Repository: pytorch
Issue: Embedding Pytorch in C++ using pybind fails on interpreter shutdown
Labels: module: crash,triaged,module: pybind,module: third_party

### 🐛 Describe the bug

Pybind crashes when it tries to clean up after PyTorch

The following minimal project reproduces this behavior:
https://github.com/Sleemanmunk/pybind_crash

## Prerequisites:
Python 3.x with Pytorch 1.7+
GCC 7.4.0 or 7.5.0 (4.8.5 does not present this bug, other versions are untested)

To reproduce:
  inside pybind_crash folder
  `bash run.sh`
  
  you can provide the directory of your preferred GCC's binaries as argument #1 to run.sh
  `bash run.sh /usr/local/bin/`

## Expected output (GCC 4.8.5):
```
(base) [root@1cf9dda33f79 pybind_crash]# bash run.sh
Cloning into 'pybind11'...
remote: Enumerating objects: 23430, done.
remote: Counting objects: 100% (1305/1305), done.
remote: Compressing objects: 100% (520/520), done.
remote: Total 23430 (delta 814), reused 1055 (delta 714), pack-reused 22125
Receiving objects: 100% (23430/23430), 8.57 MiB | 9.30 MiB/s, done.
Resolving deltas: 100% (16238/16238), done.
Updating files: 100% (236/236), done.
-- The C compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- pybind11 v2.10.0 dev1
-- Found PythonInterp: /deployment/envs/bert_sentiment/bin/python (found suitable version "3.9.7", minimum required is "3.6")
-- Found PythonLibs: /deployment/envs/bert_sentiment/lib/libpython3.9.so
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Configuring done
-- Generating done
-- Build files have been written to: /deployment/pybind_crash/build
make: Warning: File `Makefile' has modification time 0.5 s in the future
make[1]: Warning: File `CMakeFiles/Makefile2' has modification time 0.55 s in the future
make[2]: Warning: File `CMakeFiles/example.dir/flags.make' has modification time 0.4 s in the future
Scanning dependencies of target example
make[2]: warning:  Clock skew detected.  Your build may be incomplete.
make[2]: Warning: File `CMakeFiles/example.dir/depend.make' has modification time 0.54 s in the future
[ 50%] Building CXX object CMakeFiles/example.dir/main.cpp.o
[100%] Linking CXX executable example
make[2]: warning:  Clock skew detected.  Your build may be incomplete.
[100%] Built target example
make[1]: warning:  Clock skew detected.  Your build may be incomplete.
make: warning:  Clock skew detected.  Your build may be incomplete.
Pybind Version: v2.9.1
Python Version: 3.9.7
Torch Version: 1.10.2
```

