semaj83 commited on
Commit
d23ff21
1 Parent(s): df0d0fc

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +1 -21
README.md CHANGED
@@ -8,7 +8,7 @@ size_categories:
8
  - 10K<n<100K
9
  ---
10
 
11
- **CTMatch Dataset**
12
 
13
  This is a combined set of 2 labelled datasets of:
14
 
@@ -27,25 +27,5 @@ These 2 datasets contain no patient identifying information are openly available
27
 
28
  ---
29
 
30
- Additionally, for the IR task, other feature representations of the unlabelled documents have been created.
31
-
32
- Each of these has exactly 374648 lines of corresponding data:
33
-
34
- `doc_texts.csv`
35
- - texts extracted from processed documents using several fields including eligbility min and max age, and eligbility criteria, structured as this example from NCT00000102:
36
- "Inclusion Criteria: diagnosed with Congenital Adrenal Hyperplasia (CAH) normal ECG during baseline evaluation, Exclusion Criteria: history of liver disease, or elevated liver function tests history of cardiovascular disease"
37
-
38
-
39
- `doc_categories.csv`:
40
- - 1 x 15 vectors of somewhat arbitrarily chosen topic probabilities (softmax output) generated by zero-shot classification model, CTMatch.category_model(doc['condition']) lexically ordered as such:
41
- cancer,cardiac,endocrine,gastrointestinal,genetic,healthy,infection,neurological,other,pediatric,psychological,pulmonary,renal,reproductive
42
-
43
- `doc_embeddings.csv`:
44
- - 1 x 384 vectors of embeddings taken from last hidden state of CTMatch.embedding_model.encode(doc_text) using SentenceTransformers
45
-
46
-
47
- `index2docid.csv`:
48
- - simple mapping of index to NCTID's for filtering/reference throughout IR program, corresponding to vector, texts representation order
49
-
50
  **see repo for more information**:
51
  https://github.com/semajyllek/ctmatch
 
8
  - 10K<n<100K
9
  ---
10
 
11
+ **CTMatch Classification Dataset**
12
 
13
  This is a combined set of 2 labelled datasets of:
14
 
 
27
 
28
  ---
29
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
30
  **see repo for more information**:
31
  https://github.com/semajyllek/ctmatch