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  1. .gitattributes +1 -0
  2. .gitignore +2 -0
  3. data/INAT/all_data/main.ipynb +188 -0
  4. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/060482cf-1f27-4f80-8b95-b3db94e2807e.jpg +3 -0
  5. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/08eaeaa7-0408-414f-8557-73585a0bd74d.jpg +3 -0
  6. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/0eb90b26-cfe0-404d-86a3-30456261dc7d.jpg +3 -0
  7. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/18df6e84-bc25-478a-ab17-5d3641ae2027.jpg +3 -0
  8. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/19f99e76-8816-4ffb-aff8-7ae877d7c71e.jpg +3 -0
  9. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/1acb6c5a-318c-4889-84e7-dade903c8fd1.jpg +3 -0
  10. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/1ca3a7c3-6eba-43ed-b012-e99de3663a77.jpg +3 -0
  11. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/1e7b8d37-9f79-406f-b6e1-37cd4a57f3c2.jpg +3 -0
  12. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/207f2b17-b31b-449d-a486-b8db21de1a8c.jpg +3 -0
  13. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/21c6654c-2fe8-4fd8-8b64-789cbd34d86c.jpg +3 -0
  14. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/2734cd52-e913-42c0-8b85-80290a7a3610.jpg +3 -0
  15. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/3643c180-3304-4e83-878c-9e32ef20a0e9.jpg +3 -0
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  17. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/4fd71847-4902-429d-8cf8-d0b157524794.jpg +3 -0
  18. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/7047a6b2-cc2f-4e24-acf2-3178c2393140.jpg +3 -0
  19. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/92f09acb-c956-4798-ac37-51b3c1e9814e.jpg +3 -0
  20. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/9698c457-82dd-4c1f-9c38-88c4386de48e.jpg +3 -0
  21. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/96bef403-a5fa-45c6-b4cd-5c52a104c1f7.jpg +3 -0
  22. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/9ad42841-2503-4d08-885e-ddc1388771fd.jpg +3 -0
  23. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/a29ded47-cd33-4b0f-897a-55349cea731f.jpg +3 -0
  24. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/a7f16a85-a0a2-4baa-8325-d304d1ff48b8.jpg +3 -0
  25. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/b4d2718c-e276-4c6a-b925-36b944b78bc2.jpg +3 -0
  26. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/c02255fb-b0a1-4d90-b8cf-2d5d23adfc56.jpg +3 -0
  27. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/c38b299c-6ec4-4654-bce4-56996435f39c.jpg +3 -0
  28. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/df1b0ea6-1717-4ad0-a729-e80b38394a63.jpg +3 -0
  29. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/e0373e0f-f562-4609-8bd7-03b8e8bf6220.jpg +3 -0
  30. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/e551a333-8cde-4b2c-b94c-ff3c54b113d0.jpg +3 -0
  31. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/ed5221a3-cdb3-444e-af29-6f733194c8df.jpg +3 -0
  32. data/INAT/all_data/test/03124_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_albonotatus/ef385b0a-f929-4812-8a77-e1d7f4933cf3.jpg +3 -0
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  34. data/INAT/all_data/test/03129_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_lineatus/01257323-604a-4113-8550-c008a76a16b9.jpg +3 -0
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  41. data/INAT/all_data/test/03129_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_lineatus/2e7de124-31f6-4291-b22b-5eb52f9b4491.jpg +3 -0
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  45. data/INAT/all_data/test/03129_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_lineatus/435aba2a-4f47-456d-a66b-c011c2c65149.jpg +3 -0
  46. data/INAT/all_data/test/03129_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_lineatus/43f4cbd1-5f90-4f85-b585-e663f52c25a7.jpg +3 -0
  47. data/INAT/all_data/test/03129_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_lineatus/46413144-a9ce-4352-b409-0107e5795246.jpg +3 -0
  48. data/INAT/all_data/test/03129_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_lineatus/56d3a3a3-cd44-4bd5-92ab-be8a969ad396.jpg +3 -0
  49. data/INAT/all_data/test/03129_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_lineatus/5a3d9ee9-f313-402a-bb92-8533ef73fba3.jpg +3 -0
  50. data/INAT/all_data/test/03129_Animalia_Chordata_Aves_Accipitriformes_Accipitridae_Buteo_lineatus/66320f09-a969-43e2-8f5c-dc139e7b1e4b.jpg +3 -0
.gitattributes CHANGED
@@ -56,3 +56,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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  # Video files - compressed
