wanyu/IteraTeR_v2 huggingface dataset:
Original:  Motivated by the need for improving the inherently unstable covariance estimation compounded by noisy gene expression data  , we present a hierarchical random covariance model applied as a meta-analysis of gene networks across eleven large-scale gene expression studies of diffuse large B-cell lymphoma (DLBCL).
Revised:  Motivated by the need for improving the inherently unstable covariance estimation compounded by noisy gene expression data , we present a hierarchical random covariance model and use it for the meta-analysis of gene networks across eleven large-scale gene expression studies of diffuse large B-cell lymphoma (DLBCL).
Edit intent: coherence
Original:  Motivated by the need for improving the inherently unstable covariance estimation compounded by noisy gene expression data  , we present a hierarchical random covariance model applied as a meta-analysis of gene networks across eleven large-scale gene expression studies of diffuse large B-cell lymphoma (DLBCL).
Revised:  Motivated by the need for improving the inherently unstable covariance estimation compounded by noisy gene expression data , we present a hierarchical random covariance model applied as a meta-analysis of gene correlation networks across 11 large-scale gene expression studies of diffuse large B-cell lymphoma (DLBCL).
Edit intent: clarity
Original:  Of particular interest was the identification of a network with the S100 family of calcium-binding proteins as central players which further fuels the indications that knock down of these proteins may improve the immunotherapy strategies and outcome of lymphoma patients .
Revised:  In conclusion, the method seems to provide a generally applicable framework for meta-analysis, when multiple features are measured and believed to share a common covariance matrix obscured by study dependent noise .
Edit intent: coherence
Original:  We are particularly interested in programmable matter consisting of simple computational elements, called particles, that can establish and release bonds and can actively move in a self-organized way, and in the feasibility of solving basic problems relevant for programmable matter with them .
Revised:  We are particularly interested in programmable matter consisting of simple computational elements, called particles, that can establish and release bonds and can actively move in a self-organized way, and we investigate the feasibility of solving basic problems relevant for programmable matter with them .
Edit intent: clarity
Original:  We are particularly interested in programmable matter consisting of simple computational elements, called particles, that can establish and release bonds and can actively move in a self-organized way, and in the feasibility of solving basic problems relevant for programmable matter with them .
Revised:  We are particularly interested in programmable matter consisting of simple computational elements, called particles, that can establish and release bonds and can actively move in a self-organized way, and in the feasibility of solving fundamental problems relevant for programmable matter with them .
Edit intent: clarity
Original:  We are particularly interested in programmable matter consisting of simple computational elements, called particles, that can establish and release bonds and can actively move in a self-organized way, and in the feasibility of solving basic problems relevant for programmable matter with them .
Revised:  We are particularly interested in programmable matter consisting of simple computational elements, called particles, that can establish and release bonds and can actively move in a self-organized way, and in the feasibility of solving basic problems relevant for programmable matter .
Edit intent: clarity
Original:  As a  model for such self-organizing particle systems, we will use a general form of the amoebot model first proposed at SPAA 2014.
Revised:  As a suitable model for such self-organizing particle systems, we will use a general form of the amoebot model first proposed at SPAA 2014.
Edit intent: clarity
Original:  As a  model for such self-organizing particle systems, we will use a general form of the amoebot model first proposed at SPAA 2014.
Revised:  As a model for such self-organizing particle systems, we will use a general form of the amoebot model first proposed in SPAA 2014.
Edit intent: clarity
Original:  Based on that model, we present efficient local-control algorithms for leader election and path formation requiring only particles with constant size memory, and we also discuss the limitations of solving these problems within the  amoebot model.
Revised:  Based on that model, we present efficient local-control algorithms for leader election and line formation requiring only particles with constant size memory, and we also discuss the limitations of solving these problems within the amoebot model.
Edit intent: clarity
Original:  Based on that model, we present efficient local-control algorithms for leader election and path formation requiring only particles with constant size memory, and we also discuss the limitations of solving these problems within the  amoebot model.
Revised:  Based on that model, we present efficient local-control algorithms for leader election and path formation requiring only particles with constant size memory, and we also discuss the limitations of solving these problems within the general amoebot model.
