wanyu/IteraTeR_v2 huggingface dataset:
Original:  They strongly suggest that nonlinear phenomena may play an important role in enzyme function, allowing for energy storage and transfer during the catalytic process , as proposed by Davydov thirty years ago .
Revised:  They strongly suggest that nonlinear phenomena may play an important role in enzyme function, allowing for energy storage during the catalytic process , as proposed by Davydov thirty years ago .
Edit intent: clarity
Original:  They strongly suggest that nonlinear phenomena may play an important role in enzyme function, allowing for energy storage and transfer during the catalytic process , as proposed by Davydov thirty years ago .
Revised:  They strongly suggest that nonlinear phenomena may play an important role in enzyme function, allowing for energy storage and transfer during the catalytic process .
Edit intent: coherence
Original: The paper examines the cointegration of the daily electric power system load and the weather by a field intelligent system.
Revised: The paper examines the cointegration of the daily electric power systen load and the weather by a field intelligent system.
Edit intent: fluency
Original: The serial interval may be defined as the time between the onset of symptoms in an infectious person and the onset of symptoms in a person he or she infects.
Revised: The generation interval is the time between the onset of symptoms in an infectious person and the onset of symptoms in a person he or she infects.
Edit intent: clarity
Original:  In this paper, we specify a general  SIR epidemic model and prove that the mean serial interval must contract when susceptible persons are at risk of multiple infectious contacts .
Revised:  In this paper, we specify a general SIR epidemic model and prove that the mean generation interval decreases when susceptible persons are at risk of multiple infectious contacts .
Edit intent: clarity
Original:  In an epidemic, the mean serial interval contracts as the prevalence of infection increases.
Revised:  In an epidemic, the mean generation interval contracts as the prevalence of infection increases.
Edit intent: clarity
Original:  We illustrate two mechanisms through which serial interval contraction can occur: In global competition among infectious contacts, risk of multiple infectious contacts results from a high global prevalence of infection .
Revised:  When there is rapid transmission within clusters of contacts, generation interval contraction can occur: In global competition among infectious contacts, risk of multiple infectious contacts results from a high global prevalence of infection .
Edit intent: clarity
Original:  We illustrate two mechanisms through which serial interval contraction can occur: In global competition among infectious contacts, risk of multiple infectious contacts results from a high global prevalence of infection .
Revised:  We illustrate two mechanisms through which serial interval contraction can be caused by a high local prevalence of infection .
Edit intent: clarity
Original:  In local competition among infectious contacts, clustering of contacts places susceptible persons at risk of multiple infectious contacts even when the global prevalence of infection is low.
Revised:  In local competition among infectious contacts, clustering of contacts places susceptible persons at risk of multiple infectious contacts even when the global prevalence is low.
Edit intent: fluency
Original:  The intuition behind this is that when a susceptible person has multiple potential infectors, there is a race to infect him or her in which only the first infectious contact leads to infection.
Revised:  The intuition behind this is that when a susceptible person has multiple potential infectors, there is a ``race'' to infect him or her in which only the first infectious contact leads to infection.
Edit intent: fluency
Original:  We call these global competition and local competition among potential infectors and illustrate each with simulations .
Revised:  We call this local competition among potential infectors and illustrate each with simulations .
Edit intent: clarity
Original:  We call these global competition and local competition among potential infectors and illustrate each with simulations .
Revised:  We call these global competition and local competition among potential infectors . Using simulations, we illustrate both types of competition .
Edit intent: clarity
Original:  This note sketches out some answers and illustrates the main ideas behind this probabilistic approach to biological pattern discovery.
Revised:  This note sketches out some answers and illustrates the main ideas behind the statistical approach to biological pattern discovery.
Edit intent: clarity
Original:  Here, a self-consistent integral equation formalism for ligand rebinding  in conjunction with Monte Carlo simulations are employed to further investigate the effects of multiple, equivalent binding sites on shaping biological responses.