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  *.mp4 filter=lfs diff=lfs merge=lfs -text
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  *.webm filter=lfs diff=lfs merge=lfs -text
 
 
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  # Video files - compressed
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  *.mp4 filter=lfs diff=lfs merge=lfs -text
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  *.webm filter=lfs diff=lfs merge=lfs -text
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+ *.txt filter=lfs diff=lfs merge=lfs -text
.gitignore ADDED
@@ -0,0 +1,2 @@
 
 
 
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+ data/*/synthetic/*
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+ data/*/arch_synthetic/*
data/INAT/all_data/main.ipynb ADDED
@@ -0,0 +1,188 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ {
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+ "cells": [
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+ {
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+ "cell_type": "code",
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+ "execution_count": 25,
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+ "metadata": {},
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+ "outputs": [],
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+ "source": [
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+ "import os\n",
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+ "import json\n",
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+ "train_dir = \"/home/bingxuan/VDA/data/INAT/all_data/train/\"\n",
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+ "test_dir = \"/home/bingxuan/VDA/data/INAT/all_data/test/\"\n",
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+ "working_dir = \"/home/bingxuan/VDA/data/INAT/subset_6\"\n",
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+ "\n",
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+ "configs_path = working_dir + \"/config.json\"\n",
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+ "with open(configs_path, \"r\") as f:\n",
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+ " configs = json.load(f)\n",
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+ " \n",
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+ "paths = configs[\"pairs\"]\n",
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+ "\n",
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+ "# for pair in paths:\n",
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+ "# path_1 = train_dir + pair[\"ground_truth_full_name\"]\n",
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+ "# if not os.path.exists(path_1):\n",
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+ "# print(f\"ERROR: {path_1} does not exist\")\n",
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+ "# print(f\"{path_1}: {len(os.listdir(path_1))}\")\n",
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+ " \n",
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+ "# path_4 = test_dir + pair[\"ground_truth_full_name\"]\n",
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+ "# if not os.path.exists(path_4):\n",
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+ "# print(f\"ERROR: {path_4} does not exist\")\n",
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+ "# print(f\"{path_4}: {len(os.listdir(path_4))}\")\n",
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+ " \n",
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+ "# path_2 = train_dir + pair[\"confusing_class_full_name\"]\n",
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+ "# if not os.path.exists(path_2):\n",
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+ "# print(f\"ERROR: {path_2} does not exist\")\n",
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+ "# print(f\"{path_2}: {len(os.listdir(path_2))}\")\n",
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+ " \n",
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+ "# path_3 = test_dir + pair[\"confusing_class_full_name\"]\n",
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+ "# if not os.path.exists(path_3):\n",
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+ "# print(f\"ERROR: {path_3} does not exist\")\n",
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+ "# print(f\"{path_3}: {len(os.listdir(path_3))}\")\n",
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+ " "
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+ ]
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+ },
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+ {
