wanyu/IteraTeR_full_sent huggingface dataset:
Original:  We further explain the reason that the light harvester must be a ring instead of a ball, the function of the notch at the LH1-RC complex, the non-heme iron at the reaction center, the chlorophylls are dielectric instead of conductor, a mechanism to prevent damages from excess sunlight, the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed.
Revised:  We further explain the reason that the light harvester must be a ring instead of a ball, the function of the notch at the LH1-RC complex, the function of the polypeptide termed PufX presented at the notch, the function of the special pair, the shape of the light harvestor must not be spherical, the cross section of the light harvestor must not be circular, the chlorophylls are dielectric instead of conductor, a mechanism to prevent damages from excess sunlight, the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed.
Edit intent: meaning-changed
Original:  the function of the polypeptide termed PufX presented at the notch, the function of the special pair, the shape of the light harvestor must not be spherical, the cross section of the light harvestor must not be circular, the chlorophylls are dielectric instead of conductor,  a mechanism to prevent damages from excess sunlight , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed  .
Revised:  the function of the PufX presented at the notch, the function of the special pair, the shape of the light harvestor must not be spherical, the cross section of the light harvestor must not be circular, the chlorophylls are dielectric instead of conductor, a mechanism to prevent damages from excess sunlight , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed .
Edit intent: clarity
Original:  the function of the polypeptide termed PufX presented at the notch, the function of the special pair, the shape of the light harvestor must not be spherical, the cross section of the light harvestor must not be circular, the chlorophylls are dielectric instead of conductor,  a mechanism to prevent damages from excess sunlight , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed  .
Revised:  the function of the polypeptide termed PufX presented at the notch, the function of the special pair, the bacteriochlorophylls are dielectric instead of conductor, a mechanism to prevent damages from excess sunlight , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed .
Edit intent: clarity
Original:  the function of the polypeptide termed PufX presented at the notch, the function of the special pair, the shape of the light harvestor must not be spherical, the cross section of the light harvestor must not be circular, the chlorophylls are dielectric instead of conductor,  a mechanism to prevent damages from excess sunlight , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed  .
Revised:  the function of the polypeptide termed PufX presented at the notch, the function of the special pair, the shape of the light harvestor must not be spherical, the cross section of the light harvestor must not be circular, the chlorophylls are dielectric instead of conductor, and a mechanism to prevent damages from excess sunlight , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed .
Edit intent: coherence
Original:  the function of the polypeptide termed PufX presented at the notch, the function of the special pair, the shape of the light harvestor must not be spherical, the cross section of the light harvestor must not be circular, the chlorophylls are dielectric instead of conductor,  a mechanism to prevent damages from excess sunlight , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed  .
Revised:  the function of the polypeptide termed PufX presented at the notch, the function of the special pair, the shape of the light harvestor must not be spherical, the cross section of the light harvestor must not be circular, the chlorophylls are dielectric instead of conductor, a mechanism to prevent damages from excess sunlight . The non-heme iron at the reaction center, the toroidal shape of the light harvestor, the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed .
Edit intent: meaning-changed
Original:  the function of the polypeptide termed PufX presented at the notch, the function of the special pair, the shape of the light harvestor must not be spherical, the cross section of the light harvestor must not be circular, the chlorophylls are dielectric instead of conductor,  a mechanism to prevent damages from excess sunlight , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed  .
Revised:  the function of the polypeptide termed PufX presented at the notch, the function of the special pair, the shape of the light harvestor must not be spherical, the cross section of the light harvestor must not be circular, the chlorophylls are dielectric instead of conductor, a mechanism to prevent damages from excess sunlight , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed suggest non-reciprocity .
Edit intent: meaning-changed
Original: From a point of view of classical electrodynamics, the performance of two-dimensional shape-simplified antennaeis discussed based upon the shape of naturally designed systems to harvest light . We explain the reason that the function of the notch at the complex, the function of the PufX presented at the notch, the function of the special pair, the bacteriochlorophylls are dielectric instead of conductor, and a mechanism to prevent damages from excess sunlight.
Revised: Most of our current understanding of mechanisms of photosynthesis comes from spectroscopy. However, classical definition of radio-antenna can be extended to optical regime to discuss the function of light-harvesting antennae. Further to our previously proposed model of a loop antenna we provide several more physical explanations on considering the non-reciprocal properties of the light harvesters of bacteria. We explained the function of the notch at the complex, the function of the PufX presented at the notch, the function of the special pair, the bacteriochlorophylls are dielectric instead of conductor, and a mechanism to prevent damages from excess sunlight.
