wanyu/IteraTeR_full_sent huggingface dataset:
Original:  More generally, there are inherent bounds on the complexity of control networks based solely on transcription factors. I show that given n transcription factor genes in a genome and address combinations of length k then there are at most n/k k-length TF-addresses in the address space.
Revised:  It is proven that given n transcription factor genes in a genome and address combinations of length k then there are at most n/k k-length TF-addresses in the address space.
Edit intent: clarity
Original:  Peptide mass spectrometry is a powerful tool for detecting cellular expression of proteins and therefore is an attractive approach for verifying the protein coding potential of genes. However, a range of technical difficulties limit the coverage from proteomics experiments, with the highest recorded coverage of the human proteome being approximately 50\% of human genes .
Revised:  Peptide mass spectrometry is a powerful tool for detecting cellular expression of proteins and therefore is an attractive approach for verifying the protein coding potential is the detection of cellular protein expression through peptide mass spectrometry experiments .
Edit intent: clarity
Original:  Here we map the peptides detected in 7 large-scale proteomics studies to the GENCODE v12 annotation of the human genome and identify almost 60\% of the protein coding genes  .
Revised:  Here we map the peptides detected in 7 large-scale proteomics studies to the GENCODE v12 annotation of the human genome and identify almost 60\% of the protein coding genes in the GENCODE annotation the human genome .
Edit intent: meaning-changed
Original:  We find that there are surprisingly strong correlations between peptide detection and cross-species conservation, gene age and the presence of protein-like features. The age of the gene  and its conservation across vertebrate species are key indicators of whether a peptide will be detected in proteomics experiments.
Revised:  We find the age of the gene and its conservation across vertebrate species are key indicators of whether a peptide will be detected in proteomics experiments.
Edit intent: clarity
Original:  At the same time there is little or no evidence for protein expression for genes that have appeared since primates or that do not have any protein-like features or conservation. Based on our results we describe a set of 2,001 genes that have no protein features and poor conservation, or have ambiguous annotations in gene or protein databases.
Revised:  At the same time there is little or no evidence for protein expression for genes that have appeared since primates or that do not have any protein-like features or cross-species conservation. We identify 19 non-protein like features such as weak conservation, no protein-like features or ambiguous annotations in the major databases that are indicators of low peptide detection rates. We use these features to describe a set of 2,001 genes that have no protein features and poor conservation, or have ambiguous annotations in gene or protein databases.
Edit intent: meaning-changed
Original:  Based on our results we describe a set of 2,001 genes that have no protein features and poor conservation, or have ambiguous annotations in gene or protein databases. We suggest that many of the genes that lack supporting evidence and that are not detected in proteomics experiments, do not code for proteins under normal circumstances and that they should not be included in the human protein coding gene catalogue.
Revised:  Based on our results we describe a set of 2,001 genes that are potentially non-coding, and show that many of these genes behave more like non-coding genes than protein-coding genes. We detect peptides for just 3\% of these genes. We suggest that many of the genes that lack supporting evidence and that are not detected in proteomics experiments, do not code for proteins under normal circumstances and that they should not be included in the human protein coding gene catalogue.
Edit intent: meaning-changed
Original:  Here we have explored underlying structures of different biological networks which support faster spreading  and are better in communication between nodes in them. In this regard, we have analyzed the good expansion property , from large spectral gap , and communicability between nodes in those networks . Different epidemic models are also used to study the same.
Revised:  Here we have explored underlying structures of different biological networks which support faster spreading and are better in communication . We analyze the good expansion property , from large spectral gap , and communicability between nodes in those networks . Different epidemic models are also used to study the same.
Edit intent: coherence
Original:  In this regard, we have analyzed the good expansion property , from large spectral gap , and communicability between nodes in those networks . Different epidemic models are also used to study the same. Moreover we have explored the structural conformation and properties which might be cause for better communication.
Revised:  In this regard, we have analyzed the good expansion property , from large spectral gap , and communicability between nodes in those networks . Different epidemic models are also used to study the transmission of information in terms of disease spreading through individuals (nodes) in those networks. More- over, we explore the structural conformation and properties which might be cause for better communication.