Edit intent: clarity
Original:  This tool is similar to Trinity Changing Paths, introduced by Bonamy, Charbit and Thomass\'e to prove the \chi-boundedness of graphs with no induced cycle of length 0 modulo 3.
Revised:  This tool is similar to Trinity Changing Paths, introduced by Bonamy, Charbit and Thomass\'e to prove that graphs with no induced cycle of length 0 modulo 3.
Edit intent: coherence
Original: Aging changes including age spots and atherosclerotic plaques develop in a manner of in-homogeneous and accelerated .
Revised: Aging changes including age spots and atherosclerotic plaques develop in an inhomogeneous and accelerated manner .
Edit intent: fluency
Original:  For understanding this phenomenon, development of aging changes is analyzed by Misrepair mechanism, which is introduced in Misrepair-accumulation theory.
Revised:  For understanding this phenomenon, some aging changes are analyzed by Misrepair mechanism, which is introduced in Misrepair-accumulation theory.
Edit intent: clarity
Original:  For understanding this phenomenon, development of aging changes is analyzed by Misrepair mechanism, which is introduced in Misrepair-accumulation theory.
Revised:  For understanding this phenomenon, development of aging changes is analyzed by Misrepair mechanism, a mechanism proposed in Misrepair-accumulation theory.
Edit intent: clarity
Original:  I. Misrepair is a strategy of repair for increasing the surviving chance of an organism in situations of severe injuries;
Revised:  I. Misrepair is a strategy of repair for survival of an organism in situations of severe injuries;
Edit intent: clarity
Original:  II. Alteration of the structure of a sub-structure by Misrepair also alters the spatial relationship between local sub-structures , and this change will lead to increased damage-sensitivity and reduced repair-efficiency of these sub-structures.
Revised:  II. Misrepair of a sub-structure by Misrepair also alters the spatial relationship between local sub-structures , and this change will lead to increased damage-sensitivity and reduced repair-efficiency of these sub-structures.
Edit intent: clarity
Original:  II. Alteration of the structure of a sub-structure by Misrepair also alters the spatial relationship between local sub-structures , and this change will lead to increased damage-sensitivity and reduced repair-efficiency of these sub-structures.
Revised:  II. Alteration of the structure of a sub-structure also alters the spatial relationship between local sub-structures , and this change will lead to increased damage-sensitivity and reduced repair-efficiency of these sub-structures.
Edit intent: clarity
Original:  II. Alteration of the structure of a sub-structure by Misrepair also alters the spatial relationship between local sub-structures , and this change will lead to increased damage-sensitivity and reduced repair-efficiency of these sub-structures.
Revised:  II. Alteration of the structure of a sub-structure by Misrepair also alters the spatial relationship of this sub-structure with its neighbor sub-structures , and this change will lead to increased damage-sensitivity and reduced repair-efficiency of these sub-structures.
Edit intent: clarity
Original:  II. Alteration of the structure of a sub-structure by Misrepair also alters the spatial relationship between local sub-structures , and this change will lead to increased damage-sensitivity and reduced repair-efficiency of these sub-structures.
Revised:  II. Alteration of the structure of a sub-structure by Misrepair also alters the spatial relationship between local sub-structures . Thus a Misrepair leads to increased damage-sensitivity and reduced repair-efficiency of these sub-structures.
Edit intent: coherence
Original:  The frequency of Misrepairs to these sub-structures is increased and the range of affected sub-structures is enlarged after each time of Misrepair in a vicious circle .
Revised:  By such a vicious circle, the frequency of Misrepairs to these sub-structures is increased and the range of affected sub-structures is enlarged after each time of Misrepair in a vicious circle .
Edit intent: clarity
Original:  The frequency of Misrepairs to these sub-structures is increased and the range of affected sub-structures is enlarged after each time of Misrepair in a vicious circle .
Revised:  The frequency of Misrepairs to these sub-structures is increased and the range of affected sub-structures is enlarged after each time of Misrepair .
Edit intent: clarity
Original:  New spots prefer to develop close to old ones, resulting in an in-homogenous distribution of spots.