Edit intent: meaning-changed
Original:  We explain the reason that the function of the notch at the complex, the function of the PufX presented at the notch, the function of the special pair, the bacteriochlorophylls are dielectric instead of conductor, and a mechanism to prevent damages from excess sunlight. The non-heme iron at the reaction center, the toroidal shape of the light harvestor , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed suggest non-reciprocity.
Revised:  We explain the reason that the function of the non-heme iron at the reaction center, the toroidal shape of the light harvestor , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed suggest non-reciprocity.
Edit intent: coherence
Original:  The non-heme iron at the reaction center, the toroidal shape of the light harvestor , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed suggest non-reciprocity.
Revised:  The non-heme iron at the reaction center, and presented reasons for each module of the light harvester being composed of one carotenoid, two short \alpha-helical polypeptides and three bacteriochlorophylls; we explained also the toroidal shape of the light harvester, the upper bound of the characteristic length of the light harvestor , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed suggest non-reciprocity.
Edit intent: meaning-changed
Original:  The non-heme iron at the reaction center, the toroidal shape of the light harvestor , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed suggest non-reciprocity.
Revised:  The non-heme iron at the reaction center, the toroidal shape of the light harvester , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed suggest non-reciprocity.
Edit intent: fluency
Original:  The non-heme iron at the reaction center, the toroidal shape of the light harvestor , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed suggest non-reciprocity. Our model has the required structural information automatically built in. We further comment about how our prediction might be verified experimentally{\it  {\it   .
Revised:  The non-heme iron at the reaction center, the toroidal shape of the light harvestor , the functional role played by the long-lasting spectrometric signal observed, and the photon anti-bunching observed . Based on these analyses, two mechanisms might be used by radiation-durable bacteria,{\it {\it .
Edit intent: clarity
Original:  We further comment about how our prediction might be verified experimentally{\it  {\it   .
Revised:  We further comment about how our prediction might be verified experimentally{\it {\it , are analyzed. The physical lessons involved are useful for designing artificial light harvesters, optical sensors, wireless power chargers, passive super-Planckian heat radiators, photocatalytic hydrogen generators, and radiation protective cloaks. In particular it can predict what kind of particles should be used to separate sunlight into a photovoltaically and thermally useful range to enhance the efficiency of solar cells .
Edit intent: meaning-changed
Original:  This allows to analyze the influence of a refractory (insensitivity) period following a reversal of movement.
Revised:  However we found that the derived macroscopic model lacks a diffusion term in the density equations, which is necessary to control the number of waves, indicating that a higher order approximation during the derivation is crucial. Upon ad-hoc addition of the diffusion term, we found very good agreement between the age-structured model and the biology. In particular we analyzed the influence of a refractory (insensitivity) period following a reversal of movement.
Edit intent: meaning-changed
Original: Allosteric molecules serve as regulators of cellular activity across all domains of life . We present a general theory of allosteric transcriptional regulation that permits quantitative predictions for how physiological responses are tuned to environmental stimuli.
Revised: Allosteric molecules serve as regulators of cellular activity across all domains of life , yet we still lack simple, predictive theories that directly link the experimentally tunable parameters of a system to its input-output response. To that end, we present a general theory of allosteric transcriptional regulation that permits quantitative predictions for how physiological responses are tuned to environmental stimuli.
Edit intent: meaning-changed
Original:  We present a general theory of allosteric transcriptional regulation that permits quantitative predictions for how physiological responses are tuned to environmental stimuli. To test the model 's predictive power, we apply it to the specific case of the ubiquitous simple repression motif in bacteria .
Revised:  We present a general theory of allosteric transcriptional regulation using the Monod-Wyman-Changeux model. We rigorously test this model using the ubiquitous simple repression motif in bacteria .
Edit intent: meaning-changed
Original:  To test the model 's predictive power, we apply it to the specific case of the ubiquitous simple repression motif in bacteria . We measure the fold-change in gene expression at different inducer concentrations in a collection of strains that span a  range of repressor copy numbers and operator binding strengths . After inferring the inducer dissociation constants using data from one of these strains, we show the broad reach of the model by predicting the induction profiles of all other strains  .