Revised:  Here, a self-consistent integral equation formalism for ligand rebinding , in conjunction with Monte Carlo simulations are employed to further investigate the effects of multiple, equivalent binding sites on shaping biological responses.
Edit intent: fluency
Original:  Here, a self-consistent integral equation formalism for ligand rebinding  in conjunction with Monte Carlo simulations are employed to further investigate the effects of multiple, equivalent binding sites on shaping biological responses.
Revised:  Here, a self-consistent integral equation formalism for ligand rebinding in conjunction with Monte Carlo simulations , is employed to further investigate the effects of multiple, equivalent binding sites on shaping biological responses.
Edit intent: fluency
Original: We studied the dynamical response of a nanomechanical resonator to biomolecular (e.g. DNA) adsorption on a resonator's surface by using a theoretical model that considers the Hamiltonian H composed of elastic bending energy of a resonator and the potential energy for biomolecular interactions.
Revised: We studied the dynamical response of a nanomechanical resonator to biomolecular (e.g. DNA) adsorptions on a resonator's surface by using a theoretical model that considers the Hamiltonian H composed of elastic bending energy of a resonator and the potential energy for biomolecular interactions.
Edit intent: fluency
Original: We studied the dynamical response of a nanomechanical resonator to biomolecular (e.g. DNA) adsorption on a resonator's surface by using a theoretical model that considers the Hamiltonian H composed of elastic bending energy of a resonator and the potential energy for biomolecular interactions.
Revised: We studied the dynamical response of a nanomechanical resonator to biomolecular (e.g. DNA) adsorption on a resonator's surface by using a theoretical model , which considers the Hamiltonian H composed of elastic bending energy of a resonator and the potential energy for biomolecular interactions.
Edit intent: coherence
Original: We studied the dynamical response of a nanomechanical resonator to biomolecular (e.g. DNA) adsorption on a resonator's surface by using a theoretical model that considers the Hamiltonian H composed of elastic bending energy of a resonator and the potential energy for biomolecular interactions.
Revised: We studied the dynamical response of a nanomechanical resonator to biomolecular (e.g. DNA) adsorption on a resonator's surface by using a theoretical model that considers the Hamiltonian H such that the potential energy consists of elastic bending energy of a resonator and the potential energy for biomolecular interactions.
Edit intent: clarity
Original:  It was shown that biomolecular interactions (e. g. DNA-DNA interaction) govern the dynamic behavior of a nanomechanical resonator, suggesting that nanomechanical resonators may enable one to quantify biomolecules .
Revised:  It was shown that biomolecular interactions (e. g. DNA-DNA interaction) govern the dynamic behavior of a resonator. This indicates that nanomechanical resonators may enable one to quantify biomolecules .
Edit intent: coherence
Original: The edge strength s'(G) of a multigraph G{\em   is the minimum number of colors  in a minimum sum edge coloring of G. We give closed formulas for the edge strength of bipartite multigraphs and multicycles.
Revised: The edge strength s'(G) of a multigraph G{\em is the minimum number of colors required in a minimum sum edge coloring of G. We give closed formulas for the edge strength of bipartite multigraphs and multicycles.
Edit intent: clarity
Original:  The morphisms of Probabilistic Sequential Networks are defined using two algebraic conditions , whose imply that the distribution of probabilities in the systems are close .
Revised:  The morphisms of Probabilistic Sequential Networks are defined using two algebraic conditions .
Edit intent: clarity
Original:  This inference is based on a statistical approach to error correction, followed by a combinatorial algorithm for constructing a minimal set of haplotypes which explain the data.
Revised:  This inference is based on a statistical approach to error correction, followed by a combinatorial algorithm for constructing a minimal set of haplotypes that explain the data.
Edit intent: fluency
Original:  Each site, modelled either by a three-state stochastic susceptible-infected-recovered-susceptible (SIRS) system or by the probabilistic Greenberg-Hastings cellular automaton (GHCA) , is continuously and independently stimulated by an external Poisson rate h.