Revised:  New spots tend to develop close to old ones, resulting in an in-homogenous distribution of spots.
Edit intent: fluency
Original:  New spots prefer to develop close to old ones, resulting in an in-homogenous distribution of spots.
Revised:  New spots prefer to develop close to old ones, resulting in an inhomogeneous distribution of spots.
Edit intent: fluency
Original:  In conclusion, the in-homogeneous development of aging changes is a result of self-accelerating and focalized accumulation of Misrepairs;
Revised:  In conclusion, the inhomogeneous development of aging changes is a result of self-accelerating and focalized accumulation of Misrepairs;
Edit intent: fluency
Original:  In conclusion, the in-homogeneous development of aging changes is a result of self-accelerating and focalized accumulation of Misrepairs;
Revised:  In conclusion, the in-homogeneous development of aging changes is a result of self-accelerated and focalized accumulation of Misrepairs;
Edit intent: fluency
Original:  thus the process of aging is self-accelerating.
Revised:  and the process of aging is self-accelerating.
Edit intent: fluency
Original: A Monte Carlo simulation for the chemotactic bacteria is developed on the basis of the kinetic modeling, i.e., the Boltzmann transport equation, and applied to the one-dimensional traveling population wave in a micro channel .
Revised: A Monte Carlo simulation of chemotactic bacteria is developed on the basis of the kinetic modeling, i.e., the Boltzmann transport equation, and applied to the one-dimensional traveling population wave in a micro channel .
Edit intent: fluency
Original: A Monte Carlo simulation for the chemotactic bacteria is developed on the basis of the kinetic modeling, i.e., the Boltzmann transport equation, and applied to the one-dimensional traveling population wave in a micro channel .
Revised: A Monte Carlo simulation for the chemotactic bacteria is developed on the basis of the kinetic modeling, i.e., the Boltzmann transport equation, and is applied to a one-dimensional traveling population wave in a micro channel .
Edit intent: fluency
Original: A Monte Carlo simulation for the chemotactic bacteria is developed on the basis of the kinetic modeling, i.e., the Boltzmann transport equation, and applied to the one-dimensional traveling population wave in a micro channel .
Revised: A Monte Carlo simulation for the chemotactic bacteria is developed on the basis of the kinetic modeling, i.e., the Boltzmann transport equation, and applied to the one-dimensional traveling population wave in a microchannel .
Edit intent: fluency
Original:  In this method , the Monte Carlo method, which calculates the run-and-tumble motions of bacteria, is coupled with a finite volume method to solve the macroscopic transport of the chemical cues in the field.
Revised:  In this simulation , the Monte Carlo method, which calculates the run-and-tumble motions of bacteria, is coupled with a finite volume method to solve the macroscopic transport of the chemical cues in the field.
Edit intent: clarity
Original:  In this method , the Monte Carlo method, which calculates the run-and-tumble motions of bacteria, is coupled with a finite volume method to solve the macroscopic transport of the chemical cues in the field.
Revised:  In this method , the Monte Carlo method, which calculates the run-and-tumble motions of bacteria, is coupled with a finite volume method to calculate the macroscopic transport of the chemical cues in the field.
Edit intent: clarity
Original:  The simulation method can successfully reproduce the traveling population wave of bacteria which was observed experimentally.
Revised:  The simulation method can successfully reproduce the traveling population wave of bacteria that was observed experimentally.
Edit intent: fluency
Original:  The microscopic dynamics of bacteria, e.g., the velocity autocorrelation function and velocity distribution function of bacteria, are also investigated.
Revised:  The microscopic dynamics of bacteria, e.g., the velocity autocorrelation function and velocity distribution function of bacteria, is also investigated.
Edit intent: fluency
Original:  It is found that the bacteria which form the traveling population wave create quasi-periodic motions as well as a migratory movement along with the traveling population wave.
Revised:  The bacteria that form the traveling population wave create quasi-periodic motions as well as a migratory movement along with the traveling population wave.
Edit intent: coherence
Original:  It is found that the bacteria which form the traveling population wave create quasi-periodic motions as well as a migratory movement along with the traveling population wave.