Revised:  To test the model 's predictive power, we apply it to the specific case of the ubiquitous simple repression motif in bacteria by first predicting the behavior of strains that span a range of repressor copy numbers and operator binding strengths . After inferring the inducer dissociation constants using data from one of these strains, we show the broad reach of the model by predicting the induction profiles of all other strains .
Edit intent: clarity
Original:  We measure the fold-change in gene expression at different inducer concentrations in a collection of strains that span a  range of repressor copy numbers and operator binding strengths . After inferring the inducer dissociation constants using data from one of these strains, we show the broad reach of the model by predicting the induction profiles of all other strains  .
Revised:  We measure the fold-change in gene expression at different inducer concentrations in a collection of strains that span a large range of repressor copy numbers and operator binding strengths . After inferring the inducer dissociation constants using data from one of these strains, we show the broad reach of the model by predicting the induction profiles of all other strains .
Edit intent: clarity
Original:  We measure the fold-change in gene expression at different inducer concentrations in a collection of strains that span a  range of repressor copy numbers and operator binding strengths . After inferring the inducer dissociation constants using data from one of these strains, we show the broad reach of the model by predicting the induction profiles of all other strains  .
Revised:  We measure the fold-change in gene expression at different inducer concentrations in a collection of strains that span a range of repressor copy numbers and DNA binding strengths and then constructing and measuring their response. Our model not only accurately captures the induction profiles of all other strains .
Edit intent: meaning-changed
Original:  We measure the fold-change in gene expression at different inducer concentrations in a collection of strains that span a  range of repressor copy numbers and operator binding strengths . After inferring the inducer dissociation constants using data from one of these strains, we show the broad reach of the model by predicting the induction profiles of all other strains  .
Revised:  We measure the fold-change in gene expression at different inducer concentrations in a collection of strains that span a range of repressor copy numbers and operator binding strengths . After inferring the inducer dissociation constants using data from one of these strains, we show the broad reach of the model by predicting the induction profiles of these strains but also enables us to derive analytic expressions for key properties such as the dynamic range and .
Edit intent: meaning-changed
Original:  We measure the fold-change in gene expression at different inducer concentrations in a collection of strains that span a  range of repressor copy numbers and operator binding strengths . After inferring the inducer dissociation constants using data from one of these strains, we show the broad reach of the model by predicting the induction profiles of all other strains  .
Revised:  We measure the fold-change in gene expression at different inducer concentrations in a collection of strains that span a range of repressor copy numbers and operator binding strengths . After inferring the inducer dissociation constants using data from one of these strains, we show the broad reach of the model by predicting the induction profiles of all other strains EC_{50 .
Edit intent: meaning-changed
Original:  Finally, we derive an expression for the free energy of allosteric transcription factors which enables us to collapse the data from all of our experiments onto a single master curve , capturing the diverse phenomenology of the induction profiles.
Revised:  Finally, we derive an expression for the free energy of allosteric repressors which enables us to collapse the data from all of our experiments onto a single master curve , capturing the diverse phenomenology of the induction profiles.
Edit intent: meaning-changed
Original:  Finally, we derive an expression for the free energy of allosteric transcription factors which enables us to collapse the data from all of our experiments onto a single master curve , capturing the diverse phenomenology of the induction profiles.
Revised:  Finally, we derive an expression for the free energy of allosteric transcription factors which enables us to collapse our experimental data onto a single master curve , capturing the diverse phenomenology of the induction profiles.
Edit intent: clarity
Original:  Finally, we derive an expression for the free energy of allosteric transcription factors which enables us to collapse the data from all of our experiments onto a single master curve , capturing the diverse phenomenology of the induction profiles.
Revised:  Finally, we derive an expression for the free energy of allosteric transcription factors which enables us to collapse the data from all of our experiments onto a single master curve that captures the diverse phenomenology of the induction profiles.
Edit intent: coherence
Original:  Our representation is given in terms of Malliavin calculus for L\'evy processes .
Revised:  Some representations of mean-variance hedging strategies for jump type models have already been suggested, but none is suited to develop numerical methods of the values of strategies for any given time up to the maturity. In this paper, we aim to derive a new explicit closed-form representation, which enables us to develop an efficient numerical method using the fast Fourier transforms. Note that our representation is described in terms of Malliavin calculus for L\'evy processes .