Revised:  Each site, modelled either by a three-state stochastic susceptible-infected-recovered-susceptible system or by the probabilistic Greenberg-Hastings cellular automaton (GHCA) , is continuously and independently stimulated by an external Poisson rate h.
Edit intent: clarity
Original:  Each site, modelled either by a three-state stochastic susceptible-infected-recovered-susceptible (SIRS) system or by the probabilistic Greenberg-Hastings cellular automaton (GHCA) , is continuously and independently stimulated by an external Poisson rate h.
Revised:  Each site, modelled either by a three-state stochastic susceptible-infected-recovered-susceptible (SIRS) system or by the probabilistic Greenberg-Hastings cellular automaton , is continuously and independently stimulated by an external Poisson rate h.
Edit intent: clarity
Original: The problem of intermediates in the fossil record has been fre- quently discussed ever since Darwin.
Revised: The problem of intermediates in the fossil record has been frequently discussed ever since Darwin.
Edit intent: fluency
Original:  The extent of ' gaps' (missing transitional stages) has been used to argue against gradual evolution from a common an- cestor .
Revised:  The extent of ` gaps' (missing transitional stages) has been used to argue against gradual evolution from a common an- cestor .
Edit intent: fluency
Original:  The extent of ' gaps' (missing transitional stages) has been used to argue against gradual evolution from a common an- cestor .
Revised:  The extent of ' gaps' (missing transitional stages) has been used to argue against gradual evolution from a common ancestor .
Edit intent: fluency
Original: The problem of publishing personal data without giving up privacy is  increasingly important.
Revised: The problem of publishing personal data without giving up privacy is becoming increasingly important.
Edit intent: clarity
Original:  An interesting formalization is the k-anonymization, where all rows in a table are clustered in sets of  at least k records, and all the entries for which records in the same cluster have different values are suppressed.
Revised:  An interesting formalization recently proposed is the k-anonymity. This approach requires that the rows in a table are clustered in sets of at least k records, and all the entries for which records in the same cluster have different values are suppressed.
Edit intent: clarity
Original:  The problem has been shown to be NP-hard when the records values are over a ternary alphabet and k = 3. In this paper we show that the problem is not only NP-hard,but also APX-hard ,  when the records values are over a binary alphabet and k = 3.
Revised:  The problem has been shown to be NP-hard when the values are over a ternary alphabet and k = 3. In this paper we show that the problem is not only NP-hard,but also APX-hard , when the records values are over a binary alphabet and k = 3.
Edit intent: fluency
Original:  The problem has been shown to be NP-hard when the records values are over a ternary alphabet and k = 3. In this paper we show that the problem is not only NP-hard,but also APX-hard ,  when the records values are over a binary alphabet and k = 3.
Revised:  The problem has been shown to be NP-hard when the records values are over a ternary alphabet , k = 3. In this paper we show that the problem is not only NP-hard,but also APX-hard , when the records values are over a binary alphabet and k = 3.
Edit intent: fluency
Original: In this paper, we use sparse principal component analysis (PCA) to solve clustering and feature selection problems.
Revised: In this paper, we study the application of sparse principal component analysis (PCA) to solve clustering and feature selection problems.
Edit intent: clarity
Original: In this paper, we use sparse principal component analysis (PCA) to solve clustering and feature selection problems.
Revised: In this paper, we use sparse principal component analysis (PCA) to clustering and feature selection problems.
Edit intent: clarity
Original:  We show that point-like cells form filaments with this characteristic length, before collapsing all together.
Revised:  We show that point-like model cells form network resembling structures tuned by this characteristic length, before collapsing all together.
Edit intent: clarity
Original:  In a second moment, we refine our simulation by introducing a hardcore repulsive force between cells and a force mimicking the  peculiarity of endothelial cells to preserve the direction of their motion (persistence).
Revised:  In a second moment, we refine our simulation by introducing a hardcore repulsive force between cells and a force mimicking the observed peculiarity of endothelial cells to preserve the direction of their motion (persistence).
