Upload README.md with huggingface_hub
Browse files
README.md
ADDED
|
@@ -0,0 +1,253 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
dataset_info:
|
| 3 |
+
features:
|
| 4 |
+
- name: '#genome'
|
| 5 |
+
dtype: string
|
| 6 |
+
- name: asm_name
|
| 7 |
+
dtype: string
|
| 8 |
+
- name: assembly_accession
|
| 9 |
+
dtype: string
|
| 10 |
+
- name: bioproject
|
| 11 |
+
dtype: string
|
| 12 |
+
- name: biosample
|
| 13 |
+
dtype: string
|
| 14 |
+
- name: wgs_master
|
| 15 |
+
dtype: float64
|
| 16 |
+
- name: seq_rel_date
|
| 17 |
+
dtype: string
|
| 18 |
+
- name: submitter
|
| 19 |
+
dtype: string
|
| 20 |
+
- name: ftp_path
|
| 21 |
+
dtype: string
|
| 22 |
+
- name: img_id
|
| 23 |
+
dtype: float64
|
| 24 |
+
- name: gtdb_id
|
| 25 |
+
dtype: string
|
| 26 |
+
- name: scope
|
| 27 |
+
dtype: string
|
| 28 |
+
- name: assembly_level
|
| 29 |
+
dtype: string
|
| 30 |
+
- name: genome_rep
|
| 31 |
+
dtype: string
|
| 32 |
+
- name: refseq_category
|
| 33 |
+
dtype: string
|
| 34 |
+
- name: release_type
|
| 35 |
+
dtype: string
|
| 36 |
+
- name: taxid
|
| 37 |
+
dtype: float64
|
| 38 |
+
- name: species_taxid
|
| 39 |
+
dtype: float64
|
| 40 |
+
- name: organism_name
|
| 41 |
+
dtype: string
|
| 42 |
+
- name: infraspecific_name
|
| 43 |
+
dtype: string
|
| 44 |
+
- name: isolate
|
| 45 |
+
dtype: string
|
| 46 |
+
- name: superkingdom
|
| 47 |
+
dtype: string
|
| 48 |
+
- name: phylum
|
| 49 |
+
dtype: string
|
| 50 |
+
- name: class
|
| 51 |
+
dtype: string
|
| 52 |
+
- name: order
|
| 53 |
+
dtype: string
|
| 54 |
+
- name: family
|
| 55 |
+
dtype: string
|
| 56 |
+
- name: genus
|
| 57 |
+
dtype: string
|
| 58 |
+
- name: species
|
| 59 |
+
dtype: string
|
| 60 |
+
- name: classified
|
| 61 |
+
dtype: bool
|
| 62 |
+
- name: lv1_group
|
| 63 |
+
dtype: string
|
| 64 |
+
- name: lv2_group
|
| 65 |
+
dtype: string
|
| 66 |
+
- name: score_faa
|
| 67 |
+
dtype: float64
|
| 68 |
+
- name: score_fna
|
| 69 |
+
dtype: float64
|
| 70 |
+
- name: score_rrna
|
| 71 |
+
dtype: float64
|
| 72 |
+
- name: score_trna
|
| 73 |
+
dtype: float64
|
| 74 |
+
- name: total_length
|
| 75 |
+
dtype: float64
|
| 76 |
+
- name: contigs
|
| 77 |
+
dtype: float64
|
| 78 |
+
- name: gc
|
| 79 |
+
dtype: float64
|
| 80 |
+
- name: n50
|
| 81 |
+
dtype: float64
|
| 82 |
+
- name: l50
|
| 83 |
+
dtype: float64
|
| 84 |
+
- name: proteins
|
| 85 |
+
dtype: float64
|
| 86 |
+
- name: protein_length
|
| 87 |
+
dtype: float64
|
| 88 |
+
- name: coding_density
|
| 89 |
+
dtype: float64
|
| 90 |
+
- name: completeness
|
| 91 |
+
dtype: float64
|
| 92 |
+
- name: contamination
|
| 93 |
+
dtype: float64
|
