wanyu/IteraTeR_full_sent huggingface dataset:
Original:  We characterize this non-ideal behaviour in detail and characterize how the kinetic operation of the gate depends on the  toehold and adjacent domain lengths.
Revised:  We characterize this non-ideal behaviour in detail and characterize how the kinetic operation of the gate depends on the three distinct distinct DNA transitions that it is based on. We observe a exponential kinetic dependence on the toehold length of the competitive displacement operation, but that the gate operation time is only weakly dependent on both the toehold and adjacent domain lengths.
Edit intent: meaning-changed
Original:  We characterize this non-ideal behaviour in detail and characterize how the kinetic operation of the gate depends on the  toehold and adjacent domain lengths. In particular, we observe that, while the final output state is reached with high fidelity when both input strands are present, our simulations exhibit numerous long-lived transition paths from the initial input stateto the final output state .
Revised:  We characterize this non-ideal behaviour in detail and characterize how the kinetic operation of the gate depends on the toehold and adjacent domain length. Our gate displays excellent logical fidelity in three input states, and quite poor fidelity in the fourth input state. This illustrates how non-ideality can have very selective effects on fidelity. Simulations and detailed analysis such as those presented here provide molecular insights into strand displacement computation, that can be also be expected in chemical implementations .
Edit intent: meaning-changed
Original:  In this paper, first we discuss that these two modes can be associated with a category theoretic duality (adjunction) and derive a natural network structure (a path notion) for each mode by appealing to a category theoretic universality.
Revised:  In this paper, first we discuss that these two modes can be associated with the category theoretic duality (adjunction) and derive a natural network structure (a path notion) for each mode by appealing to a category theoretic universality.
Edit intent: fluency
Original:  In this paper, first we discuss that these two modes can be associated with a category theoretic duality (adjunction) and derive a natural network structure (a path notion) for each mode by appealing to a category theoretic universality.
Revised:  In this paper, first we discuss that these two modes can be associated with a category theoretic duality (adjunction) and derive a natural network structure (a path notion) for each mode by appealing to the category theoretic universality.
Edit intent: fluency
Original:  In this paper we seek to address this issue by performing an analysis of more than 24 million news records provided by Thompson Reuters and of their relationship with trading activity for 205 major stocks in the S&P US stock index.
Revised:  In this article, we seek to address this issue by performing an analysis of more than 24 million news records provided by Thompson Reuters and of their relationship with trading activity for 205 major stocks in the S&P US stock index.
Edit intent: fluency
Original:  In this paper we seek to address this issue by performing an analysis of more than 24 million news records provided by Thompson Reuters and of their relationship with trading activity for 205 major stocks in the S&P US stock index.
Revised:  In this paper we seek to address this issue by performing an analysis of more than 24 million news records provided by Thompson Reuters and of their relationship with trading activity for 206 major stocks in the S&P US stock index.
Edit intent: meaning-changed
Original:  Our results show that one of the most puzzling stylized fact in financial economies, namely that at certain times trading volumes appear to be "abnormally large," can be  explained by the flow of news.
Revised:  Our results show that one of the most puzzling stylized fact in financial economies, namely that at certain times trading volumes appear to be "abnormally large," can be partially explained by the flow of news.
Edit intent: meaning-changed
Original:  This concentration is identified as an onset of crowding beyond which it is impossible, even in principle, to extract information about hydrodynamic size of the peptide-surfactant complex  ]  .
Revised:  This concentration is identified as an onset of crowding beyond which it is impossible, even in principle, to extract information about hydrodynamic size of the peptide-surfactant complex from diffusion measurements, experiments must be carried out at or below ] .
Edit intent: meaning-changed
Original:  This concentration is identified as an onset of crowding beyond which it is impossible, even in principle, to extract information about hydrodynamic size of the peptide-surfactant complex  ]  .
Revised:  This concentration is identified as an onset of crowding beyond which it is impossible, even in principle, to extract information about hydrodynamic size of the peptide-surfactant complex ] = 25 mM .
Edit intent: meaning-changed
Original:  In this article  , we develop a liquidation model in which the trader is constrained to liquidate a portfolio at constant participation rate  . Considering the functional forms usually used by practitioners  , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a trader should quote to buy a large block of shares.