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+ "cell_type": "code",
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+ "execution_count": 26,
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+ "metadata": {},
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+ "outputs": [
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+ {
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+ "name": "stdout",
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+ "output_type": "stream",
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+ "text": [
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+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04440_Animalia_Chordata_Aves_Piciformes_Picidae_Dryobates_minor to /home/bingxuan/VDA/data/INAT/subset_6/train/04440_Animalia_Chordata_Aves_Piciformes_Picidae_Dryobates_minor\n",
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+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04455_Animalia_Chordata_Aves_Piciformes_Picidae_Melanerpes_lewis to /home/bingxuan/VDA/data/INAT/subset_6/train/04455_Animalia_Chordata_Aves_Piciformes_Picidae_Melanerpes_lewis\n",
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+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04455_Animalia_Chordata_Aves_Piciformes_Picidae_Melanerpes_lewis to /home/bingxuan/VDA/data/INAT/subset_6/val/04455_Animalia_Chordata_Aves_Piciformes_Picidae_Melanerpes_lewis\n",
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+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04440_Animalia_Chordata_Aves_Piciformes_Picidae_Dryobates_minor to /home/bingxuan/VDA/data/INAT/subset_6/val/04440_Animalia_Chordata_Aves_Piciformes_Picidae_Dryobates_minor\n",
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+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04243_Animalia_Chordata_Aves_Passeriformes_Thraupidae_Tersina_viridis to /home/bingxuan/VDA/data/INAT/subset_6/train/04243_Animalia_Chordata_Aves_Passeriformes_Thraupidae_Tersina_viridis\n",
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+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04373_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_caerulea to /home/bingxuan/VDA/data/INAT/subset_6/train/04373_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_caerulea\n",
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+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04373_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_caerulea to /home/bingxuan/VDA/data/INAT/subset_6/val/04373_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_caerulea\n",
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+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04243_Animalia_Chordata_Aves_Passeriformes_Thraupidae_Tersina_viridis to /home/bingxuan/VDA/data/INAT/subset_6/val/04243_Animalia_Chordata_Aves_Passeriformes_Thraupidae_Tersina_viridis\n",
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+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04074_Animalia_Chordata_Aves_Passeriformes_Parulidae_Setophaga_fusca to /home/bingxuan/VDA/data/INAT/subset_6/train/04074_Animalia_Chordata_Aves_Passeriformes_Parulidae_Setophaga_fusca\n",
62
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04074_Animalia_Chordata_Aves_Passeriformes_Parulidae_Setophaga_fusca to /home/bingxuan/VDA/data/INAT/subset_6/val/04074_Animalia_Chordata_Aves_Passeriformes_Parulidae_Setophaga_fusca\n",
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+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04377_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_sacra to /home/bingxuan/VDA/data/INAT/subset_6/train/04377_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_sacra\n",
64
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04377_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_sacra to /home/bingxuan/VDA/data/INAT/subset_6/val/04377_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_sacra\n",
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+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04570_Animalia_Chordata_Aves_Suliformes_Phalacrocoracidae_Microcarbo_melanoleucos to /home/bingxuan/VDA/data/INAT/subset_6/train/04570_Animalia_Chordata_Aves_Suliformes_Phalacrocoracidae_Microcarbo_melanoleucos\n",
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+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04570_Animalia_Chordata_Aves_Suliformes_Phalacrocoracidae_Microcarbo_melanoleucos to /home/bingxuan/VDA/data/INAT/subset_6/val/04570_Animalia_Chordata_Aves_Suliformes_Phalacrocoracidae_Microcarbo_melanoleucos\n",
67
