Update day_intervals_cohort_v22.py

day_intervals_cohort_v22.py

@@ -322,7 +322,7 @@ def extract_data(use_ICU:str, label:str, time:int, icd_code:str, root_dir,mimic_
         disease_label=disease_label,
         use_ICU=use_ICU
     )
-    #print("pts",pts.head())
+    print("v22 fin get_visit_pts")
     
     # cols to be extracted from get_case_ctrls
     cols = [group_col, visit_col, admit_col, disch_col, 'Age','gender','ethnicity','insurance','label']
@@ -339,13 +339,10 @@ def extract_data(use_ICU:str, label:str, time:int, icd_code:str, root_dir,mimic_
     
     if use_ICU:
         cols.append(adm_visit_col)
-    #print(cohort.head())
+    print('saving summary')
     
     if use_disease:
         hids=disease_cohort.extract_diag_cohort(cohort['hadm_id'],icd_code,mimic_path)
-        #print(hids.shape)
-        #print(cohort.shape)
-        #print(len(list(set(hids['hadm_id'].unique()).intersection(set(cohort['hadm_id'].unique())))))
         cohort=cohort[cohort['hadm_id'].isin(hids['hadm_id'])]
         cohort_output=cohort_output+"_"+icd_code
         summary_output=summary_output+"_"+icd_code