## Observed output (GCC 7.5.0)
```
(base) [root@1cf9dda33f79 pybind_crash]# bash run.sh /usr/local/bin/
Cloning into 'pybind11'...
remote: Enumerating objects: 23430, done.
remote: Counting objects: 100% (1305/1305), done.
remote: Compressing objects: 100% (520/520), done.
remote: Total 23430 (delta 814), reused 1055 (delta 714), pack-reused 22125
Receiving objects: 100% (23430/23430), 8.57 MiB | 7.05 MiB/s, done.
Resolving deltas: 100% (16238/16238), done.
Updating files: 100% (236/236), done.
-- The C compiler identification is GNU 7.5.0
-- The CXX compiler identification is GNU 7.5.0
-- Check for working C compiler: /usr/local/bin//gcc
-- Check for working C compiler: /usr/local/bin//gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/local/bin//g++
-- Check for working CXX compiler: /usr/local/bin//g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- pybind11 v2.10.0 dev1
-- Found PythonInterp: /deployment/envs/bert_sentiment/bin/python (found suitable version "3.9.7", minimum required is "3.6")
-- Found PythonLibs: /deployment/envs/bert_sentiment/lib/libpython3.9.so
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Configuring done
-- Generating done
-- Build files have been written to: /deployment/pybind_crash/build
make: Warning: File `Makefile' has modification time 0.49 s in the future
make[1]: Warning: File `CMakeFiles/Makefile2' has modification time 0.53 s in the future
make[2]: Warning: File `CMakeFiles/example.dir/flags.make' has modification time 0.4 s in the future
Scanning dependencies of target example
make[2]: warning:  Clock skew detected.  Your build may be incomplete.
make[2]: Warning: File `CMakeFiles/example.dir/depend.make' has modification time 0.53 s in the future
[ 50%] Building CXX object CMakeFiles/example.dir/main.cpp.o
[100%] Linking CXX executable example
make[2]: warning:  Clock skew detected.  Your build may be incomplete.
[100%] Built target example
make[1]: warning:  Clock skew detected.  Your build may be incomplete.
make: warning:  Clock skew detected.  Your build may be incomplete.
Pybind Version: v2.9.1
Python Version: 3.9.7
Torch Version: 1.10.2
*** Error in `./example': free(): invalid pointer: 0x00000000039d2e08 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x81329)[0x7ff778fe0329]
./example[0x423d6c]
./example[0x41ff5f]
./example[0x41b26d]
./example[0x416ce6]
./example[0x413392]
./example[0x40913f]
./example[0x412b3e]
./example[0x412c1e]
./example[0x405d7d]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x7ff778f81555]
./example[0x405a89]
======= Memory map: ========
00400000-00442000 r-xp 00000000 00:35 5910974512280736                   /deployment/pybind_crash/build/example
00641000-00642000 r--p 00041000 00:35 5910974512280736                   /deployment/pybind_crash/build/example
00642000-00643000 rw-p 00042000 00:35 5910974512280736                   /deployment/pybind_crash/build/example
00643000-00644000 rw-p 00000000 00:00 0
00b9d000-04388000 rw-p 00000000 00:00 0                                  [heap]
7ff6e0000000-7ff6e0021000 rw-p 00000000 00:00 0
7ff6e0021000-7ff6e4000000 ---p 00000000 00:00 0
7ff6e5804000-7ff6e5984000 rw-p 00000000 00:00 0
7ff6e5984000-7ff6e598a000 r--p 00000000 00:35 562949953865638            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/json.cpython-39-x86_64-linux-gnu.so
7ff6e598a000-7ff6e5995000 r-xp 00006000 00:35 562949953865638            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/json.cpython-39-x86_64-linux-gnu.so
7ff6e5995000-7ff6e5999000 r--p 00011000 00:35 562949953865638            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/json.cpython-39-x86_64-linux-gnu.so
7ff6e5999000-7ff6e599a000 ---p 00015000 00:35 562949953865638            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/json.cpython-39-x86_64-linux-gnu.so
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7ff6e599b000-7ff6e599c000 rw-p 00016000 00:35 562949953865638            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/json.cpython-39-x86_64-linux-gnu.so
7ff6e59dc000-7ff6e59e8000 r--p 00000000 00:35 562949953865655            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/parsers.cpython-39-x86_64-linux-gnu.so
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7ff6e5a4a000-7ff6e5a4b000 ---p 0006e000 00:35 562949953865655            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/parsers.cpython-39-x86_64-linux-gnu.so
7ff6e5a4b000-7ff6e5a4c000 r--p 0006e000 00:35 562949953865655            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/parsers.cpython-39-x86_64-linux-gnu.so
7ff6e5a4c000-7ff6e5a52000 rw-p 0006f000 00:35 562949953865655            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/parsers.cpython-39-x86_64-linux-gnu.so
7ff6e5a52000-7ff6e5a94000 rw-p 00000000 00:00 0
7ff6e5a94000-7ff6e5a98000 r--p 00000000 00:35 562949953865693            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/testing.cpython-39-x86_64-linux-gnu.so
7ff6e5a98000-7ff6e5aa6000 r-xp 00004000 00:35 562949953865693            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/testing.cpython-39-x86_64-linux-gnu.so
7ff6e5aa6000-7ff6e5aa8000 r--p 00012000 00:35 562949953865693            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/testing.cpython-39-x86_64-linux-gnu.so
7ff6e5aa8000-7ff6e5aa9000 r--p 00013000 00:35 562949953865693            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/testing.cpython-39-x86_64-linux-gnu.so
7ff6e5aa9000-7ff6e5aaa000 rw-p 00014000 00:35 562949953865693            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/testing.cpython-39-x86_64-linux-gnu.so
7ff6e5aaa000-7ff6e5aeb000 rw-p 00000000 00:00 0
7ff6e5b2b000-7ff6e5b6b000 rw-p 00000000 00:00 0
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7ff6e5b7a000-7ff6e5c7f000 r-xp 0000f000 00:35 562949953865611            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/groupby.cpython-39-x86_64-linux-gnu.so
7ff6e5c7f000-7ff6e5c96000 r--p 00114000 00:35 562949953865611            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/groupby.cpython-39-x86_64-linux-gnu.so
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7ff6e5c97000-7ff6e5c98000 r--p 0012b000 00:35 562949953865611            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/groupby.cpython-39-x86_64-linux-gnu.so
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7ff6eb1e8000-7ff6eb1ee000 r-xp 00003000 00:35 562949953865723            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/tslibs/np_datetime.cpython-39-x86_64-linux-gnu.so
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7ff6eb1f0000-7ff6eb1f1000 r--p 0000a000 00:35 562949953865723            /deployment/envs/bert_sentiment/lib/python3.9/site-packages/pandas/_libs/tslibs/np_datetime.cpython-39-x86_64-linux-gnu.sorun.sh: line 18: 24993 Aborted                 ./example

```


### Versions

Collecting environment information...
PyTorch version: 1.10.2
Is debug build: False
CUDA used to build PyTorch: 10.2
ROCM used to build PyTorch: N/A

OS: CentOS Linux 7 (Core) (x86_64)
GCC version: (GCC) 8.4.0
Clang version: Could not collect
CMake version: version 3.14.3
Libc version: glibc-2.17

Python version: 3.9.7 (default, Sep 16 2021, 13:09:58)  [GCC 7.5.0] (64-bit runtime)
Python platform: Linux-5.4.72-microsoft-standard-WSL2-x86_64-with-glibc2.17
Is CUDA available: False
CUDA runtime version: No CUDA
GPU models and configuration: No CUDA
Nvidia driver version: No CUDA
cuDNN version: No CUDA
HIP runtime version: N/A
MIOpen runtime version: N/A
Is XNNPACK available: True

Versions of relevant libraries:
[pip3] numpy==1.19.2
[pip3] torch==1.10.2
[conda] blas                      1.0                         mkl
[conda] cudatoolkit               10.2.89              hfd86e86_1
[conda] mkl                       2020.2                      256
[conda] mkl-service               2.3.0            py39he8ac12f_0
[conda] mkl_fft                   1.3.0            py39h54f3939_0
[conda] mkl_random                1.0.2            py39h63df603_0
[conda] numpy                     1.19.2           py39h89c1606_0
[conda] numpy-base                1.19.2           py39h2ae0177_0
[conda] pytorch                   1.10.2          py3.9_cuda10.2_cudnn7.6.5_0    pytorch
[conda] pytorch-mutex             1.0                        cuda    pytorch


cc @ezyang @gchanan @zou3519