Edit intent: meaning-changed
Original:  We extend the existence results to consider monotonicity, uniqueness, and sensitivity results under fixed exchange rates between assets  .
Revised:  We extend the existence results to consider monotonicity, uniqueness, and sensitivity results under fixed exchange rates between assets . We additionally provide results on the sensitivity of the equilibrium portfolio holdings under misspecification of the system parameters (i.e., initial endowments and interbank liabilities) .
Edit intent: meaning-changed
Original:  We extend the existence results to consider monotonicity, uniqueness, and sensitivity results under fixed exchange rates between assets. We additionally provide results on the sensitivity of the equilibriumportfolio holdings under misspecification of the system parameters (i. e., initial endowments and interbank liabilities) .
Revised:  We extend this result by considering the t\^atonnement process to find the unique attained equilibrium .
Edit intent: meaning-changed
Original:   The combined experimental, modeling, and bioinformatic DDFT analysis should yield more complete knowledge on the chromosome architecture and URLanization.
Revised:  As a brief illustration of further abilities of DDFT, the study of large-scale URLanization for bacteriophage PHIX174 and bacterium Caulobacter crescentus was also added. The combined experimental, modeling, and bioinformatic DDFT analysis should yield more complete knowledge on the chromosome architecture and URLanization.
Edit intent: meaning-changed
Original: Bond rating Transition Probability Matrices (TPMs) are built over a one-year time-frame and for many practical purposes, like the assessment of risk in portfolios  , one needs to compute the TPM for a smaller time interval.
Revised: Bond rating Transition Probability Matrices (TPMs) are built over a one-year time-frame and for many practical purposes, like the assessment of risk in portfolios or the computation of banking Capital Requirements (e.g. the new IFRS 9 regulation) , one needs to compute the TPM for a smaller time interval.
Edit intent: meaning-changed
Original: Bond rating Transition Probability Matrices (TPMs) are built over a one-year time-frame and for many practical purposes, like the assessment of risk in portfolios  , one needs to compute the TPM for a smaller time interval.
Revised: Bond rating Transition Probability Matrices (TPMs) are built over a one-year time-frame and for many practical purposes, like the assessment of risk in portfolios , one needs to compute the TPM and probabilities of default over a smaller time interval.
Edit intent: meaning-changed
Original:  We focus on the Expectation-Maximization (EM) algorithm by \mbox{%DIFAUXCMD BladtSorensen2005 for a CTMC with an absorbing state for such estimation.
Revised:  We focus on the Expectation-Maximization (EM) algorithm by Bladt and Sorensen (2005) for a CTMC with an absorbing state for such estimation.
Edit intent: clarity
Original:  Firstly, we provide directly computable closed form expressions for quantities appearing in the EM algorithm  . Previously, these quantities had to be estimated numerically and considerable computational speedups have been gained.
Revised:  Firstly, we provide directly computable closed form expressions for quantities appearing in the EM algorithm and associated information matrix, allowing to easily approximate confidence intervals . Previously, these quantities had to be estimated numerically and considerable computational speedups have been gained.
Edit intent: meaning-changed
Original:  The EM algorithm we propose, padded with the new formulas (and error criteria), is very competitive and outperforms other known algorithms in several metrics  .
Revised:  The EM algorithm we propose, padded with the new formulas (and error criteria), is very competitive and outperforms other known algorithms in several metrics , in particular, with much less overestimation of probabilities of default in higher ratings than other statistical algorithms .
Edit intent: meaning-changed
Original:  A serious deficiency of V@R is that firms can hide their total downside risk in corporate groups. They can largely reduce their total capital requirements via appropriate transfer agreements within a group structure consisting of sufficiently many entities and thereby circumvent capital regulation.
Revised:  A serious deficiency of V@R is that firms can hide their total downside risk in corporate networks, unless a consolidated solvency balance sheet is required for each economic scenario. In this case, they can largely reduce their total capital requirements via appropriate transfer agreements within a group structure consisting of sufficiently many entities and thereby circumvent capital regulation.
Edit intent: meaning-changed
Original:  We prove several versions of such a result for general distortion risk measures of V@R-type, explicitly construct suitable allocations of the group portfolio, and finally demonstrate how these findings can be extended beyond distortion risk measures  .
Revised:  We prove several versions of such a result for general distortion risk measures of V@R-type, explicitly construct suitable allocations of the network portfolio, and finally demonstrate how these findings can be extended beyond distortion risk measures .
Edit intent: clarity