Edit intent: clarity
Original:  We first introduce four new Theorems for a set of periodic Functions with irrational periods, based on which we then use a trigonometric substitution, to show how the decision version of the HCP can be described by a set of polynomial Equations with a constant number of variables.
Revised:  We first introduce four new Theorems for a set of periodic Functions with irrational periods, based on which we then use a trigonometric substitution, to show how the HCP can be described by a set of polynomial Equations with a constant number of variables.
Edit intent: clarity
Original:  In particular, the description of the spread of sexually transmitted diseases (  Chlamydia, Syphilis, Gonorrhea, AIDS) across population constitutes a major concern for scientists and health agencies.
Revised:  In particular, the description of the spread of sexually transmitted diseases ( e.g. Chlamydia, Syphilis, Gonorrhea, AIDS) across population constitutes a major concern for scientists and health agencies.
Edit intent: clarity
Original:  In particular, the description of the spread of sexually transmitted diseases (  Chlamydia, Syphilis, Gonorrhea, AIDS) across population constitutes a major concern for scientists and health agencies.
Revised:  In particular, the description of the spread of sexually transmitted diseases ( Chlamydia, Syphilis, Gonorrhea, HIV) across populations is a major concern for scientists and health agencies.
Edit intent: clarity
Original:  In this context, both data collection on sexual contact networks and the modeling of disease spreading  are intensively contributing to the search for effective immunization policies.
Revised:  In this context, both data collection on sexual contact networks and the modeling of disease spreading , are intensively contributing to the search for effective immunization policies.
Edit intent: fluency
Original:  Here, the spread of sexually transmitted diseases on bipartite scale-free graphs, representing heterosexual contact networks, is considered.
Revised:  Here, the spreading of sexually transmitted diseases on bipartite scale-free graphs, representing heterosexual contact networks, is considered.
Edit intent: fluency
Original:  The results indicate that in finite bipartite populationswith degree distribution as those found in national surveys of sexual attitudes, the onset of the epidemic outbreak takes place for larger spreading rates than in the case in which the bipartite nature of the network is not taken into account.
Revised:  The results indicate that in empirical observations from national sex surveys, takes place for larger spreading rates than in the case in which the bipartite nature of the network is not taken into account.
Edit intent: clarity
Original:  The results indicate that in finite bipartite populationswith degree distribution as those found in national surveys of sexual attitudes, the onset of the epidemic outbreak takes place for larger spreading rates than in the case in which the bipartite nature of the network is not taken into account.
Revised:  The results indicate that in finite bipartite populationswith degree distribution as those found in national surveys of sexual attitudes, the onset of the epidemic outbreak takes place for larger spreading rates than for the case in which the bipartite nature of the network is not taken into account.
Edit intent: fluency
Original:  The approach adopted here indicates that the restriction to crossed infections between the two classes of individuals (males and females) strongly modifies the results previously found for unipartite heterogeneous populations.
Revised:  Our findings indicate that the restriction to crossed infections between the two classes of individuals (males and females) strongly modifies the results previously found for unipartite heterogeneous populations.
Edit intent: clarity
Original:  The twinness of a pair of nodes is the number of connected, labelled subgraphs of size n in which the two nodes possess identical neighbours.
Revised:  The twinness of a pair of nodes is the number of connected, labeled subgraphs of size n in which the two nodes possess identical neighbours.
Edit intent: fluency
Original:  These include an Escherichia coli PIN and three Saccharomyces cerevisiae PINs - each obtained using state-of-the-art high throughput methods.
Revised:  These include an Escherichia coli PIN and three Saccharomyces cerevisiae PINs -- each obtained using state-of-the-art high throughput methods.
Edit intent: fluency
Original:  Interaction similarity is expected due to gene duplication, and whole genome duplication paralogues in S. Cerevisiae have been reported to co-cluster into the same complexes.