Edit intent: meaning-changed
Original:   Our study shows that the underlying topology in neural networks is significantly qualitatively different than the same from other biological networks and  they may have evolved  such a way that they inherit a  structure which is excellent and robust in communication.
Revised:  Among all biological networks studied here, the undirected structure of neuronal networks not only pos- sesses the small-world property but the same is expressed remarkably to a higher degree than any randomly generated network which possesses the same degree sequence. A relatively high percentage of nodes, in neuronal networks, form a higher core in their structure. Our study shows that the underlying topology in neural networks is significantly qualitatively different than the same from other biological networks and they may have evolved such a way that they inherit a structure which is excellent and robust in communication.
Edit intent: meaning-changed
Original:   Our study shows that the underlying topology in neural networks is significantly qualitatively different than the same from other biological networks and  they may have evolved  such a way that they inherit a  structure which is excellent and robust in communication.
Revised:  Our study shows that the underlying undirected topology in neuronal networks is significantly qualitatively different than the same from other biological networks and they may have evolved such a way that they inherit a structure which is excellent and robust in communication.
Edit intent: meaning-changed
Original:   Our study shows that the underlying topology in neural networks is significantly qualitatively different than the same from other biological networks and  they may have evolved  such a way that they inherit a  structure which is excellent and robust in communication.
Revised:  Our study shows that the underlying topology in neural networks is significantly qualitatively different than the same from other biological networks and that they may have evolved such a way that they inherit a structure which is excellent and robust in communication.
Edit intent: fluency
Original:   Our study shows that the underlying topology in neural networks is significantly qualitatively different than the same from other biological networks and  they may have evolved  such a way that they inherit a  structure which is excellent and robust in communication.
Revised:  Our study shows that the underlying topology in neural networks is significantly qualitatively different than the same from other biological networks and they may have evolved in such a way that they inherit a structure which is excellent and robust in communication.
Edit intent: coherence
Original:   Our study shows that the underlying topology in neural networks is significantly qualitatively different than the same from other biological networks and  they may have evolved  such a way that they inherit a  structure which is excellent and robust in communication.
Revised:  Our study shows that the underlying topology in neural networks is significantly qualitatively different than the same from other biological networks and they may have evolved such a way that they inherit a (undirected) structure which is excellent and robust in communication.
Edit intent: meaning-changed
Original:  Since recently it is possible to quantify SR in terms of underlying financial networks where nodes represent financial institutions, and links capture the size and maturity of assets (loans), liabilities, and other obligations  such as derivatives.
Revised:  It has recently become possible to quantify SR in terms of underlying financial networks where nodes represent financial institutions, and links capture the size and maturity of assets (loans), liabilities, and other obligations such as derivatives.
Edit intent: clarity
Original:  Since recently it is possible to quantify SR in terms of underlying financial networks where nodes represent financial institutions, and links capture the size and maturity of assets (loans), liabilities, and other obligations  such as derivatives.
Revised:  Since recently it is possible to quantify SR in terms of underlying financial networks where nodes represent financial institutions, and links capture the size and maturity of assets (loans), liabilities, and other obligations , such as derivatives.
Edit intent: fluency
Original:  We use empirical data of nation-wide interbank liabilities to show that a few liabilities carry the major fraction of the overall SR . We propose a tax on individual transactions that is proportional to their  contribution to overall SR.
Revised:  We use empirical data of nationwide interbank liabilities to show that a few liabilities carry the major fraction of the overall SR . We propose a tax on individual transactions that is proportional to their contribution to overall SR.
Edit intent: fluency
Original:  We use empirical data of nation-wide interbank liabilities to show that a few liabilities carry the major fraction of the overall SR . We propose a tax on individual transactions that is proportional to their  contribution to overall SR.
Revised:  We use empirical data of nation-wide interbank liabilities to show that the marginal contribution to overall SR of liabilities for a given size varies by a factor of a thousand . We propose a tax on individual transactions that is proportional to their contribution to overall SR.
Edit intent: meaning-changed
Original:  We use empirical data of nation-wide interbank liabilities to show that a few liabilities carry the major fraction of the overall SR . We propose a tax on individual transactions that is proportional to their  contribution to overall SR.
