0.8235294118 | |
| }, | |
| "Social_isolation: Has social support":{ | |
| "p":0.5740740741, | |
| "r":0.4246575342, | |
| "f":0.4881889764 | |
| }, | |
| "Housing: Stably housed":{ | |
| "p":0.6612903226, | |
| "r":0.6949152542, | |
| "f":0.6776859504 | |
| }, | |
| "pain_and_disability: NA":{ | |
| "p":0.8622754491, | |
| "r":0.9536423841, | |
| "f":0.9056603774 | |
| }, | |
| "pain_and_disability: Pain intensity rating scale, current":{ | |
| "p":1.0, | |
| "r":0.7586206897, | |
| "f":0.862745098 | |
| }, | |
| "pain_and_disability: Pain intensity rating scale, worst":{ | |
| "p":0.7586206897, | |
| "r":0.6285714286, | |
| "f":0.6875 | |
| }, | |
| "Marital_or_partnership_status: Married":{ | |
| "p":0.9136690647, | |
| "r":0.9007092199, | |
| "f":0.9071428571 | |
| }, | |
| "Anxiety: hx of anxiety state":{ | |
| "p":0.8305084746, | |
| "r":0.8305084746, | |
| "f":0.8305084746 | |
| }, | |
| "Depression: hx of Depression":{ | |
| "p":0.8591549296, | |
| "r":0.7721518987, | |
| "f":0.8133333333 | |
| }, | |
| "Marital_or_partnership_status: Partner":{ | |
| "p":0.95, | |
| "r":0.9047619048, | |
| "f":0.9268292683 | |
| }, | |
| "Social_isolation: Lives with":{ | |
| "p":0.8409090909, | |
| "r":0.880952381, | |
| "f":0.8604651163 | |
| }, | |
| "Depression: Major depressive disorder":{ | |
| "p":0.4, | |
| "r":0.2, | |
| "f":0.2666666667 | |
| }, | |
| "Depression: Symptoms of depression":{ | |
| "p":0.6447368421, | |
| "r":0.7903225806, | |
| "f":0.7101449275 | |
| }, | |
| "Anxiety: Signs and symptoms of anxiety":{ | |
| "p":0.72, | |
| "r":0.8571428571, | |
| "f":0.7826086957 | |
| }, | |
| "Depression: NA":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Marital_or_partnership_status: Separated":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Anxiety: NA":{ | |
| "p":0.6666666667, | |
| "r":0.9333333333, | |
| "f":0.7777777778 | |
| }, | |
| "Social_isolation: NA":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Anxiety: family hx: Anxiety state":{ | |
| "p":1.0, | |
| "r":1.0, | |
| "f":1.0 | |
| }, | |
| "Depression: Family hx: Depression":{ | |
| "p":0.875, | |
| "r":0.7777777778, | |
| "f":0.8235294118 | |
| }, | |
| "Marital_or_partnership_status: Widowed":{ | |
| "p":0.7428571429, | |
| "r":0.7222222222, | |
| "f":0.7323943662 | |
| }, | |
| "Food: Provision of food":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Anxiety: Generalized Anxiety Disorder":{ | |
| "p":0.2, | |
| "r":0.25, | |
| "f":0.2222222222 | |
| }, | |
| "Financial_strain: NA":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Insurance_status: Inadequate healthcare resources":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Insurance_status: NA":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Marital_or_partnership_status: NA":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Transportation: Has access to a car":{ | |
| "p":0.5, | |
| "r":0.2222222222, | |
| "f":0.3076923077 | |
| }, | |
| "Anxiety: GAD-7":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Depression: PHQ-9":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Financial_strain: Financial problem":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Housing: Housing unsuited to needs":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Housing: Subsidized housing":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Social_isolation: At risk for loneliness":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Marital_or_partnership_status: Engaged to be married":{ | |
| "p":1.0, | |
| "r":0.5, | |
| "f":0.6666666667 | |
| }, | |
| "Financial_strain: Unable to afford medication":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Transportation: Has access to public transport vehicle":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Housing: lives in facility":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Transportation: Transportation problems":{ | |
| "p":1.0, | |
| "r":1.0, | |
| "f":1.0 | |
| }, | |
| "Social_isolation: Social Isolation":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| }, | |
| "Housing: NA":{ | |
| "p":0.0, | |
| "r":0.0, | |
| "f":0.0 | |
| } | |
| }, | |
| "transformer_loss":377081.381025166, | |
| "ner_loss":14440.8680006622 | |
| }, | |
| "requirements":[ | |
| "spacy-transformers>=1.1.4,<1.2.0" | |
| ] | |
| } |