| 94 |
+
- name: strain_heterogeneity
|
| 95 |
+
dtype: float64
|
| 96 |
+
- name: markers
|
| 97 |
+
dtype: float64
|
| 98 |
+
- name: 5s_rrna
|
| 99 |
+
dtype: string
|
| 100 |
+
- name: 16s_rrna
|
| 101 |
+
dtype: string
|
| 102 |
+
- name: 23s_rrna
|
| 103 |
+
dtype: string
|
| 104 |
+
- name: trnas
|
| 105 |
+
dtype: float64
|
| 106 |
+
- name: draft_quality
|
| 107 |
+
dtype: string
|
| 108 |
+
- name: start_position
|
| 109 |
+
dtype: int64
|
| 110 |
+
- name: human_label
|
| 111 |
+
dtype: int64
|
| 112 |
+
- name: autotrain_text
|
| 113 |
+
dtype: string
|
| 114 |
+
- name: autotrain_label
|
| 115 |
+
dtype:
|
| 116 |
+
class_label:
|
| 117 |
+
names:
|
| 118 |
+
'0': Acetobacter pasteurianus IFO 3283-01 IFO 3283 substr. IFO 3283-01
|
| 119 |
+
'1': Alcanivorax borkumensis SK2
|
| 120 |
+
'2': Aquifex aeolicus VF5
|
| 121 |
+
'3': Archaeoglobus fulgidus DSM 4304
|
| 122 |
+
'4': Azorhizobium caulinodans ORS 571
|
| 123 |
+
'5': Bacillus anthracis str. Ames
|
| 124 |
+
'6': Bacillus anthracis str. Sterne ASM816v1
|
| 125 |
+
'7': Bacillus cereus ATCC 14579
|
| 126 |
+
'8': Bacillus clausii KSM-K16
|
| 127 |
+
'9': Bacillus pseudofirmus OF4
|
| 128 |
+
'10': Bacteroides fragilis YCH46
|
| 129 |
+
'11': Bacteroides thetaiotaomicron VPI-5482
|
| 130 |
+
'12': Bifidobacterium adolescentis ATCC 15703
|
| 131 |
+
'13': Bifidobacterium longum NCC2705
|
| 132 |
+
'14': Borrelia burgdorferi B31
|
| 133 |
+
'15': Brevibacillus brevis NBRC 100599
|
| 134 |
+
'16': Buchnera aphidicola str. Bp (Baizongia pistaciae)
|
| 135 |
+
'17': Buchnera aphidicola str. Sg (Schizaphis graminum) Sg
|
| 136 |
+
'18': Caldanaerobacter subterraneus subsp. tengcongensis MB4
|
| 137 |
+
'19': Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
|
| 138 |
+
'20': Candidatus Vesicomyosocius okutanii HA
|
| 139 |
+
'21': Chlamydia felis Fe/C-56
|
| 140 |
+
'22': Chlamydia trachomatis D/UW-3/CX
|
| 141 |
+
'23': Chlamydophila caviae GPIC
|
| 142 |
+
'24': Chlamydophila pneumoniae CWL029
|
| 143 |
+
'25': Chlamydophila pneumoniae TW-183
|
| 144 |
+
'26': Chlorobium tepidum TLS
|
| 145 |
+
'27': Chromobacterium violaceum ATCC 12472
|
| 146 |
+
'28': Clostridioides difficile 630 ASM920v1
|
| 147 |
+
'29': Clostridium acetobutylicum ATCC 824
|
| 148 |
+
'30': Clostridium tetani E88 Massachusetts substr. E88
|
| 149 |
+
'31': Corynebacterium jeikeium K411 K411 = NCTC 11915
|
| 150 |
+
'32': Coxiella burnetii RSA 493 ASM776v1
|
| 151 |
+
'33': Deferribacter desulfuricans SSM1
|
| 152 |
+
'34': Dehalococcoides mccartyi CBDB1
|
| 153 |
+
'35': Deinococcus radiodurans R1 ASM856v1
|
| 154 |
+
'36': Desulfovibrio magneticus RS-1