Revised:  We use empirical data of nation-wide interbank liabilities to show that a few liabilities carry the major fraction of the overall SR . We propose a tax on individual transactions that is proportional to their marginal contribution to overall SR.
Edit intent: meaning-changed
Original:  With an agent based model (CRISIS macro-financial model) we demonstrate that the proposed  Systemic Risk Tax  (SRT) leads to a URLanized re-structuring of financial networks that are practically free of SR. ABM predictions agree remarkably well with the empirical data and can be used to understand the relation of credit risk and SR.
Revised:  With an agent-based model (CRISIS macro-financial model) we demonstrate that the proposed Systemic Risk Tax (SRT) leads to a URLanized re-structuring of financial networks that are practically free of SR. ABM predictions agree remarkably well with the empirical data and can be used to understand the relation of credit risk and SR.
Edit intent: fluency
Original:  With an agent based model (CRISIS macro-financial model) we demonstrate that the proposed  Systemic Risk Tax  (SRT) leads to a URLanized re-structuring of financial networks that are practically free of SR. ABM predictions agree remarkably well with the empirical data and can be used to understand the relation of credit risk and SR.
Revised:  With an agent based model (CRISIS macro-financial model) we demonstrate that the proposed " Systemic Risk Tax (SRT) leads to a URLanized re-structuring of financial networks that are practically free of SR. ABM predictions agree remarkably well with the empirical data and can be used to understand the relation of credit risk and SR.
Edit intent: fluency
Original:  With an agent based model (CRISIS macro-financial model) we demonstrate that the proposed  Systemic Risk Tax  (SRT) leads to a URLanized re-structuring of financial networks that are practically free of SR. ABM predictions agree remarkably well with the empirical data and can be used to understand the relation of credit risk and SR.
Revised:  With an agent based model (CRISIS macro-financial model) we demonstrate that the proposed Systemic Risk Tax " (SRT) leads to a URLanized re-structuring of financial networks that are practically free of SR. ABM predictions agree remarkably well with the empirical data and can be used to understand the relation of credit risk and SR.
Edit intent: fluency
Original:  With an agent based model (CRISIS macro-financial model) we demonstrate that the proposed  Systemic Risk Tax  (SRT) leads to a URLanized re-structuring of financial networks that are practically free of SR. ABM predictions agree remarkably well with the empirical data and can be used to understand the relation of credit risk and SR.
Revised:  With an agent based model (CRISIS macro-financial model) we demonstrate that the proposed Systemic Risk Tax (SRT) leads to a URLanised restructuring of financial networks that are practically free of SR. ABM predictions agree remarkably well with the empirical data and can be used to understand the relation of credit risk and SR.
Edit intent: clarity
Original:  With an agent based model (CRISIS macro-financial model) we demonstrate that the proposed  Systemic Risk Tax  (SRT) leads to a URLanized re-structuring of financial networks that are practically free of SR. ABM predictions agree remarkably well with the empirical data and can be used to understand the relation of credit risk and SR.
Revised:  With an agent based model (CRISIS macro-financial model) we demonstrate that the proposed Systemic Risk Tax (SRT) leads to a URLanized re-structuring of financial networks that are practically free of SR. The SRT can be seen as an insurance for the public against costs arising from cascading failure. ABM predictions are shown to be in remarkable agreement with the empirical data and can be used to understand the relation of credit risk and SR.
Edit intent: meaning-changed
Original: It has been understood that the `` local" existence of the Markowitz' optimal portfolio or the solution to the local risk minimization problem is guaranteed by some specific mathematical structures on the underlying assets price processes (called ``Structure Conditions" in the literature ){\it   .
Revised: It has been understood that the " local" existence of the Markowitz' optimal portfolio or the solution to the local risk minimization problem is guaranteed by some specific mathematical structures on the underlying assets price processes (called ``Structure Conditions" in the literature ){\it .
Edit intent: fluency
Original: It has been understood that the `` local" existence of the Markowitz' optimal portfolio or the solution to the local risk minimization problem is guaranteed by some specific mathematical structures on the underlying assets price processes (called ``Structure Conditions" in the literature ){\it   .
