| nn: |
| model: GeometricTransformer |
| dataset: GeometricTransformerDataset |
| dtype: float32 |
| device: cuda |
| data_in_memory: false |
| load_model: null |
| batch_size: 128 |
| num_workers: 4 |
| collate_fn: geometric_transformer_collate_fn |
| model_args: |
| dim_model: 1536 |
| unified_transformer_args: |
| n_layers: 48 |
| geom_layer_indices: |
| - 0 |
| ida_layer_indices: [] |
| mha_layer_indices: |
| - 0 |
| - 1 |
| - 2 |
| - 3 |
| - 4 |
| - 5 |
| - 6 |
| - 7 |
| - 8 |
| - 9 |
| - 10 |
| - 11 |
| - 12 |
| - 13 |
| - 14 |
| - 15 |
| - 16 |
| - 17 |
| - 18 |
| - 19 |
| - 20 |
| - 21 |
| - 22 |
| - 23 |
| - 24 |
| - 25 |
| - 26 |
| - 27 |
| - 28 |
| - 29 |
| - 30 |
| - 31 |
| - 32 |
| - 33 |
| - 34 |
| - 35 |
| - 36 |
| - 37 |
| - 38 |
| - 39 |
| - 40 |
| - 41 |
| - 42 |
| - 43 |
| - 44 |
| - 45 |
| - 46 |
| - 47 |
| bias: false |
| mha_args: |
| num_heads: 24 |
| bias: false |
| qk_layernorm: true |
| gha_args: |
| num_heads: 256 |
| num_vector_messages: 1 |
| mask_and_zero_frameless: true |
| bias: false |
| scaling_factor: 1.1547005383792515 |
| ffn_type: swiglu |
| norm_type: layer_norm |
| expansion_ratio: 2.66666666667 |
| struc_token_info: |
| mask: 4096 |
| eos: 4097 |
| bos: 4098 |
| pad: 4099 |
| total: 5001 |
| max_non_special_token: 4095 |
| residue_token_info: |
| mask: 32 |
| eos: 2 |
| bos: 0 |
| pad: 1 |
| total: 33 |
| max_non_special_token: null |
| sasa_token_info: |
| mask: 0 |
| eos: 0 |
| bos: 0 |
| pad: 0 |
| total: null |
| max_non_special_token: null |
| sec_struct_token_info: |
| mask: 0 |
| eos: 0 |
| bos: 0 |
| pad: 0 |
| total: null |
| max_non_special_token: null |
| res_annot_token_info: |
| mask: 0 |
| eos: 0 |
| bos: 0 |
| pad: 0 |
| total: null |
| max_non_special_token: null |
| dataset_split_args: |
| train: 0.8 |
| val: 0.2 |
| test: 0.0 |
| train: |
| lightning_model: TransformerModel |
| resume_training_path: null |
| lightning_model_args: |
| eval_type: sft |
| beta: null |
| gamma: null |
| sampling_temperature: null |
| optimizer: Adam |
| optimizer_args: |
| lr: 0.0004 |
| betas: |
| - 0.9 |
| - 0.95 |
| weight_decay: 0.01 |
| lr_scheduler: LinearWarmupCosineAnnealingLR |
| lr_scheduler_args: |
| warmup_epochs: 250000 |
| max_epochs: 2500000 |
| eta_min: 4.0e-05 |
| interval: step |
| monitor: val/CELoss |
| sync_dist: true |
| on_step: true |
| trainer_args: |
| eval_type: era |
| accelerator: cuda |
| devices: 1 |
| strategy: auto |
| log_every_n_steps: 500 |
| max_epochs: 10000 |
| enable_progress_bar: false |
| gradient_clip_val: 1.0 |
| logger: |
| loggertype: TensorBoard |
| seed_args: |
| seed: 42 |
| workers: true |
| global_args: |
| dataset_filename: /scratch/group_scratch/era/directed_evolution/datasets/gb1/gb1_tokenized.h5 |
| keys_to_test: |
| - nn.model |
| - nn.model_args |
|
|