|
| 155 |
+
'37': Enterococcus faecalis V583 ASM778v1
|
| 156 |
+
'38': Escherichia coli O157:H7 str. Sakai Sakai substr. RIMD 0509952
|
| 157 |
+
'39': Finegoldia magna ATCC 29328
|
| 158 |
+
'40': Francisella tularensis subsp. holarctica LVS ASM924v1
|
| 159 |
+
'41': Fusobacterium nucleatum subsp. nucleatum ATCC 25586
|
| 160 |
+
'42': Gemmatimonas aurantiaca T-27
|
| 161 |
+
'43': Geobacter sulfurreducens PCA
|
| 162 |
+
'44': Haemophilus ducreyi 35000HP
|
| 163 |
+
'45': Haloquadratum walsbyi DSM 16790 DSM 16790 = HBSQ001
|
| 164 |
+
'46': Helicobacter acinonychis str. Sheeba
|
| 165 |
+
'47': Helicobacter hepaticus ATCC 51449
|
| 166 |
+
'48': Helicobacter pylori 26695 ASM852v1
|
| 167 |
+
'49': Hydrogenobacter thermophilus TK-6 ASM1078v1
|
| 168 |
+
'50': Idiomarina loihiensis L2TR
|
| 169 |
+
'51': Kocuria rhizophila DC2201
|
| 170 |
+
'52': Lactobacillus fermentum IFO 3956
|
| 171 |
+
'53': Lactobacillus salivarius UCC118
|
| 172 |
+
'54': Lactococcus lactis subsp. lactis Il1403 IL1403
|
| 173 |
+
'55': Macrococcus caseolyticus JCSC5402
|
| 174 |
+
'56': Magnetospirillum magneticum AMB-1
|
| 175 |
+
'57': Mannheimia succiniciproducens MBEL55E
|
| 176 |
+
'58': Methanocella paludicola SANAE
|
| 177 |
+
'59': Methanococcus voltae A3
|
| 178 |
+
'60': Methanopyrus kandleri AV19
|
| 179 |
+
'61': Methanosarcina acetivorans C2A
|
| 180 |
+
'62': Methanothermobacter thermautotrophicus str. Delta H
|
| 181 |
+
'63': Methylococcus capsulatus str. Bath
|
| 182 |
+
'64': Microcystis aeruginosa NIES-843
|
| 183 |
+
'65': Mycobacterium avium subsp. paratuberculosis K-10
|
| 184 |
+
'66': Neisseria gonorrhoeae FA 1090
|
| 185 |
+
'67': Neisseria meningitidis MC58
|
| 186 |
+
'68': Nitratiruptor sp. SB155-2 ASM1032v1
|
| 187 |
+
'69': Nitrosomonas europaea ATCC 19718
|
| 188 |
+
'70': Nostoc sp. PCC 7120 ASM970v1
|
| 189 |
+
'71': Onion yellows phytoplasma OY-M onion yellows
|
| 190 |
+
'72': Orientia tsutsugamushi str. Ikeda
|
| 191 |
+
'73': Pelotomaculum thermopropionicum SI
|
| 192 |
+
'74': Picrophilus torridus DSM 9790
|
| 193 |
+
'75': Porphyromonas gingivalis ATCC 33277
|
| 194 |
+
'76': Prochlorococcus marinus subsp. marinus str. CCMP1375
|
| 195 |
+
'77': Propionibacterium acnes KPA171202
|
| 196 |
+
'78': Pseudomonas putida KT2440
|
| 197 |
+
'79': Pyrobaculum aerophilum str. IM2
|
| 198 |
+
'80': Pyrococcus furiosus DSM 3638
|
| 199 |
+
'81': Ralstonia solanacearum GMI1000
|
| 200 |
+
'82': Rickettsia conorii str. Malish 7
|
| 201 |
+
'83': Rickettsia typhi str. Wilmington
|
| 202 |
+
'84': Rothia mucilaginosa DY-18
|
| 203 |
+
'85': Shigella flexneri 2a str. 301
|