Revised:  It is found that the bacteria which form the traveling population wave create quasi-periodic motions along with the traveling population wave.
Edit intent: clarity
Original:  Simulations are also performed with changing the sensitivity and modulation parameters in the response function of bacteria.
Revised:  Simulations are also performed with variations in the sensitivity and modulation parameters in the response function of bacteria.
Edit intent: clarity
Original:  Simulations are also performed with changing the sensitivity and modulation parameters in the response function of bacteria.
Revised:  Simulations are also performed with changing the sensitivity and modulation parameters of the response function of bacteria.
Edit intent: clarity
Original:  It is found that the sensitivity significantly affects both the wave profile and  microscopic motions of bacteria while the modulation amplitude is linearly related to the traveling speed of the population wave  .
Revised:  The sensitivity significantly affects both the wave profile and microscopic motions of bacteria while the modulation amplitude is linearly related to the traveling speed of the population wave .
Edit intent: coherence
Original:  It is found that the sensitivity significantly affects both the wave profile and  microscopic motions of bacteria while the modulation amplitude is linearly related to the traveling speed of the population wave  .
Revised:  It is found that the sensitivity significantly affects both the wave profile and the microscopic motions of bacteria while the modulation amplitude is linearly related to the traveling speed of the population wave .
Edit intent: fluency
Original:  It is found that the sensitivity significantly affects both the wave profile and  microscopic motions of bacteria while the modulation amplitude is linearly related to the traveling speed of the population wave  .
Revised:  It is found that the sensitivity significantly affects both the wave profile and microscopic motions of bacteria , whereas the modulation amplitude is linearly related to the traveling speed of the population wave .
Edit intent: coherence
Original: A Monte Carlo simulation of chemotactic bacteria is developed on the basis of the kinetic modeling, i.e., the Boltzmann transport equation, and is applied to a one-dimensional traveling population wave in a microchannel.
Revised: A Monte Carlo simulation of chemotactic bacteria is developed on the basis of the kinetic model and is applied to a one-dimensional traveling population wave in a microchannel.
Edit intent: coherence
Original:  In this simulation, the Monte Carlo method, which calculates the run-and-tumble motions of bacteria, is coupled with a finite volume method to calculate the macroscopic transport of the chemical cues in the field .
Revised:  In this simulation, the Monte Carlo method, which calculates the run-and-tumble motions of bacteria, is coupled with a finite volume method to calculate the macroscopic transport of the chemical cues in the environment .
Edit intent: clarity
Original:  Thus by communicating only with her neighbors, each agent is able to calculate the difference between her level of importance to others and others' level of importance to her .
Revised:  Thus by communicating only with his neighbors, each agent is able to calculate the difference between her level of importance to others and others' level of importance to her .
Edit intent: fluency
Original:  We show that for almost all initial conditions, the solution of this dynamical system asymptotically converges to an equilibrium which is exponentially stable.
Revised:  We show that for almost all initial conditions, the trajectory generated by this dynamical system asymptotically converges to an equilibrium which is exponentially stable.
Edit intent: clarity
Original:  Thus  by communicating only with his neighbors, each agent is able to calculate the difference between his level of importance to others and others' level of importance to him .
Revised:  Thus , by communicating only with his neighbors, each agent is able to calculate the difference between his level of importance to others and others' level of importance to him .
Edit intent: fluency
Original:  Thus  by communicating only with his neighbors, each agent is able to calculate the difference between his level of importance to others and others' level of importance to him .
Revised:  Thus by communicating only with her neighbors, each agent is able to calculate the difference between his level of importance to others and others' level of importance to him .
Edit intent: fluency
Original:  We show that for almost all initial conditions, the trajectory generated by this dynamical system asymptotically converges to an equilibrium  which is exponentially stable.
Revised:  We show that for almost all initial conditions, the trajectory generated by this dynamical system asymptotically converges to an equilibrium point which is exponentially stable.
Edit intent: clarity
Original:  We develop a polynomial time algorithm which is nearly optimal  under very mild restrictions.
