Repository: godot
Issue: Non-fatal error when launching dotnet project on iOS due to missing scripts
Labels: bug,topic:export

### Tested versions

v4.3.stable.mono.official [77dcf97d8]

### System information

Godot v4.3.stable.mono - macOS 13.7.2 - GLES3 (Compatibility) - AMD Radeon Pro 560 OpenGL Engine - Intel(R) Core(TM) i7-7820HQ CPU @ 2.90GHz (8 Threads)

### Issue description

When exporting a dotnet project to iOS and selecting "Export selected scenes (and dependencies)" option, dependencies of the C# scripts are not included in the exported .pck file, which causes following errors to be printed:

```
ERROR: Cannot open file 'res://AbstractCustomResource.cs'.
at: read_all_file_utf8 (modules/mono/utils/string_utils.cpp:152)
ERROR: Failed to read file: 'res://AbstractCustomResource.cs'.
at: load_source_code (modules/mono/csharp_script.cpp:2721)
ERROR: Cannot load C# script file 'res://AbstractCustomResource.cs'.
at: load (modules/mono/csharp_script.cpp:2797)
ERROR: Failed loading resource: res://AbstractCustomResource.cs. Make sure resources have been imported by opening the project in the editor at least once.
at: _load (core/io/resource_loader.cpp:284)
ERROR: Cannot load script for type 'AssemblyNotExported.AbstractCustomResource'. Path: 'res://AbstractCustomResource.cs'.
at: void Godot.Bridge.ScriptManagerBridge.GetOrLoadOrCreateScriptForType(System.Type, Godot.NativeInterop.godot_ref*) (:0)
ERROR: Cannot open file 'res://CustomResource.cs'.
at: read_all_file_utf8 (modules/mono/utils/string_utils.cpp:152)
ERROR: Failed to read file: 'res://CustomResource.cs'.
at: load_source_code (modules/mono/csharp_script.cpp:2721)
ERROR: Cannot load C# script file 'res://CustomResource.cs'.
at: load (modules/mono/csharp_script.cpp:2797)
ERROR: Failed loading resource: res://CustomResource.cs. Make sure resources have been imported by opening the project in the editor at least once.
at: _load (core/io/resource_loader.cpp:284)
ERROR: Cannot load script for type 'AssemblyNotExported.CustomResource'. Path: 'res://CustomResource.cs'.
at: void Godot.Bridge.ScriptManagerBridge.GetOrLoadOrCreateScriptForType(System.Type, Godot.NativeInterop.godot_ref*) (:0)
ERROR: Cannot open file 'res://AbstractCustomResource.cs'.
at: read_all_file_utf8 (modules/mono/utils/string_utils.cpp:152)
ERROR: Failed to read file: 'res://AbstractCustomResource.cs'.
at: load_source_code (modules/mono/csharp_script.cpp:2721)
ERROR: Cannot load C# script file 'res://AbstractCustomResource.cs'.
at: load (modules/mono/csharp_script.cpp:2797)
ERROR: Failed loading resource: res://AbstractCustomResource.cs. Make sure resources have been imported by opening the project in the editor at least once.
at: _load (core/io/resource_loader.cpp:284)
ERROR: Cannot load script for type 'AssemblyNotExported.AbstractCustomResource'. Path: 'res://AbstractCustomResource.cs'.
at: void Godot.Bridge.ScriptManagerBridge.GetOrLoadOrCreateScriptForType(System.Type, Godot.NativeInterop.godot_ref*) (:0)
```

Note: despite the logged errors, game works as expected and logic defined in the "missing" scripts is executed correctly.

- why are the error messages logged?
- why are those files tried to be read from "res://" if they should be part of the assembly?

**Side question**: while troubleshooting this issue, i assumed that the ".dll" file should be loaded in the beginning, as described in [Opening PCK files at runtime](https://docs.godotengine.org/en/4.3/tutorials/export/exporting_pcks.html#opening-pck-files-at-runtime), however when examining the exported ".pck" file, i did not find the "ProjectName.dll" file there. 

- where i can find the main project assembly in the "pck" file and do i need it?
- in future, when say when adding a DLC to the project, where i can find information on how to export a dotnet project so that the exported pack contains ".dll" file to be loaded?

### Steps to reproduce

- download MRP
- add ios export template
- export with provided export_presets.cfg
- run using xcode
- observe the errors

### Minimal reproduction project (MRP)

[assembly-not-exported.zip](https://github.com/user-attachments/files/18277523/assembly-not-exported.zip)