Revised:  Interaction similarity is expected due to gene duplication, and whole genome duplication paralogues in S. cerevisiae have been reported to co-cluster into the same complexes.
Edit intent: fluency
Original:  Indeed, we find that these paralogues are over-represented as twins compared to pairs chosen at random.
Revised:  Indeed, we find that these paralogous proteins are over-represented as twins compared to pairs chosen at random.
Edit intent: clarity
Original: Social interactions and personal tastes shape our consumption behaviors of cultural products.
Revised: Social interactions and personal tastes shape our consumption behavior of cultural products.
Edit intent: fluency
Original:  Our results suggest that the final market shares of the cultural products dramatically depend on the consumer heterogeneity and social interaction pressure.
Revised:  Our results suggest that the final market shares of cultural products dramatically depend on the consumer heterogeneity and social interaction pressure.
Edit intent: fluency
Original:  Our results suggest that the final market shares of the cultural products dramatically depend on the consumer heterogeneity and social interaction pressure.
Revised:  Our results suggest that the final market shares of the cultural products dramatically depend on consumer heterogeneity and social interaction pressure.
Edit intent: fluency
Original:  Furthermore, the relation between the resulting market shares and the social interaction is robust with respect to a wide range of variation in the parameter values and the type of topology.
Revised:  Furthermore, the relation between the resulting market shares and social interaction is robust with respect to a wide range of variation in the parameter values and the type of topology.
Edit intent: fluency
Original:  By appropriately tuning the amount to be shared we can cast a vast variety of scenarios  , including traditional ones in the study of cooperation as well as more complex situations where unexpected behavior can occur.
Revised:  By appropriately tuning the amount to be shared a vast variety of scenarios , including traditional ones in the study of cooperation as well as more complex situations where unexpected behavior can occur.
Edit intent: clarity
Original: Processing compressed strings without decompression is often essential when dealing with massive data sets.
Revised: Computation on compressed strings is one of the key approaches to processing massive data sets.
Edit intent: clarity
Original: In a recent article, Desai and Fisher (2007) proposed a new method to calculate the speed of adaptation in asexual populations.
Revised: In a recent article, Desai and Fisher (2007) proposed that the speed of adaptation in asexual populations.
Edit intent: clarity
Original:  Here, we substantially extend Desai and Fisher's analysis of the dynamics at the stochastic edge.
Revised:  Here, we substantially extend Desai and Fisher's analysis of the stochastic edge.
Edit intent: clarity
Original:  We suggest alternative assumptions, which lead us to a different result compatible with the findings of Rouzine et al. ( 2003, 2007) .
Revised:  We suggest alternative assumptions, which lead us to a different result compatible with the findings of Rouzine et al. 2003, 2007) .
Edit intent: fluency
Original:  Interestingly, in this case the annealed approximation fails to predict the dynamical behavior for sparse connectivities , suggesting that even weak topological correlations can strongly limit its applicability for finite N .
Revised:  , suggesting that even weak topological correlations can strongly limit its applicability for finite N .
Edit intent: coherence
Original:  Efficient numerical methods for calculating <I> show that in the infinite system size limit it exhibits a discontinuity at parameter values corresponding to critical RBNs and that for finite systems it peaks near the critical value, but slightly in the disordered regime for typical parameter variations.
Revised:  Efficient numerical methods for calculating <I> show that in the infinite system size limit it exhibits a discontinuity at parameter values corresponding to critical RBNs . For finite systems it peaks near the critical value, but slightly in the disordered regime for typical parameter variations.
Edit intent: coherence
Original:  The contribution from pairs that are directly linked is zero for critical networks and peaks well into the disordered regime.
Revised:  The contribution from pairs that are directly linked approaches zero for critical networks and peaks well into the disordered regime.
Edit intent: clarity
Original:  The contribution from pairs that are directly linked is zero for critical networks and peaks well into the disordered regime.
Revised:  The contribution from pairs that are directly linked is zero for critical networks and peaks deep in the disordered regime.
Edit intent: clarity