wanyu/IteraTeR_v2 huggingface dataset:
Original:  Even though a new a priori {\it  free-parameter is introduced, the overall dependence of the algorithm on external tuning is reduced, as robustness is increased and an optimal strategy for parameter selection emerges more naturally.
Revised:  Even though a new {\it free-parameter is introduced, the overall dependence of the algorithm on external tuning is reduced, as robustness is increased and an optimal strategy for parameter selection emerges more naturally.
Edit intent: clarity
Original:  We impose the constraint that users successively transmit over available bands through proper water filling.
Revised:  We impose the constraint that users successively transmit over available bands through selfish water filling.
Edit intent: clarity
Original:  For the first time, our study has quantified the  achievable gain of using cognitive radio with respect to classical radio devices and derive the total spectral efficiency as well as the maximum number of possible pairwise communications of such a cognitive radio system.
Revised:  For the first time, our study has quantified the achievable gain of using cognitive radio with respect to classical radio systems. We then derive the total spectral efficiency as well as the maximum number of possible pairwise communications of such a cognitive radio system.
Edit intent: clarity
Original: In this paper we describe a new technique for the characterisation of populations of DNA strands.
Revised: In this paper we describe a new technique for the comparison of populations of DNA strands.
Edit intent: clarity
Original:  Such tools are vital to the study of ecological systems, at both the micro (e.g., individual humans) and macro (e.g., lakes) scales.
Revised:  Comparison is vital to the study of ecological systems, at both the micro (e.g., individual humans) and macro (e.g., lakes) scales.
Edit intent: clarity
Original:  Such tools are vital to the study of ecological systems, at both the micro (e.g., individual humans) and macro (e.g., lakes) scales.
Revised:  Such tools are vital to the study of ecological systems, at both the micro and macro scales.
Edit intent: clarity
Original:  Existing methods make extensive use of DNA sequencing and cloning, which can prove costly and time consuming .
Revised:  Existing methods make use of DNA sequencing and cloning, which can prove costly and time consuming .
Edit intent: clarity
Original:  The overall objective is to address questions such as: (i) (Genome detection) Is a known genome sequence present  at least in part  in an environmental sample?
Revised:  The overall objective is to address questions such as: (i) (Genome detection) Is a known genome sequence present , at least in part in an environmental sample?
Edit intent: fluency
Original:  The overall objective is to address questions such as: (i) (Genome detection) Is a known genome sequence present  at least in part  in an environmental sample?
Revised:  The overall objective is to address questions such as: (i) (Genome detection) Is a known genome sequence present at least in part , in an environmental sample?
Edit intent: fluency
Original:  (iii) (Similarity Discovery ) How similar in terms of sequence content are two unsequenced samples?
Revised:  (iii) (Similarity discovery ) How similar in terms of sequence content are two unsequenced samples?
Edit intent: fluency
Original:  Because our method is similar in spirit to hashing in computer science, we call the method%DIFDELCMD < {\it %%%  DNA hash pooling .
Revised:  Because our method is similar in spirit to hashing in computer science, we call %DIFDELCMD < {\it %%% DNA hash pooling .
Edit intent: fluency
Original:  Because our method is similar in spirit to hashing in computer science, we call the method%DIFDELCMD < {\it %%%  DNA hash pooling .
Revised:  Because our method is similar in spirit to hashing in computer science, we call the method%DIFDELCMD < {\it %%% it DNA hash pooling .
Edit intent: fluency
Original:  To illustrate this method, we describe examples using pairs of restriction enzymes.
Revised:  To illustrate this method, we describe protocols using pairs of restriction enzymes.
Edit intent: clarity
Original:  The %DIFDELCMD < {\it %%% in silico empirical results we present reflect a sensitivity to experimental error.
Revised:  The %DIFDELCMD < {\it %%% in silico empirical results we present reflect a sensitivity to experimental error.
Edit intent: fluency
Original:  The method requires minimal DNA sequencing and, when sequencing is required , little or no cloning .