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04837_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_minimus to /home/bingxuan/VDA/data/INAT/subset_6/train/04837_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_minimus\n",
68
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04836_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_merriami to /home/bingxuan/VDA/data/INAT/subset_6/train/04836_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_merriami\n",
69
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04836_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_merriami to /home/bingxuan/VDA/data/INAT/subset_6/val/04836_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_merriami\n",
70
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04837_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_minimus to /home/bingxuan/VDA/data/INAT/subset_6/val/04837_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_minimus\n",
71
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04741_Animalia_Chordata_Mammalia_Diprotodontia_Phalangeridae_Trichosurus_vulpecula to /home/bingxuan/VDA/data/INAT/subset_6/train/04741_Animalia_Chordata_Mammalia_Diprotodontia_Phalangeridae_Trichosurus_vulpecula\n",
72
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04716_Animalia_Chordata_Mammalia_Carnivora_Procyonidae_Bassariscus_astutus to /home/bingxuan/VDA/data/INAT/subset_6/train/04716_Animalia_Chordata_Mammalia_Carnivora_Procyonidae_Bassariscus_astutus\n",
73
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04716_Animalia_Chordata_Mammalia_Carnivora_Procyonidae_Bassariscus_astutus to /home/bingxuan/VDA/data/INAT/subset_6/val/04716_Animalia_Chordata_Mammalia_Carnivora_Procyonidae_Bassariscus_astutus\n",
74
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04741_Animalia_Chordata_Mammalia_Diprotodontia_Phalangeridae_Trichosurus_vulpecula to /home/bingxuan/VDA/data/INAT/subset_6/val/04741_Animalia_Chordata_Mammalia_Diprotodontia_Phalangeridae_Trichosurus_vulpecula\n",
75
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04780_Animalia_Chordata_Mammalia_Primates_Cebidae_Callithrix_penicillata to /home/bingxuan/VDA/data/INAT/subset_6/train/04780_Animalia_Chordata_Mammalia_Primates_Cebidae_Callithrix_penicillata\n",
76
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04780_Animalia_Chordata_Mammalia_Primates_Cebidae_Callithrix_penicillata to /home/bingxuan/VDA/data/INAT/subset_6/val/04780_Animalia_Chordata_Mammalia_Primates_Cebidae_Callithrix_penicillata\n",
77
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04821_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Callospermophilus_lateralis to /home/bingxuan/VDA/data/INAT/subset_6/train/04821_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Callospermophilus_lateralis\n",
78
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04821_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Callospermophilus_lateralis to /home/bingxuan/VDA/data/INAT/subset_6/val/04821_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Callospermophilus_lateralis\n",
79
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04746_Animalia_Chordata_Mammalia_Eulipotyphla_Erinaceidae_Erinaceus_roumanicus to /home/bingxuan/VDA/data/INAT/subset_6/train/04746_Animalia_Chordata_Mammalia_Eulipotyphla_Erinaceidae_Erinaceus_roumanicus\n",
80
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04811_Animalia_Chordata_Mammalia_Rodentia_Hystricidae_Hystrix_africaeaustralis to /home/bingxuan/VDA/data/INAT/subset_6/train/04811_Animalia_Chordata_Mammalia_Rodentia_Hystricidae_Hystrix_africaeaustralis\n",
81
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04811_Animalia_Chordata_Mammalia_Rodentia_Hystricidae_Hystrix_africaeaustralis to /home/bingxuan/VDA/data/INAT/subset_6/val/04811_Animalia_Chordata_Mammalia_Rodentia_Hystricidae_Hystrix_africaeaustralis\n",
82
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04746_Animalia_Chordata_Mammalia_Eulipotyphla_Erinaceidae_Erinaceus_roumanicus to /home/bingxuan/VDA/data/INAT/subset_6/val/04746_Animalia_Chordata_Mammalia_Eulipotyphla_Erinaceidae_Erinaceus_roumanicus\n",
83
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04845_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Sciurus_granatensis to /home/bingxuan/VDA/data/INAT/subset_6/train/04845_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Sciurus_granatensis\n",
84
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04845_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Sciurus_granatensis to /home/bingxuan/VDA/data/INAT/subset_6/val/04845_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Sciurus_granatensis\n",
85