Revised: When executing their orders, investors are proposed different strategies by brokers and investment banks. Most orders are executed using VWAP algorithms. Other basic execution strategies include POV (also called PVol) -- for percentage of volume --, IS -- implementation shortfall -- or Target Close. In this article , we develop a liquidation model in which the trader is constrained to liquidate a portfolio at constant participation rate . Considering the functional forms usually used by practitioners , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a trader should quote to buy a large block of shares.
Edit intent: meaning-changed
Original:  In this article  , we develop a liquidation model in which the trader is constrained to liquidate a portfolio at constant participation rate  . Considering the functional forms usually used by practitioners  , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a trader should quote to buy a large block of shares.
Revised:  In this article dedicated to POV strategies , we develop a liquidation model in which the trader is constrained to liquidate a portfolio at constant participation rate . Considering the functional forms usually used by practitioners , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a trader should quote to buy a large block of shares.
Edit intent: meaning-changed
Original:  In this article  , we develop a liquidation model in which the trader is constrained to liquidate a portfolio at constant participation rate  . Considering the functional forms usually used by practitioners  , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a trader should quote to buy a large block of shares.
Revised:  In this article , we develop a liquidation model in which a trader is constrained to liquidate a portfolio at constant participation rate . Considering the functional forms usually used by practitioners , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a trader should quote to buy a large block of shares.
Edit intent: fluency
Original:  In this article  , we develop a liquidation model in which the trader is constrained to liquidate a portfolio at constant participation rate  . Considering the functional forms usually used by practitioners  , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a trader should quote to buy a large block of shares.
Revised:  In this article , we develop a liquidation model in which the trader is constrained to liquidate a portfolio with a constant participation rate . Considering the functional forms usually used by practitioners , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a trader should quote to buy a large block of shares.
Edit intent: clarity
Original:  In this article  , we develop a liquidation model in which the trader is constrained to liquidate a portfolio at constant participation rate  . Considering the functional forms usually used by practitioners  , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a trader should quote to buy a large block of shares.
Revised:  In this article , we develop a liquidation model in which the trader is constrained to liquidate a portfolio at constant participation rate to the market . Considering the functional forms usually used by practitioners , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a trader should quote to buy a large block of shares.
Edit intent: clarity
Original:  In this article  , we develop a liquidation model in which the trader is constrained to liquidate a portfolio at constant participation rate  . Considering the functional forms usually used by practitioners  , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a trader should quote to buy a large block of shares.
Revised:  In this article , we develop a liquidation model in which the trader is constrained to liquidate a portfolio at constant participation rate . Considering the functional forms usually used by practitioners for market impact functions , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a trader should quote to buy a large block of shares.
Edit intent: meaning-changed
Original:  In this article  , we develop a liquidation model in which the trader is constrained to liquidate a portfolio at constant participation rate  . Considering the functional forms usually used by practitioners  , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a trader should quote to buy a large block of shares.
Revised:  In this article , we develop a liquidation model in which the trader is constrained to liquidate a portfolio at constant participation rate . Considering the functional forms usually used by practitioners , we obtain a closed-form expression for the optimal participation rate . Also, we develop a microfounded risk-liquidity premium that permits to better assess the costs and risks of execution processes and to give a price to a trader should quote to buy a large block of shares.
Edit intent: meaning-changed
Original:  In this article  , we develop a liquidation model in which the trader is constrained to liquidate a portfolio at constant participation rate  . Considering the functional forms usually used by practitioners  , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a trader should quote to buy a large block of shares.
Revised:  In this article , we develop a liquidation model in which the trader is constrained to liquidate a portfolio at constant participation rate . Considering the functional forms usually used by practitioners , we obtain a closed-form expression for the optimal participation rate and for the liquidity premium a large block of shares.
Edit intent: clarity
Original:  We also show that the difference in terms of liquidity premiumbetween the constant participation rate case and the usual Almgren-Chriss-like case never exceeds 15\% .
Revised:  We also provide a thorough comparison between IS strategies and POV strategies in terms of liquidity premiumbetween the constant participation rate case and the usual Almgren-Chriss-like case never exceeds 15\% .
Edit intent: meaning-changed
Original:  Here we give empirical evidences , by making as few assumptions as possible, that the market microstructure capturing almost all of the available information in the data of stock markets does not involve higher order than pairwise interactions.
Revised:  Here we give empirical evidence , by making as few assumptions as possible, that the market microstructure capturing almost all of the available information in the data of stock markets does not involve higher order than pairwise interactions.
