| """Helper functions for a standard streaming compression API""" |
|
|
| from zipfile import ZipFile |
|
|
| import fsspec.utils |
| from fsspec.spec import AbstractBufferedFile |
|
|
|
|
| def noop_file(file, mode, **kwargs): |
| return file |
|
|
|
|
| |
| |
| compr = {None: noop_file} |
|
|
|
|
| def register_compression(name, callback, extensions, force=False): |
| """Register an "inferable" file compression type. |
| |
| Registers transparent file compression type for use with fsspec.open. |
| Compression can be specified by name in open, or "infer"-ed for any files |
| ending with the given extensions. |
| |
| Args: |
| name: (str) The compression type name. Eg. "gzip". |
| callback: A callable of form (infile, mode, **kwargs) -> file-like. |
| Accepts an input file-like object, the target mode and kwargs. |
| Returns a wrapped file-like object. |
| extensions: (str, Iterable[str]) A file extension, or list of file |
| extensions for which to infer this compression scheme. Eg. "gz". |
| force: (bool) Force re-registration of compression type or extensions. |
| |
| Raises: |
| ValueError: If name or extensions already registered, and not force. |
| |
| """ |
| if isinstance(extensions, str): |
| extensions = [extensions] |
|
|
| |
| if name in compr and not force: |
| raise ValueError(f"Duplicate compression registration: {name}") |
|
|
| for ext in extensions: |
| if ext in fsspec.utils.compressions and not force: |
| raise ValueError(f"Duplicate compression file extension: {ext} ({name})") |
|
|
| compr[name] = callback |
|
|
| for ext in extensions: |
| fsspec.utils.compressions[ext] = name |
|
|
|
|
| def unzip(infile, mode="rb", filename=None, **kwargs): |
| if "r" not in mode: |
| filename = filename or "file" |
| z = ZipFile(infile, mode="w", **kwargs) |
| fo = z.open(filename, mode="w") |
| fo.close = lambda closer=fo.close: closer() or z.close() |
| return fo |
| z = ZipFile(infile) |
| if filename is None: |
| filename = z.namelist()[0] |
| return z.open(filename, mode="r", **kwargs) |
|
|
|
|
| register_compression("zip", unzip, "zip") |
|
|
| try: |
| from bz2 import BZ2File |
| except ImportError: |
| pass |
| else: |
| register_compression("bz2", BZ2File, "bz2") |
|
|
| try: |
| from isal import igzip |
|
|
| def isal(infile, mode="rb", **kwargs): |
| return igzip.IGzipFile(fileobj=infile, mode=mode, **kwargs) |
|
|
| register_compression("gzip", isal, "gz") |
| except ImportError: |
| from gzip import GzipFile |
|
|
| register_compression( |
| "gzip", lambda f, **kwargs: GzipFile(fileobj=f, **kwargs), "gz" |
| ) |
|
|
| try: |
| from lzma import LZMAFile |
|
|
| register_compression("lzma", LZMAFile, "lzma") |
| register_compression("xz", LZMAFile, "xz") |
| except ImportError: |
| pass |
|
|
| try: |
| import lzmaffi |
|
|
| register_compression("lzma", lzmaffi.LZMAFile, "lzma", force=True) |
| register_compression("xz", lzmaffi.LZMAFile, "xz", force=True) |
| except ImportError: |
| pass |
|
|
|
|
| class SnappyFile(AbstractBufferedFile): |
| def __init__(self, infile, mode, **kwargs): |
| import snappy |
|
|
| super().__init__( |
| fs=None, path="snappy", mode=mode.strip("b") + "b", size=999999999, **kwargs |
| ) |
| self.infile = infile |
| if "r" in mode: |
| self.codec = snappy.StreamDecompressor() |
| else: |
| self.codec = snappy.StreamCompressor() |
|
|
| def _upload_chunk(self, final=False): |
| self.buffer.seek(0) |
| out = self.codec.add_chunk(self.buffer.read()) |
| self.infile.write(out) |
| return True |
|
|
| def seek(self, loc, whence=0): |
| raise NotImplementedError("SnappyFile is not seekable") |
|
|
| def seekable(self): |
| return False |
|
|
| def _fetch_range(self, start, end): |
| """Get the specified set of bytes from remote""" |
| data = self.infile.read(end - start) |
| return self.codec.decompress(data) |
|
|
|
|
| try: |
| import snappy |
|
|
| snappy.compress(b"") |
| |
| |
| register_compression("snappy", SnappyFile, []) |
|
|
| except (ImportError, NameError, AttributeError): |
| pass |
|
|
| try: |
| import lz4.frame |
|
|
| register_compression("lz4", lz4.frame.open, "lz4") |
| except ImportError: |
| pass |
|
|
| try: |
| |
| from compression.zstd import ZstdFile |
|
|
| register_compression("zstd", ZstdFile, "zst") |
|
|
| except ImportError: |
| try: |
| import zstandard as zstd |
|
|
| def zstandard_file(infile, mode="rb"): |
| if "r" in mode: |
| cctx = zstd.ZstdDecompressor() |
| return cctx.stream_reader(infile) |
| else: |
| cctx = zstd.ZstdCompressor(level=10) |
| return cctx.stream_writer(infile) |
|
|
| register_compression("zstd", zstandard_file, "zst") |
| except ImportError: |
| pass |
|
|
|
|
| def available_compressions(): |
| """Return a list of the implemented compressions.""" |
| return list(compr) |
|
|