thbndi commited on
Commit
16ec004
1 Parent(s): b1df3de

Update Mimic4Dataset.py

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Files changed (1) hide show
  1. Mimic4Dataset.py +5 -8
Mimic4Dataset.py CHANGED
@@ -153,11 +153,8 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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  timeW = config['timeWindow']
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  self.timeW=int(timeW.split()[1])
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  self.bucket = config['timebucket']
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- if self.config.name =='Mortality':
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- self.wind = config['predW']
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- else :
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- self.wind =1
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- print(self.wind)
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  self.data_icu = config['icu_no_icu']=='ICU'
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  if self.data_icu:
@@ -447,12 +444,12 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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  demo=demo.drop(['label'],axis=1)
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  X= generate_ml(dyn_df,cond_df,demo,concat_cols,self.concat)
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  X=X.values.tolist()[0]
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-
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- size_concat = self.size_cond+ self.size_proc * ((self.timeW + self.wind)//self.bucket) + self.size_meds * ((self.timeW + self.wind)//self.bucket)+ self.size_out * ((self.timeW + self.wind)//self.bucket)+ self.size_chart * ((self.timeW + self.wind)//self.bucket)+ self.size_lab * ((self.timeW + self.wind)//self.bucket) + 4
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  size_aggreg = self.size_cond+ self.size_proc + self.size_meds+ self.size_out+ self.size_chart+ self.size_lab + 4
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  print('x: ', len(X))
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  print('size_concat: ', size_concat)
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- print('((self.timeW + self.wind)//self.bucket): ', ((self.timeW + self.wind)//self.bucket))
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  if ((self.concat and len(X)==size_concat) or ((not self.concat) and len(X)==size_aggreg)):
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  yield int(i), {
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  "label": label,
 
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  timeW = config['timeWindow']
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  self.timeW=int(timeW.split()[1])
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  self.bucket = config['timebucket']
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+ self.PredW = config['predW']
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+
 
 
 
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  self.data_icu = config['icu_no_icu']=='ICU'
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  if self.data_icu:
 
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  demo=demo.drop(['label'],axis=1)
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  X= generate_ml(dyn_df,cond_df,demo,concat_cols,self.concat)
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  X=X.values.tolist()[0]
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+ interv = ((self.timeW + self.PredW)//self.bucket) + (self.config.name != 'Mortality')
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+ size_concat = self.size_cond+ self.size_proc * interv + self.size_meds * interv+ self.size_out * interv+ self.size_chart *interv+ self.size_lab * interv + 4
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  size_aggreg = self.size_cond+ self.size_proc + self.size_meds+ self.size_out+ self.size_chart+ self.size_lab + 4
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  print('x: ', len(X))
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  print('size_concat: ', size_concat)
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+ print('interv: ', interv)
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  if ((self.concat and len(X)==size_concat) or ((not self.concat) and len(X)==size_aggreg)):
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  yield int(i), {
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  "label": label,