Revised:  Our method will normally be performed as a filtering step prior to sequencing in order to reduce the amount of sequencing required (generally by a factor of 10 or more). Even as sequencing becomes cheaper, an order of magnitude remains important .
Edit intent: coherence
Original:  In this article, we present a mathematical analysis of the effects of Hebbian learning in random recurrent neural networks . Using theoretical tools from dynamical systems and graph theory, we study a generic ``Hebb-like'' learning rule that can include passive forgetting and different time scales for neuron activity and learning dynamics.
Revised:  In this article, we present a mathematical analysis of the effects of Hebbian learning in random recurrent neural networks , with a generic Hebbian learning rule including passive forgetting and different time scales for neuron activity and learning dynamics.
Edit intent: clarity
Original:  In this article, we present a mathematical analysis of the effects of Hebbian learning in random recurrent neural networks . Using theoretical tools from dynamical systems and graph theory, we study a generic ``Hebb-like'' learning rule that can include passive forgetting and different time scales for neuron activity and learning dynamics.
Revised:  In this article, we present a mathematical analysis of the effects of Hebbian learning in random recurrent neural networks . Using theoretical tools from dynamical systems and graph theory, we study a generic ``Hebb-like'' learning rule that can include passive forgetting and different time scales for neuronal activity and learning dynamics.
Edit intent: fluency
Original:  Instead, this coupling can be analyzed more efficiently by the study of Jacobian matrices, which introduce both a structural and a dynamical point  view on the neural network evolution.
Revised:  Instead, this coupling can be analyzed using Jacobian matrices, which introduce both a structural and a dynamical point view on the neural network evolution.
Edit intent: clarity
Original:  Instead, this coupling can be analyzed more efficiently by the study of Jacobian matrices, which introduce both a structural and a dynamical point  view on the neural network evolution.
Revised:  Instead, this coupling can be analyzed more efficiently by the study of Jacobian matrices, which introduce both a structural and a dynamical point of view on the neural network evolution.
Edit intent: fluency
Original:  In this way , we show that ``Hebb-like'' learning leads to a reduction of the complexity of the dynamics manifested by a systematic decay of the largest Lyapunov exponent .
Revised:  Furthermore , we show that ``Hebb-like'' learning leads to a reduction of the complexity of the dynamics manifested by a systematic decay of the largest Lyapunov exponent .
Edit intent: coherence
Original:  In this way , we show that ``Hebb-like'' learning leads to a reduction of the complexity of the dynamics manifested by a systematic decay of the largest Lyapunov exponent .
Revised:  In this way , we show that the sensitivity to a learned pattern is maximal when the largest Lyapunov exponent .
Edit intent: clarity
Original: We present a spatial version of phytoplankton-zooplankton model that contains the important factors , external periodic forcing , noise, and diffusion processes.
Revised: In this paper, we present a spatial version of phytoplankton-zooplankton model that contains the important factors , external periodic forcing , noise, and diffusion processes.
Edit intent: clarity
Original: We present a spatial version of phytoplankton-zooplankton model that contains the important factors , external periodic forcing , noise, and diffusion processes.
Revised: We present a spatial version of phytoplankton-zooplankton model that includes some important factors such as external periodic forces , noise, and diffusion processes.
Edit intent: clarity
Original:  We demonstrate that the noise and the external periodic forcing play a key role in the Scheffer's model: first, the noise can enhance the oscillation of the speciesdensity, and format large clusters in the space ;
Revised:  The system also shows that the noise and the external periodic forcing play a key role in the Scheffer's model: first, the noise can enhance the oscillation of the speciesdensity, and format large clusters in the space ;
Edit intent: clarity
Original:  We demonstrate that the noise and the external periodic forcing play a key role in the Scheffer's model: first, the noise can enhance the oscillation of the speciesdensity, and format large clusters in the space ;
Revised:  We demonstrate that the noise and the external periodic forces play a constructive role in the Scheffer's model: first, the noise can enhance the oscillation of the speciesdensity, and format large clusters in the space ;
Edit intent: clarity
Original:  We demonstrate that the noise and the external periodic forcing play a key role in the Scheffer's model: first, the noise can enhance the oscillation of the speciesdensity, and format large clusters in the space ;
Revised:  We demonstrate that the noise and the external periodic forcing play a key role in the Scheffer's model: first, the noise can enhance the oscillation of phytoplankton species' density and format a large clusters in the space ;
Edit intent: clarity
Original:  Second, the external periodic forcing can induce 4:1 and 1:1 frequency-locking and spatial homogeneous oscillation ;
Revised:  Second, the external periodic forces can induce 4:1 and 1:1 frequency-locking and spatial homogeneous oscillation ;
Edit intent: clarity
Original:  Third , the resonant patterns are observed in the system when the spatial noise and external periodic forcing are both turned on , moreover the frequency-locking is transient versus the noise intensity .