Revised:  We develop a polynomial time algorithm which is nearly optimal in practice under very mild restrictions.
Edit intent: clarity
Original: An algebraic multigrid method is proposed to solve eigenvalue problems based on the combination of the multilevel correction scheme and the algebraic multigrid method for linear equations.
Revised: The aim of this paper is to develop an algebraic multigrid method is proposed to solve eigenvalue problems based on the combination of the multilevel correction scheme and the algebraic multigrid method for linear equations.
Edit intent: coherence
Original: An algebraic multigrid method is proposed to solve eigenvalue problems based on the combination of the multilevel correction scheme and the algebraic multigrid method for linear equations.
Revised: An algebraic multigrid method to solve eigenvalue problems based on the combination of the multilevel correction scheme and the algebraic multigrid method for linear equations.
Edit intent: clarity
Original:  The algebraic multigrid method setup procedure is applied to construct the hierarchy and the intergrid transfer operators.
Revised:  Our approach uses the algebraic multigrid method setup procedure is applied to construct the hierarchy and the intergrid transfer operators.
Edit intent: clarity
Original:  The algebraic multigrid method setup procedure is applied to construct the hierarchy and the intergrid transfer operators.
Revised:  The algebraic multigrid method setup procedure to construct the hierarchy and the intergrid transfer operators.
Edit intent: clarity
Original:  In the algebraic multigrid scheme, a large scale eigenvalue problem can be solved by some algebraic multigrid smoothing steps in the hierarchy and some eigenvalue problemssolving in a very small dimension.
Revised:  In this algebraic multigrid scheme, a large scale eigenvalue problem can be solved by some algebraic multigrid smoothing steps in the hierarchy and some eigenvalue problemssolving in a very small dimension.
Edit intent: fluency
Original:  In the algebraic multigrid scheme, a large scale eigenvalue problem can be solved by some algebraic multigrid smoothing steps in the hierarchy and some eigenvalue problemssolving in a very small dimension.
Revised:  In the algebraic multigrid scheme, a large scale eigenvalue problem is solved by some algebraic multigrid smoothing steps in the hierarchy and some eigenvalue problemssolving in a very small dimension.
Edit intent: clarity
Original:  The dual graph T \triang ^* of a triangulation T of\mathcal{P\triang \Poly is the graph whose vertices correspond to the bounded faces of T \triang and whose edges connect those faces of T\triang that share an edge.
Revised:  The dual graph \triang ^* of a triangulation T of\mathcal{P\triang \Poly is the graph whose vertices correspond to the bounded faces of T \triang and whose edges connect those faces of T\triang that share an edge.
Edit intent: fluency
Original:  The dual graph T \triang ^* of a triangulation T of\mathcal{P\triang \Poly is the graph whose vertices correspond to the bounded faces of T \triang and whose edges connect those faces of T\triang that share an edge.
Revised:  The dual graph T \triang ^* of a triangulation T of\mathcal{P\triang \Poly is the graph whose vertices correspond to the bounded faces of \triang and whose edges connect those faces of T\triang that share an edge.
Edit intent: fluency
Original:  If \mathcal{P \Poly is convex, we show that any minimizing triangulation has dual diameter exactly 2\cdot\lceil\log_2(n/3)\rceil or 2\cdot\lceil\log_2(n/3)\rceil -1, depending on  n.
Revised:  If \Poly is convex, we show that any minimizing triangulation has dual diameter exactly 2\cdot\lceil\log_2(n/3)\rceil or 2\cdot\lceil\log_2(n/3)\rceil -1, depending on n.
Edit intent: coherence
Original:  If \mathcal{P \Poly is convex, we show that any minimizing triangulation has dual diameter exactly 2\cdot\lceil\log_2(n/3)\rceil or 2\cdot\lceil\log_2(n/3)\rceil -1, depending on  n.
Revised:  If \mathcal{P \Poly is convex, we show that any minimizing triangulation has dual diameter exactly 2\cdot\lceil\log_2(n/3)\rceil or 2\cdot\lceil\log_2(n/3)\rceil -1, depending on ~ n.
Edit intent: fluency