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04802_Animalia_Chordata_Mammalia_Rodentia_Cricetidae_Neotoma_fuscipes to /home/bingxuan/VDA/data/INAT/subset_6/train/04802_Animalia_Chordata_Mammalia_Rodentia_Cricetidae_Neotoma_fuscipes\n",
86
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04794_Animalia_Chordata_Mammalia_Rodentia_Castoridae_Castor_canadensis to /home/bingxuan/VDA/data/INAT/subset_6/train/04794_Animalia_Chordata_Mammalia_Rodentia_Castoridae_Castor_canadensis\n",
87
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04794_Animalia_Chordata_Mammalia_Rodentia_Castoridae_Castor_canadensis to /home/bingxuan/VDA/data/INAT/subset_6/val/04794_Animalia_Chordata_Mammalia_Rodentia_Castoridae_Castor_canadensis\n",
88
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04802_Animalia_Chordata_Mammalia_Rodentia_Cricetidae_Neotoma_fuscipes to /home/bingxuan/VDA/data/INAT/subset_6/val/04802_Animalia_Chordata_Mammalia_Rodentia_Cricetidae_Neotoma_fuscipes\n",
89
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04825_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Funambulus_palmarum to /home/bingxuan/VDA/data/INAT/subset_6/train/04825_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Funambulus_palmarum\n",
90
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04857_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Xerospermophilus_tereticaudus to /home/bingxuan/VDA/data/INAT/subset_6/train/04857_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Xerospermophilus_tereticaudus\n",
91
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04857_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Xerospermophilus_tereticaudus to /home/bingxuan/VDA/data/INAT/subset_6/val/04857_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Xerospermophilus_tereticaudus\n",
92
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04825_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Funambulus_palmarum to /home/bingxuan/VDA/data/INAT/subset_6/val/04825_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Funambulus_palmarum\n",
93
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04791_Animalia_Chordata_Mammalia_Primates_Cercopithecidae_Trachypithecus_obscurus to /home/bingxuan/VDA/data/INAT/subset_6/train/04791_Animalia_Chordata_Mammalia_Primates_Cercopithecidae_Trachypithecus_obscurus\n",
94
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04779_Animalia_Chordata_Mammalia_Primates_Atelidae_Ateles_geoffroyi to /home/bingxuan/VDA/data/INAT/subset_6/train/04779_Animalia_Chordata_Mammalia_Primates_Atelidae_Ateles_geoffroyi\n",
95
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04779_Animalia_Chordata_Mammalia_Primates_Atelidae_Ateles_geoffroyi to /home/bingxuan/VDA/data/INAT/subset_6/val/04779_Animalia_Chordata_Mammalia_Primates_Atelidae_Ateles_geoffroyi\n",
96
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04791_Animalia_Chordata_Mammalia_Primates_Cercopithecidae_Trachypithecus_obscurus to /home/bingxuan/VDA/data/INAT/subset_6/val/04791_Animalia_Chordata_Mammalia_Primates_Cercopithecidae_Trachypithecus_obscurus\n",
97
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04696_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Martes_foina to /home/bingxuan/VDA/data/INAT/subset_6/train/04696_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Martes_foina\n",
98
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04702_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Pekania_pennanti to /home/bingxuan/VDA/data/INAT/subset_6/train/04702_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Pekania_pennanti\n",
99
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04702_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Pekania_pennanti to /home/bingxuan/VDA/data/INAT/subset_6/val/04702_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Pekania_pennanti\n",
100
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04696_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Martes_foina to /home/bingxuan/VDA/data/INAT/subset_6/val/04696_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Martes_foina\n",
101
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04667_Animalia_Chordata_Mammalia_Artiodactyla_Tayassuidae_Pecari_tajacu to /home/bingxuan/VDA/data/INAT/subset_6/train/04667_Animalia_Chordata_Mammalia_Artiodactyla_Tayassuidae_Pecari_tajacu\n",
102
+ "copied /home/bingxuan/VDA/data/INAT/all_data/train/04731_Animalia_Chordata_Mammalia_Cingulata_Dasypodidae_Dasypus_novemcinctus to /home/bingxuan/VDA/data/INAT/subset_6/train/04731_Animalia_Chordata_Mammalia_Cingulata_Dasypodidae_Dasypus_novemcinctus\n",
103