Revised:  Third , the resonant patterns are observed in the system when the spatial noises and external periodic forcing are both turned on , moreover the frequency-locking is transient versus the noise intensity .
Edit intent: fluency
Original:  Third , the resonant patterns are observed in the system when the spatial noise and external periodic forcing are both turned on , moreover the frequency-locking is transient versus the noise intensity .
Revised:  Third , the resonant patterns are observed in the system when the spatial noise and external periodic forces are both turned on , moreover the frequency-locking is transient versus the noise intensity .
Edit intent: fluency
Original:  Third , the resonant patterns are observed in the system when the spatial noise and external periodic forcing are both turned on , moreover the frequency-locking is transient versus the noise intensity .
Revised:  Third , the resonant patterns are observed in the system when the spatial noise and external periodic forcing are both turned on , moreover the frequency-locking transform into 1:1 frequency-locking when the noise intensity .
Edit intent: clarity
Original:  In addition to elucidate our results outside the domain of Turing instability, we provide further analysis of Turing linear instability with the help of the numerical calculation by using the Maple soft . Significantly, the system also exhibit periodic oscillations when the noise is present.
Revised:  In addition to elucidating our results outside the domain of Turing instability, we provide further analysis of Turing linear instability with the help of the numerical calculation by using the Maple soft . Significantly, the system also exhibit periodic oscillations when the noise is present.
Edit intent: fluency
Original:  In addition to elucidate our results outside the domain of Turing instability, we provide further analysis of Turing linear instability with the help of the numerical calculation by using the Maple soft . Significantly, the system also exhibit periodic oscillations when the noise is present.
Revised:  In addition to elucidate our results outside the domain of Turing instability, we provide further analysis of Turing linear stability with the help of the numerical calculation by using the Maple soft . Significantly, the system also exhibit periodic oscillations when the noise is present.
Edit intent: clarity
Original:  In addition to elucidate our results outside the domain of Turing instability, we provide further analysis of Turing linear instability with the help of the numerical calculation by using the Maple soft . Significantly, the system also exhibit periodic oscillations when the noise is present.
Revised:  In addition to elucidate our results outside the domain of Turing instability, we provide further analysis of Turing linear instability with the help of the numerical calculation by using the Maple software . Significantly, the system also exhibit periodic oscillations when the noise is present.
Edit intent: clarity
Original:  In addition to elucidate our results outside the domain of Turing instability, we provide further analysis of Turing linear instability with the help of the numerical calculation by using the Maple soft . Significantly, the system also exhibit periodic oscillations when the noise is present.
Revised:  In addition to elucidate our results outside the domain of Turing instability, we provide further analysis of Turing linear instability with the help of the numerical calculation by using the Maple soft . Significantly, oscillations are enhanced in the system when the noise is present.
Edit intent: clarity
Original:  This means that the oceanic plankton bloom may be partly due to interplay between the stochastic factors and external forcing instead of deterministic factors.
Revised:  This means that the oceanic plankton bloom may partly due to interplay between the stochastic factors and external forcing instead of deterministic factors.
Edit intent: fluency
Original:  This means that the oceanic plankton bloom may be partly due to interplay between the stochastic factors and external forcing instead of deterministic factors.
Revised:  This means that the oceanic plankton bloom may be partly due to interplay between the stochastic factors and external forces instead of deterministic factors.