| 204 |
+
'86': Sinorhizobium meliloti 1021
|
| 205 |
+
'87': Sodalis glossinidius str. 'morsitans' morsitans
|
| 206 |
+
'88': Staphylococcus epidermidis ATCC 12228 ASM764v1
|
| 207 |
+
'89': Staphylococcus haemolyticus JCSC1435
|
| 208 |
+
'90': Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 ASM1012v1
|
| 209 |
+
'91': Streptococcus agalactiae 2603V/R
|
| 210 |
+
'92': Streptococcus mutans UA159
|
| 211 |
+
'93': Streptococcus pyogenes M1 GAS SF370
|
| 212 |
+
'94': Streptococcus uberis 0140J
|
| 213 |
+
'95': Streptomyces avermitilis MA-4680 = NBRC 14893 MA-4680 ASM976v2
|
| 214 |
+
'96': Streptomyces griseus subsp. griseus NBRC 13350
|
| 215 |
+
'97': Sulfolobus solfataricus P2
|
| 216 |
+
'98': Sulfurovum sp. NBC37-1 ASM1034v1
|
| 217 |
+
'99': Symbiobacterium thermophilum IAM 14863 IAM14863
|
| 218 |
+
'100': Synechococcus elongatus PCC 6301
|
| 219 |
+
'101': Synechocystis sp. PCC 6803 ASM972v1
|
| 220 |
+
'102': Thermococcus kodakarensis KOD1
|
| 221 |
+
'103': Thermotoga maritima MSB8 ASM854v1
|
| 222 |
+
'104': Treponema denticola ATCC 35405
|
| 223 |
+
'105': Treponema pallidum subsp. pallidum str. Nichols ASM860v1
|
| 224 |
+
'106': Tropheryma whipplei str. Twist
|
| 225 |
+
'107': Vibrio cholerae O1 biovar El Tor str. N16961
|
| 226 |
+
'108': Vibrio vulnificus YJ016
|
| 227 |
+
'109': Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
|
| 228 |
+
'110': Wolbachia endosymbiont of Drosophila melanogaster wMel
|
| 229 |
+
'111': Wolbachia endosymbiont strain TRS of Brugia malayi
|
| 230 |
+
'112': Xanthomonas campestris pv. campestris str. ATCC 33913
|
| 231 |
+
'113': Xanthomonas oryzae pv. oryzae KACC 10331
|
| 232 |
+
'114': Xylella fastidiosa 9a5c
|
| 233 |
+
'115': Yersinia enterocolitica subsp. enterocolitica 8081
|
| 234 |
+
'116': Yersinia pestis CO92 ASM906v1
|
| 235 |
+
'117': Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 ZM4
|
| 236 |
+
'118': '[Bacillus thuringiensis] serovar konkukian str. 97-27'
|
| 237 |
+
'119': '[Pseudomonas syringae] pv. tomato str. DC3000'
|
| 238 |
+
'120': homo sapiens
|
| 239 |
+
splits:
|
| 240 |
+
- name: train
|
| 241 |
+
num_bytes: 683959051
|
| 242 |
+
num_examples: 1000000
|
| 243 |
+
download_size: 143743824
|
| 244 |
+
dataset_size: 683959051
|
| 245 |
+
configs:
|
| 246 |
+
- config_name: default
|
| 247 |
+
data_files:
|
| 248 |
+
- split: train
|
| 249 |
+
path: data/train-*
|
| 250 |
+
---
|
| 251 |
+
# Dataset Card for "autotrain-data-species_classify"
|
| 252 |
+
|
| 253 |
+
[More Information needed](https://github.com/huggingface/datasets/blob/main/CONTRIBUTING.md#how-to-contribute-to-the-dataset-cards)
|