Revised: It has been understood that the `` local" existence of the Markowitz' optimal portfolio or the solution to the local-risk minimization problem is guaranteed by some specific mathematical structures on the underlying assets price processes (called ``Structure Conditions" in the literature ){\it .
Edit intent: fluency
Original: It has been understood that the `` local" existence of the Markowitz' optimal portfolio or the solution to the local risk minimization problem is guaranteed by some specific mathematical structures on the underlying assets price processes (called ``Structure Conditions" in the literature ){\it   .
Revised: It has been understood that the `` local" existence of the Markowitz' optimal portfolio or the solution to the local risk minimization problem is guaranteed by some specific mathematical structures on the underlying assets price processes known in the literature ){\it .
Edit intent: clarity
Original: It has been understood that the `` local" existence of the Markowitz' optimal portfolio or the solution to the local risk minimization problem is guaranteed by some specific mathematical structures on the underlying assets price processes (called ``Structure Conditions" in the literature ){\it   .
Revised: It has been understood that the `` local" existence of the Markowitz' optimal portfolio or the solution to the local risk minimization problem is guaranteed by some specific mathematical structures on the underlying assets price processes (called ``Structure Conditions" in the literature as "{\it .
Edit intent: fluency
Original: It has been understood that the `` local" existence of the Markowitz' optimal portfolio or the solution to the local risk minimization problem is guaranteed by some specific mathematical structures on the underlying assets price processes (called ``Structure Conditions" in the literature ){\it   .
Revised: It has been understood that the `` local" existence of the Markowitz' optimal portfolio or the solution to the local risk minimization problem is guaranteed by some specific mathematical structures on the underlying assets price processes (called ``Structure Conditions" in the literature ){\it Structure Conditions .
Edit intent: meaning-changed
Original: It has been understood that the `` local" existence of the Markowitz' optimal portfolio or the solution to the local risk minimization problem is guaranteed by some specific mathematical structures on the underlying assets price processes (called ``Structure Conditions" in the literature ){\it   .
Revised: It has been understood that the `` local" existence of the Markowitz' optimal portfolio or the solution to the local risk minimization problem is guaranteed by some specific mathematical structures on the underlying assets price processes (called ``Structure Conditions" in the literature ){\it " .
Edit intent: fluency
Original:  In this paper, we consider a semi-martingale market model (initial market model) fulfilling these structures , and an arbitrary random time that is not adapted to the  flow of the ``public" information.
Revised:  In this paper, we consider a semi-martingale market model (initial market model) fulfilling these structures , and an arbitrary random time that is not adapted to the information flow of the ``public" information.
Edit intent: clarity
Original:  In this paper, we consider a semi-martingale market model (initial market model) fulfilling these structures , and an arbitrary random time that is not adapted to the  flow of the ``public" information.
Revised:  In this paper, we consider a semi-martingale market model (initial market model) fulfilling these structures , and an arbitrary random time that is not adapted to the flow of the market model. This random time may model the default time of a firm, the death time of an insured, or any the occurrence time of an event that might impact the market model somehow.
Edit intent: meaning-changed
Original:  More precisely, we first specialize the optimal transport plan introduced in \mbox{%DIFAUXCMD BeiglJuil0pt%DIFAUXCMD , following the construction of \mbox{%DIFAUXCMD BrenierMartingale}0pt%DIFAUXCMD , }  as well as the one 0pt%DIFAUXCMD and further studied in \mbox{%DIFAUXCMD BrenierMartingale}\hspace{0pt}%DIFAUXCMD . We show that, } in \mbox{%DIFAUXCMD \cite{HobsonKlimmek2013}\hspace{0pt}%DIFAUXCMD , to } the case of positive martingales and a single maximizer for the difference between the c.d.f.'
Revised:  In particular, we consider the optimal transport plan introduced in \mbox{%DIFAUXCMD BeiglJuil0pt%DIFAUXCMD , following the construction of \mbox{%DIFAUXCMD BrenierMartingale}0pt%DIFAUXCMD , } as well as the one 0pt%DIFAUXCMD and further studied in \mbox{%DIFAUXCMD BrenierMartingale}\hspace{0pt}%DIFAUXCMD . We show that, } in \mbox{%DIFAUXCMD \cite{HobsonKlimmek2013}\hspace{0pt}%DIFAUXCMD , to } the case of positive martingales and a single maximizer for the difference between the c.d.f.'
