zeyugao commited on
Commit
be2a098
1 Parent(s): 1742eb8

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +5 -2
README.md CHANGED
@@ -4,11 +4,14 @@ license: cc-by-4.0
4
 
5
  **Pixel Annotations of TCGA-RCC and TCGA-LU**: are saved as PNG files, the region marked by white/red/green is the cancer region, and marked by blue is the abandoned region, which also can be regarded as background.
6
 
7
- The PNG file name is the case_id of each WSI. Match the original TCGA name with dataset_csv files in our GitHub repo https://github.com/ZeyuGaoAi/SMMILe.
8
 
9
  Each annotation mask's size equals level 3 of the corresponding WSI.
10
 
11
  **Patch Annotations of TCGA-STAD**: are saved as CSV files, each raw indicates a patch with corresponding coordinates, sizes, and annotated labels.
12
 
13
- The fine-grained subtype labels of WSIs can be obtained by counting whether patches of certain subtypes appear in each WSI.
14
 
 
 
 
 
4
 
5
  **Pixel Annotations of TCGA-RCC and TCGA-LU**: are saved as PNG files, the region marked by white/red/green is the cancer region, and marked by blue is the abandoned region, which also can be regarded as background.
6
 
7
+ The PNG file name is the case_id of each WSI. Match the original TCGA name with dataset_csv files in [our GitHub repo](https://github.com/ZeyuGaoAi/SMMILe/tree/main/single/dataset_csv).
8
 
9
  Each annotation mask's size equals level 3 of the corresponding WSI.
10
 
11
  **Patch Annotations of TCGA-STAD**: are saved as CSV files, each raw indicates a patch with corresponding coordinates, sizes, and annotated labels.
12
 
13
+ Both coordinates and sizes are obtained at the maximum magnification of the corresponding SVS file.
14
 
15
+ The CSV file name is the case_id of each WSI. Match the original TCGA name with dataset_csv files in [our GitHub repo](https://github.com/ZeyuGaoAi/SMMILe/blob/main/multi/dataset_csv/gastric_subtyping_npy.csv).
16
+
17
+ The fine-grained subtype labels of WSIs can be obtained by counting whether patches of certain subtypes appear in each WSI.