Using bpseq files

README.md

@@ -11,9 +11,9 @@ pretty_name: PDB
 ---
 
 # PDB
-	upload_date: 2023-11-22 14:34:34
+	upload_date: 2023-11-24 11:40:55
 	user: alberic
-	source: `CT_files_pdbee` (CT files format)
+	source: `bpSEQ_files_pdbee` (BPSEQ files format)
 
 	Data types:
 	- structure (Read from source.)

info.json

@@ -1,8 +1,8 @@
 {
     "name": "PDB",
-    "upload_date": "2023-11-22 14:34:34",
+    "upload_date": "2023-11-24 11:40:55",
     "user": "alberic",
-    "source": "`CT_files_pdbee` (CT files format)",
+    "source": "`bpSEQ_files_pdbee` (BPSEQ files format)",
     "structure": "source",
     "about structure": "Read from source.",
     "filtering_report": "Over a total of 702 datapoints, there are:\n    - 353 valid datapoints\n    - 0 invalid datapoints (ex: sequence with non-regular characters)\n    - 0 datapoints with the same reference\n    - 302 duplicate sequences with the same structure / dms\n    - 47 duplicate sequences with different structure / dms"

source/bpSEQ_files_pdbee/157D-2D.bpseq

@@ -0,0 +1,24 @@
+1 c 24
+2 G 23
+3 C 22
+4 G 0
+5 A 20
+6 A 19
+7 U 18
+8 U 17
+9 A 0
+10 G 15
+11 C 14
+12 G 13
+13 c 12
+14 G 11
+15 C 10
+16 G 0
+17 A 8
+18 A 7
+19 U 6
+20 U 5
+21 A 0
+22 G 3
+23 C 2
+24 G 1

source/bpSEQ_files_pdbee/165D-2D.bpseq

@@ -0,0 +1,18 @@
+1 g 17
+2 C 16
+3 U 15
+4 U 0
+5 C 0
+6 G 12
+7 G 11
+8 C 10
+9 u 0
+10 g 8
+11 C 7
+12 U 6
+13 U 0
+14 C 0
+15 G 3
+16 G 2
+17 C 1
+18 u 0

source/bpSEQ_files_pdbee/1DUH-2D.bpseq

@@ -0,0 +1,45 @@
+1 c 0
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+44 A 0
+45 g 0

source/bpSEQ_files_pdbee/1EHZ-2D.bpseq

@@ -0,0 +1,76 @@
+1 g 72
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+4 G 69
+5 A 68
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+8 U 0
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source/bpSEQ_files_pdbee/1ET4-2D.bpseq

@@ -0,0 +1,70 @@
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source/bpSEQ_files_pdbee/1EVV-2D.bpseq

@@ -0,0 +1,76 @@
+1 g 72
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source/bpSEQ_files_pdbee/1F1T-2D.bpseq

@@ -0,0 +1,38 @@
+1 g 38
+2 G 37
+3 A 36
+4 u 35
+5 C 34
+6 C 33
+7 C 29
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+9 A 0
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+33 G 6
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+35 A 4
+36 u 3
+37 C 2
+38 C 1

source/bpSEQ_files_pdbee/1FUF-2D.bpseq

@@ -0,0 +1,28 @@
+1 g 28
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+4 A 25
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+6 U 0
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+8 C 23
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+23 G 8
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+25 U 4
+26 A 3
+27 c 2
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source/bpSEQ_files_pdbee/1G2J-2D.bpseq

@@ -0,0 +1,8 @@
+1 c 0
+2 C 0
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+4 c 0
+5 G 0
+6 G 0
+7 G 0
+8 G 0

source/bpSEQ_files_pdbee/1GID-2D.bpseq

@@ -0,0 +1,316 @@
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source/bpSEQ_files_pdbee/1HR2-2D.bpseq

@@ -0,0 +1,316 @@
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source/bpSEQ_files_pdbee/1I7J-2D.bpseq