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04731_Animalia_Chordata_Mammalia_Cingulata_Dasypodidae_Dasypus_novemcinctus to /home/bingxuan/VDA/data/INAT/subset_6/val/04731_Animalia_Chordata_Mammalia_Cingulata_Dasypodidae_Dasypus_novemcinctus\n",
104
+ "copied /home/bingxuan/VDA/data/INAT/all_data/test/04667_Animalia_Chordata_Mammalia_Artiodactyla_Tayassuidae_Pecari_tajacu to /home/bingxuan/VDA/data/INAT/subset_6/val/04667_Animalia_Chordata_Mammalia_Artiodactyla_Tayassuidae_Pecari_tajacu\n"
105
+ ]
106
+ }
107
+ ],
108
+ "source": [
109
+ "# cp train and test data to working dir\n",
110
+ "import shutil\n",
111
+ "\n",
112
+ "for pair in paths:\n",
113
+ " path_1 = train_dir + pair[\"ground_truth_full_name\"]\n",
114
+ " path_2 = train_dir + pair[\"confusing_class_full_name\"]\n",
115
+ " path_3 = test_dir + pair[\"confusing_class_full_name\"]\n",
116
+ " path_4 = test_dir + pair[\"ground_truth_full_name\"]\n",
117
+ " \n",
118
+ " if not os.path.exists(working_dir + '/train/' + pair['ground_truth_full_name']):\n",
119
+ " shutil.copytree(path_1, working_dir + '/train/' + pair['ground_truth_full_name'])\n",
120
+ " print(f\"copied {path_1} to {working_dir + '/train/' + pair['ground_truth_full_name']}\")\n",
121
+ " if not os.path.exists(working_dir + '/train/' + pair['confusing_class_full_name']):\n",
122
+ " shutil.copytree(path_2, working_dir + '/train/' + pair['confusing_class_full_name'])\n",
123
+ " print(f\"copied {path_2} to {working_dir + '/train/' + pair['confusing_class_full_name']}\")\n",
124
+ " if not os.path.exists(working_dir + '/val/' + pair['confusing_class_full_name']): \n",
125
+ " shutil.copytree(path_3, working_dir + '/val/' + pair['confusing_class_full_name'])\n",
126
+ " print(f\"copied {path_3} to {working_dir + '/val/' + pair['confusing_class_full_name']}\")\n",
127
+ " if not os.path.exists(working_dir + '/val/' + pair['ground_truth_full_name']):\n",
128
+ " shutil.copytree(path_4, working_dir + '/val/' + pair['ground_truth_full_name'])\n",
129
+ " print(f\"copied {path_4} to {working_dir + '/val/' + pair['ground_truth_full_name']}\")"
130
+ ]
131
+ },
132
+ {
133
+ "cell_type": "code",
134
+ "execution_count": 27,
135
+ "metadata": {},
136
+ "outputs": [],
137
+ "source": [
138
+ "# import random\n",
139
+ "# import shutil\n",
140
+ "\n",
141
+ "# train_num_imgs = 70\n",
142
+ "# val_num_imgs = 30\n",
143
+ "\n",
144
+ "# for pair in paths:\n",
145
+ "# path_1 = home_dir + pair[\"ground_truth_full_name\"]\n",
146
+ "# os.makedirs(working_dir + \"/train\" + pair[\"ground_truth_full_name\"], exist_ok=True)\n",
147
+ "# os.makedirs(working_dir + \"/val\" + pair[\"ground_truth_full_name\"], exist_ok=True)\n",
148
+ "# images = os.listdir(path_1)\n",
149
+ "# random.shuffle(images)\n",
150
+ "# for img in images[:train_num_imgs]:\n",
151
+ "# shutil.copy(path_1 + \"/\" + img, working_dir + \"/train\" + pair[\"ground_truth_full_name\"] + \"/\" + img)\n",
152
+ "# for img in images[train_num_imgs:train_num_imgs+val_num_imgs]:\n",
153
+ "# shutil.copy(path_1 + \"/\" + img, working_dir + \"/val\" + pair[\"ground_truth_full_name\"] + \"/\" + img)\n",
154
+ "\n",
155
+ "# path_2 = home_dir + pair[\"confusing_class_full_name\"]\n",
156
+ "# os.makedirs(working_dir + \"/train\" + pair[\"confusing_class_full_name\"], exist_ok=True)\n",
157
+ "# os.makedirs(working_dir + \"/val\" + pair[\"confusing_class_full_name\"], exist_ok=True)\n",
158
+ "# images = os.listdir(path_2)\n",
159
+ "# random.shuffle(images)\n",
160
+ "# for img in images[:train_num_imgs]:\n",
161
+ "# shutil.copy(path_2 + \"/\" + img, working_dir + \"/train\" + pair[\"confusing_class_full_name\"] + \"/\" + img)\n",
162
+ "# for img in images[train_num_imgs:train_num_imgs+val_num_imgs]:\n",
163
+ "# shutil.copy(path_2 + \"/\" + img, working_dir + \"/val\" + pair[\"confusing_class_full_name\"] + \"/\" + img)"
164
+ ]
165
+ }
166
+ ],
167
+ "metadata": {
168
+ "kernelspec": {
169
+ "display_name": "visual_data_aug",
170
+ "language": "python",
171
+ "name": "python3"
172
+ },
173
+ "language_info": {
174
+ "codemirror_mode": {
175
+ "name": "ipython",
176
+ "version": 3
177
+ },
178
+ "file_extension": ".py",
179
+ "mimetype": "text/x-python",
180
+ "name": "python",
181
+ "nbconvert_exporter": "python",
182
+ "pygments_lexer": "ipython3",
183
+ "version": "3.10.14"
184
+ }
185
+ },
186
+ "nbformat": 4,
187
+ "nbformat_minor": 2
188
+ }
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Git LFS Details

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Git LFS Details

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Git LFS Details

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