Edit intent: fluency
Original:  Here we give empirical evidence, by making as few assumptions as possible, that the market microstructure capturing almost all of the available information in the data of stock markets does not involve higher order than pairwise interactions. We give an economic interpretation of this pairwise model. We show that it accurately recovers the empirical correlation coefficients thus the collective behaviors are quantitatively described by models that capture the observed pairwise correlations but no higher-order interactions. Furthermore, we show that an order-disorder transition occurs as predicted by the pairwise model.
Revised:  Here , we show that an order-disorder transition occurs as predicted by the pairwise model.
Edit intent: coherence
Original:  Furthermore, we show that an order-disorder transition occurs as predicted by the pairwise model. Last, we make the link with the graph-theoretic description of stock markets recovering the non-random and scale-free topology, shrinking length during crashes and meaningful clustering features as expected  .
Revised:  Furthermore, we show that a pairwise maximum entropy model (or auto-logistic model) is able to describe switches between ordered (strongly correlated) and disordered market states. In this framework, the influence matrix may be thought as a dissimilarity measure and we explain how it can be used to study market structure. We make the link with the graph-theoretic description of stock markets recovering the non-random and scale-free topology, shrinking length during crashes and meaningful clustering features as expected .
Edit intent: meaning-changed
Original:  Last, we make the link with the graph-theoretic description of stock markets recovering the non-random and scale-free topology, shrinking length during crashes and meaningful clustering features as expected  .
Revised:  Last, we make the link with the graph-theoretic description of stock markets recovering the non-random and scale-free topology, shrinking length during crashes and meaningful clustering features as expected . The pairwise model provides an alternative method to study financial networks which may be useful for characterization of abnormal market states (crises and bubbles), in capital allocation or for the design of regulation rules .
Edit intent: meaning-changed
Original:  Sources of fluctuations due to autophosphorylation, kinase and phosphatase activity of the sensor kinase have been considered in the model via Langevin equations, which are then solved exactly within the framework of linear noise approximation.
Revised:  Sources of fluctuations due to autophosphorylation, kinase and phosphatase activity of the sensor kinase have been considered in the model via Langevin equations, which are then solved within the framework of linear noise approximation.
Edit intent: clarity
Original:  Enhancement and reduction of noise in terms of extra phosphate outflux and influx, respectively, have been analyzed for the branched system  .
Revised:  Enhancement and reduction of noise in terms of extra phosphate outflux and influx, respectively, have been analyzed for the branched system . Furthermore, role of fluctuations of the network output in the regulation of a promoter with random activation/deactivation dynamics has been analyzed .
Edit intent: meaning-changed
Original:  Generally, miRNAs vary their physical targets and functions with the switch of pluripotency to differentiation state. During pluripotency miRNAs primarily and mechanistically target and repress developmental processes, but surprisingly  miRNAs do not directly target the pluripotent core factors but only mediate extrinsic signal pathways associated with pluripotency.
Revised:  Generally, miRNAs primarily repress developmental processes, but surprisingly miRNAs do not directly target the pluripotent core factors but only mediate extrinsic signal pathways associated with pluripotency.
Edit intent: clarity
Original:  During pluripotency miRNAs primarily and mechanistically target and repress developmental processes, but surprisingly  miRNAs do not directly target the pluripotent core factors but only mediate extrinsic signal pathways associated with pluripotency.
Revised:  During pluripotency miRNAs primarily and mechanistically target and repress developmental processes, but surprisingly the top up-regulated miRNAs do not directly target the pluripotent core factors but only mediate extrinsic signal pathways associated with pluripotency.
Edit intent: meaning-changed
Original:  During pluripotency miRNAs primarily and mechanistically target and repress developmental processes, but surprisingly  miRNAs do not directly target the pluripotent core factors but only mediate extrinsic signal pathways associated with pluripotency.
Revised:  During pluripotency miRNAs primarily and mechanistically target and repress developmental processes, but surprisingly miRNAs do not directly target the pluripotent core factors as thought; they only target extrinsic signal pathways associated with pluripotency.
Edit intent: clarity
Original:  Interestingly,  DNA methylation in enhancer regions mediates these miRNA activations. Together, under mediation by DNA methylation, miRNAs directly repress development and mechanistically modulate the pluripotent signal pathways to help stem cells maintain pluripotency;
Revised:  Interestingly, DNA methylation, miRNAs directly repress development and mechanistically modulate the pluripotent signal pathways to help stem cells maintain pluripotency;
Edit intent: clarity
Original:  Together, under mediation by DNA methylation, miRNAs directly repress development and mechanistically modulate the pluripotent signal pathways to help stem cells maintain pluripotency; yet miRNAs directly repress both pluripotency and metabolism to facilitate cell differentiation .