Edit intent: coherence
Original:  we first specialize the optimal transport plan introduced in \mbox{%DIFAUXCMD BeiglJuil0pt%DIFAUXCMD , following the construction of \mbox{%DIFAUXCMD BrenierMartingale}0pt%DIFAUXCMD , }  as well as the one 0pt%DIFAUXCMD and further studied in \mbox{%DIFAUXCMD BrenierMartingale}\hspace{0pt}%DIFAUXCMD . We show that, } in \mbox{%DIFAUXCMD \cite{HobsonKlimmek2013}\hspace{0pt}%DIFAUXCMD , to } the case of positive martingales and a single maximizer for the difference between the c.d.f.'
Revised:  we first specialize the optimal transport plan 0pt%DIFAUXCMD , following the construction of \mbox{%DIFAUXCMD BrenierMartingale}0pt%DIFAUXCMD , } as well as the one 0pt%DIFAUXCMD and further studied in \mbox{%DIFAUXCMD BrenierMartingale}\hspace{0pt}%DIFAUXCMD . We show that, } in \mbox{%DIFAUXCMD \cite{HobsonKlimmek2013}\hspace{0pt}%DIFAUXCMD , to } the case of positive martingales and a single maximizer for the difference between the c.d.f.'
Edit intent: clarity
Original:  we first specialize the optimal transport plan introduced in \mbox{%DIFAUXCMD BeiglJuil0pt%DIFAUXCMD , following the construction of \mbox{%DIFAUXCMD BrenierMartingale}0pt%DIFAUXCMD , }  as well as the one 0pt%DIFAUXCMD and further studied in \mbox{%DIFAUXCMD BrenierMartingale}\hspace{0pt}%DIFAUXCMD . We show that, } in \mbox{%DIFAUXCMD \cite{HobsonKlimmek2013}\hspace{0pt}%DIFAUXCMD , to } the case of positive martingales and a single maximizer for the difference between the c.d.f.'
Revised:  we first specialize the optimal transport plan introduced in \mbox{%DIFAUXCMD BeiglJuil0pt%DIFAUXCMD , following the construction of \mbox{%DIFAUXCMD BrenierMartingale}0pt%DIFAUXCMD , } constructed in \mbox{%DIFAUXCMD HobsonKlimmek2013 as well as the one 0pt%DIFAUXCMD and further studied in \mbox{%DIFAUXCMD BrenierMartingale}\hspace{0pt}%DIFAUXCMD . We show that, } in \mbox{%DIFAUXCMD \cite{HobsonKlimmek2013}\hspace{0pt}%DIFAUXCMD , to } the case of positive martingales and a single maximizer for the difference between the c.d.f.'
Edit intent: clarity
Original:  we first specialize the optimal transport plan introduced in \mbox{%DIFAUXCMD BeiglJuil0pt%DIFAUXCMD , following the construction of \mbox{%DIFAUXCMD BrenierMartingale}0pt%DIFAUXCMD , }  as well as the one 0pt%DIFAUXCMD and further studied in \mbox{%DIFAUXCMD BrenierMartingale}\hspace{0pt}%DIFAUXCMD . We show that, } in \mbox{%DIFAUXCMD \cite{HobsonKlimmek2013}\hspace{0pt}%DIFAUXCMD , to } the case of positive martingales and a single maximizer for the difference between the c.d.f.'
Revised:  we first specialize the optimal transport plan introduced in \mbox{%DIFAUXCMD BeiglJuil0pt%DIFAUXCMD , following the construction of \mbox{%DIFAUXCMD BrenierMartingale}0pt%DIFAUXCMD , } as well as the one introduced in \mbox{%DIFAUXCMD BeiglJuil0pt%DIFAUXCMD and further studied in \mbox{%DIFAUXCMD BrenierMartingale}\hspace{0pt}%DIFAUXCMD . We show that, } in \mbox{%DIFAUXCMD \cite{HobsonKlimmek2013}\hspace{0pt}%DIFAUXCMD , to } the case of positive martingales and a single maximizer for the difference between the c.d.f.'
Edit intent: fluency