@@ -0,0 +1,12 @@
+1 c 12
+2 g 11
+3 c 10
+4 g 9
+5 c 8
+6 g 7
+7 c 6
+8 g 5
+9 c 4
+10 g 3
+11 c 2
+12 g 1

source/bpSEQ_files_pdbee/1I9V-2D.bpseq

@@ -0,0 +1,76 @@
+1 g 72
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source/bpSEQ_files_pdbee/1I9X-2D.bpseq

@@ -0,0 +1,26 @@
+1 u 26
+2 A 25
+3 C 24
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+5 A 0
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+23 A 4
+24 G 3
+25 U 2
+26 A 1

source/bpSEQ_files_pdbee/1J6S-2D.bpseq

@@ -0,0 +1,6 @@
+1 u 0
+2 G 0
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+4 G 0
+5 G 0
+6 U 0

source/bpSEQ_files_pdbee/1J7T-2D.bpseq

@@ -0,0 +1,44 @@
+1 C 0
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source/bpSEQ_files_pdbee/1J8G-2D.bpseq

@@ -0,0 +1,12 @@
+1 u 0
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source/bpSEQ_files_pdbee/1J9H-2D.bpseq

@@ -0,0 +1,18 @@
+1 g 18
+2 U 17
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+4 U 0
+5 C 15
+6 G 14
+7 c 12
+8 A 11
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source/bpSEQ_files_pdbee/1KD3-2D.bpseq

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source/bpSEQ_files_pdbee/1KD4-2D.bpseq

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source/bpSEQ_files_pdbee/1KD5-2D.bpseq

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source/bpSEQ_files_pdbee/1KFO-2D.bpseq

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source/bpSEQ_files_pdbee/1KH6-2D.bpseq

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source/bpSEQ_files_pdbee/1L2X-2D.bpseq

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source/bpSEQ_files_pdbee/1L3D-2D.bpseq

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source/bpSEQ_files_pdbee/1L3Z-2D.bpseq

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source/bpSEQ_files_pdbee/1LC4-2D.bpseq

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source/bpSEQ_files_pdbee/1MDG-2D.bpseq

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source/bpSEQ_files_pdbee/1MSY-2D.bpseq

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source/bpSEQ_files_pdbee/1MWL-2D.bpseq

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source/bpSEQ_files_pdbee/1NLC-2D.bpseq

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source/bpSEQ_files_pdbee/1O3Z-2D.bpseq

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source/bpSEQ_files_pdbee/1O9M-2D.bpseq

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source/bpSEQ_files_pdbee/1OSU-2D.bpseq

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source/bpSEQ_files_pdbee/1P79-2D.bpseq

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source/bpSEQ_files_pdbee/1Q93-2D.bpseq

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source/bpSEQ_files_pdbee/1Q96-2D.bpseq

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source/bpSEQ_files_pdbee/1Q9A-2D.bpseq

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source/bpSEQ_files_pdbee/1QBP-2D.bpseq

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source/bpSEQ_files_pdbee/1RNA-2D.bpseq

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source/bpSEQ_files_pdbee/1RXA-2D.bpseq

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source/bpSEQ_files_pdbee/1RXB-2D.bpseq

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source/bpSEQ_files_pdbee/1SA9-2D.bpseq

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source/bpSEQ_files_pdbee/1WVD-2D.bpseq

@@ -0,0 +1,46 @@
+1 c 46
+2 U 45
+3 U 44
+4 G 43
+5 C 42
+6 U 41
+7 G 40
+8 A 0
+9 G 0
+10 G 38
+11 U 37
+12 G 36
+13 C 35
+14 A 34
+15 C 33
+16 A 0
+17 C 30
+18 A 29
+19 G 28
+20 C 27
+21 A 26
+22 A 25
+23 G 24
+24 c 23
+25 U 22
+26 U 21
+27 G 20
+28 C 19
+29 U 18
+30 g 17
+31 a 0
+32 g 0
+33 G 15
+34 U 14
+35 G 13
+36 C 12
+37 A 11
+38 C 10
+39 A 0
+40 C 7
+41 A 6
+42 G 5
+43 C 4
+44 A 3
+45 A 2
+46 G 1