Edit intent: clarity
Original:  These results are relevant for understanding the effects of natural variability in oceanic plankton bloom.
Revised:  These results also may help us to understand the effects arising from undeniable subject to random fluctuations in oceanic plankton bloom.
Edit intent: clarity
Original:  The incident angles of a point p \in S in G are the angles between any two edges of G that appear consecutively in the circular order of the edges incident to p. A plane straight-line graph is called \phi-open if each vertex has an incident angle of size at least \phi.
Revised:  The of a point p \in S in G are the angles between any two edges of G that appear consecutively in the circular order of the edges incident to p. A plane straight-line graph is called \phi-open if each vertex has an incident angle of size at least \phi.
Edit intent: clarity
Original:  The incident angles of a point p \in S in G are the angles between any two edges of G that appear consecutively in the circular order of the edges incident to p. A plane straight-line graph is called \phi-open if each vertex has an incident angle of size at least \phi.
Revised:  The incident angles incident angles of a vertex p \in S in G are the angles between any two edges of G that appear consecutively in the circular order of the edges incident to p. A plane straight-line graph is called \phi-open if each vertex has an incident angle of size at least \phi.
Edit intent: clarity
Original:  The incident angles of a point p \in S in G are the angles between any two edges of G that appear consecutively in the circular order of the edges incident to p. A plane straight-line graph is called \phi-open if each vertex has an incident angle of size at least \phi.
Revised:  The incident angles of a point p \in S of G are the angles between any two edges of G that appear consecutively in the circular order of the edges incident to p. A plane straight-line graph is called \phi-open if each vertex has an incident angle of size at least \phi.
Edit intent: clarity
Original:  The incident angles of a point p \in S in G are the angles between any two edges of G that appear consecutively in the circular order of the edges incident to p. A plane straight-line graph is called \phi-open if each vertex has an incident angle of size at least \phi.
Revised:  The incident angles of a point p \in S in G are the angles between any two edges of G that appear consecutively in the circular order of the edges incident to p. A plane straight-line graph is called \phi-open if each vertex has an incident angle of size at least \phi.
Edit intent: fluency
Original: We develop a simple quasispecies model that incorporates the effects of transposition, a form of Horizontal Gene Transfer .
Revised: This paper develops a mathematical model describing the influence that conjugation-mediated Horizontal Gene Transfer .
Edit intent: clarity
Original:  We assume that the cells replicate with a first-order growth rate constant k > 1 if \sigma_{via = via, 0 , where via, 0 denotes a viability ``master'' sequence.
Revised:  We assume that the cells replicate with a first-order = via, 0 , where via, 0 denotes a viability ``master'' sequence.
Edit intent: clarity
Original: The ability to reconstruct and identify intracellular protein signaling and biochemical networks is of critical importance in biology today.
Revised: The problem of reconstructing and identifying intracellular protein signaling and biochemical networks is of critical importance in biology today.
Edit intent: clarity
Original:  This method uses specific sparsity arguments that are tailored to the needs of often ill-conditioned systems of representation that arise from the collection of all given trajectories .
Revised:  Our method builds a system of representation by using a collection of integrals of all given trajectories .
Edit intent: clarity
Original:  The enforcement of sparsity allows to consider potentially very large spaces of models and to still be able to detect with high accuracy the few relevant links among nodes, even when moderate noise is added to the measured trajectories.
Revised:  The enforcement of sparsity allows to consider potentially very large spaces of models and it is able to detect with high accuracy the few relevant links among nodes, even when moderate noise is added to the measured trajectories.
Edit intent: coherence
Original:  It was proposed that the progenitor may have been a massive evolved star similar to Eta Carinae, which resides in our own galaxy at a (poorly determined) distance of ~2.5 kpc.
Revised:  It was proposed that the progenitor may have been a massive evolved star similar to eta Carinae, which resides in our own galaxy at a (poorly determined) distance of ~2.5 kpc.
Edit intent: fluency
Original:  Eta Carinae appears ready to detonate , and in fact had an outburst in 1843.