Revised:  Together, under mediation by DNA methylation, and decreasing methylation in turn activates the top miRNAs. This system-wide circuit between up-regulated miRNAs and the repressed DNA methylation system would eventually activate pluripotent core factors for pluripotency. Therefore, miRNAs systematically repress development and inhibit the epigenetic system to modulate stem cell pluripotency .
Edit intent: meaning-changed
Original:  Interestingly, miRNAs predominately target and repress DNA methyltransferase, core enzymes for DNA methylation, and decreasing methylation in turn activates the top miRNAs.
Revised:  Interestingly, miRNAs predominately target and repress DNA methyltransferases, the core enzymes for DNA methylation, and decreasing methylation in turn activates the top miRNAs.
Edit intent: fluency
Original:  This study systematically reveals the global mechanism of miRNA functions in mouse stem cells by analyzing genome-wide physical interactions between miRNAs and their targets.
Revised:  This study systematically analyzes multiple-omics data and builds a systems physical network including genome-wide interactions between miRNAs and their targets to reveal the systems mechanism of miRNA functions in mouse stem cells by analyzing genome-wide physical interactions between miRNAs and their targets.
Edit intent: meaning-changed
Original:  This study systematically reveals the global mechanism of miRNA functions in mouse stem cells by analyzing genome-wide physical interactions between miRNAs and their targets. Generally, miRNAs primarily repress developmental processes, but surprisingly the top up-regulated miRNAs do not directly target the pluripotent core factors as thought ;
Revised:  This study systematically reveals the global mechanism of miRNA functions in mouse pluripotent stem cells. Globally, miRNAs directly repress the pluripotent core factors during differentiation state. Surprisingly, during pluripotent state, the top important miRNAs do not directly target the pluripotent core factors as thought ;
Edit intent: clarity
Original:  Generally, miRNAs primarily repress developmental processes, but surprisingly the top up-regulated miRNAs do not directly target the pluripotent core factors as thought ; they only target the signal pathways associated with pluripotency. This suggests that the most important miRNAs in stem cells may only indirectly regulate the pluripotency. Interestingly, miRNAs predominately target and repress DNA methyltransferases, the core enzymes for DNA methylation , and decreasing methylation in turn activates the top miRNAs . This system-wide circuit between up-regulated miRNAs and the repressed DNA methylation system eventually activates the pluripotent core factors for pluripotency.
Revised:  Generally, miRNAs primarily repress developmental processes, but surprisingly the top up-regulated miRNAs do not directly target the pluripotent core factors as thought , but they only directly target the pluripotent signal pathways and directly repress developmental processes. Furthermore, at pluripotent state miRNAs predominately repress DNA methyltransferases, the core enzymes for DNA methylation , and decreasing methylation in turn activates the top miRNAs . This system-wide circuit between up-regulated miRNAs and the repressed DNA methylation system eventually activates the pluripotent core factors for pluripotency.
Edit intent: clarity
Original:  Interestingly, miRNAs predominately target and repress DNA methyltransferases, the core enzymes for DNA methylation , and decreasing methylation in turn activates the top miRNAs . This system-wide circuit between up-regulated miRNAs and the repressed DNA methylation system eventually activates the pluripotent core factors for pluripotency.
Revised:  Interestingly, miRNAs predominately target and repress DNA methyltransferases, the core enzymes for DNA methylation . The decreasing methylation repressed by miRNAs in turn activates the top miRNAs . This system-wide circuit between up-regulated miRNAs and the repressed DNA methylation system eventually activates the pluripotent core factors for pluripotency.
Edit intent: clarity
Original:  Interestingly, miRNAs predominately target and repress DNA methyltransferases, the core enzymes for DNA methylation , and decreasing methylation in turn activates the top miRNAs . This system-wide circuit between up-regulated miRNAs and the repressed DNA methylation system eventually activates the pluripotent core factors for pluripotency.
Revised:  Interestingly, miRNAs predominately target and repress DNA methyltransferases, the core enzymes for DNA methylation , and decreasing methylation in turn activates the top miRNAs and pluripotent core factors for pluripotency.
Edit intent: clarity