Revised:  Eta Carinae appears ready to detonate .
Edit intent: coherence
Original:  Although it is too distant to pose a serious threat as a normal supernova, and given its rotation axis is unlikely to produce a Gamma Ray Burst oriented toward the Earth, Eta Carinae is about 30,000 times nearer than 2006gy, and we re-evaluate it as a potential superluminous supernova.
Revised:  Although it is too distant to pose a serious threat as a normal supernova, and given its rotation axis is unlikely to produce a Gamma-Ray Burst oriented toward the Earth, Eta Carinae is about 30,000 times nearer than 2006gy, and we re-evaluate it as a potential superluminous supernova.
Edit intent: fluency
Original:  Although it is too distant to pose a serious threat as a normal supernova, and given its rotation axis is unlikely to produce a Gamma Ray Burst oriented toward the Earth, Eta Carinae is about 30,000 times nearer than 2006gy, and we re-evaluate it as a potential superluminous supernova.
Revised:  Although it is too distant to pose a serious threat as a normal supernova, and given its rotation axis is unlikely to produce a Gamma Ray Burst oriented toward the Earth, eta Carinae is about 30,000 times nearer than 2006gy, and we re-evaluate it as a potential superluminous supernova.
Edit intent: fluency
Original:  However, due to reddening and extinction by the interstellar medium, Eta Carinae is unlikely to trigger such effects to any significant degree.
Revised:  However, due to reddening and extinction by the interstellar medium, eta Carinae is unlikely to trigger such effects to any significant degree.
Edit intent: fluency
Original:  Here, we investigate the in-silico evolution of modularity and robustness in complex artificial metabolic networks that encode an increasing amount of information about their environment while acquiring ubiquitous features of biological, social, and engineering networks, such as scale-free edge distribution, small-world property, and fault-tolerance.
Revised:  Here, we investigate the in silico evolution of modularity and robustness in complex artificial metabolic networks that encode an increasing amount of information about their environment while acquiring ubiquitous features of biological, social, and engineering networks, such as scale-free edge distribution, small-world property, and fault-tolerance.
Edit intent: fluency
Original:  We confirm that nodes with high betweenness centrality often connect modules, but find that such nodes also play essential roles within modules .
Revised:  The combination of network modularity tools together with genetic interaction data constitutes a powerful approach to study and dissect the role of modularity in the evolution and function of biological networks .
Edit intent: clarity
Original: This review presents the elastic theory of low-dimensional (one- and two-dimensional) continua and its applications in bio- and nano-structures  including short DNA rings, lipid membranes,  cell membranes,  graphene and carbon nanotubes .
Revised: This review presents the elastic theory of low-dimensional (one- and two-dimensional) continua and its applications in bio- and nano-structures including short DNA rings, lipid membranes, and cell membranes, graphene and carbon nanotubes .
Edit intent: coherence
Original: This review presents the elastic theory of low-dimensional (one- and two-dimensional) continua and its applications in bio- and nano-structures  including short DNA rings, lipid membranes,  cell membranes,  graphene and carbon nanotubes .
Revised: This review presents the elastic theory of low-dimensional (one- and two-dimensional) continua and its applications in bio- and nano-structures including short DNA rings, lipid membranes, cell membranes, graphene and carbon nanotubes 
Edit intent: fluency
Original: A dynamical system model for tumor-immune system interaction together with a method to mimic radiation therapy are proposed.
Revised: A dynamical system model for tumor -- immune system interaction together with a method to mimic radiation therapy are proposed.
Edit intent: fluency
Original: We consider proper 9-colourings of the triangular lattice . Proper q-colourings correspond to configurations in the zero-temperature q-state anti-ferromagnetic Potts model.
Revised: We consider proper 9-colourings of the triangular lattice . Proper q-colourings correspond to configurations in the zero-temperature anti-ferromagnetic Potts model.
Edit intent: clarity
Original: In John Tantalo's on-line game Planarity the player is given a non-plane straight-line drawing  of a planar graph .
Revised: A straight-line drawing of a planar graph .
Edit intent: clarity