Datasets:
ptsw
/
ref_seq_viral_tandemrepeats

Dataset card Viewer Files Community
1
id
stringlengths
11
11
start_pos
int64
1
2.47M
end_pos
int64
16
2.47M
motif_seq
stringlengths
8
100
motif_length
int64
8
100
repeats
int64
2
96
ltr_length
int64
16
2.42k
__index_level_0__
int64
0
1.24k
NC_027785.1
21
38
TCTGCTACA
9
2
18
0
NC_027784.1
993
1,010
CGTTACGTA
9
2
18
0
NC_027779.1
6,541
6,738
TCCTGAAGCTGAAAATAAGGACCCTTATAAACAATACAGCTTTTGGCCTGTTGATTTAACTGAACGGTTTTCAGCTGAATTAAGTCAATTTCCCCTGGG
99
2
198
0
NC_027792.1
17
32
CGAGACAG
8
2
16
0
NC_027916.2
6,540
6,836
TCGGGTCTTTCGGTTCTTGTCACTCGT
27
11
297
0
NC_027916.2
27,611
28,210
CCTCCGATCACCCCACCAGAAGAGGTTACC
30
20
600
1
NC_027916.2
31,883
32,023
TTATAGTAACATACTACATGTAAAGGGATCTAGTTTAAGGATCCGTT
47
3
141
2
NC_027916.2
59,762
59,950
CCACCTCCTCCTCAAGTTGTCCACCCA
27
7
189
3
NC_027916.2
74,398
74,413
AAGCAACC
8
2
16
4
NC_027916.2
85,376
85,391
ACATGTTT
8
2
16
5
NC_027916.2
97,095
97,289
TATTTATATATTA
13
15
195
6
NC_027916.2
121,235
121,564
GGGGCCCGATCCAGG
15
22
330
7
NC_027916.2
123,152
123,286
CAGACTCCGTCCGTTAGATTTTGTCAAATTCTGGTCGAGTCGAAC
45
3
135
8
NC_027916.2
123,583
123,663
ACGTAACCCTAGCTGCTCTAAGGGACA
27
3
81
9
NC_027916.2
126,971
127,770
TGTCGGCCACCCTGACTCTACCCCGCTCCGGCCTGCCCCC
40
20
800
10
NC_027916.2
129,269
129,382
GCTGGTAACAGAGTTCTTAATGGGTGCGCTACCGGCCGCGGCCGCTGGGGCAGACTT
57
2
114
11
NC_027916.2
130,962
131,326
ATGCATATCATTAAATATGGAGGAGGTTATGGAATGAGGGAAGTCGGCTCCGATTGGTAGTTGGGGCAGGTAG
73
5
365
12
NC_027916.2
131,439
131,567
ATGGTGGATATGGGTGGATGTATGTTTATGCATATCATTAAAA
43
3
129
13
NC_027916.2
137,689
137,704
TAATTACC
8
2
16
14
NC_027916.2
150,542
150,706
GGTTGGGGAGAACGGTCATAATTAGAGGGACCG
33
5
165
15
NC_027916.2
151,008
151,295
TATCCGAGTTACTACCCCCCTGTACCTGCTGGAAAT
36
8
288
16
NC_027916.2
151,910
152,274
TTCCATAACCTCCTCCATATTTAATGATATGCATCTACCTGCCCCAACTACCAATCGGAGCCGACTTCCCTCA
73
5
365
17
NC_027916.2
153,885
153,998
AGCAAGTCTGCCCCAGCGGCCGCGGCCGGTAGCGCACCCATTAAGAACTCTGTTACC
57
2
114
18
NC_027916.2
155,475
156,274
CGGGGTAGAGTCAGGGTGGCCGACAGGGGGCAGGCCGGAG
40
20
800
19
NC_027916.2
159,594
159,674
GCTAGGGTTACGTTGTCCCTTAGAGCA
27
3
81
20
NC_027916.2
159,955
160,089
ATTTGACAAAATCTAACGGACGGAGTCTGGTTCGACTCGACCAGA
45
3
135
21
NC_027915.1
667
684
TTAGTAGTA
9
2
18
0
NC_027818.1
7,236
7,253
ATGGCAAGA
9
2
18
0
NC_029255.1
26,271
26,288
ATTGCTAAA
9
2
18
0
NC_029255.1
33,330
33,349
CTATATATAT
10
2
20
1
NC_029255.1
33,723
33,772
AATTTCTACAAAAAGCTAAATCCAG
25
2
50
2
NC_029255.1
34,440
34,519
GTTTTTAACCTATTTTTTGAGTTTTTATTTTCTGATGTGA
40
2
80
3
NC_029255.1
37,388
37,413
ATAAAATAAAAAA
13
2
26
4
NC_029255.1
41,758
41,773
TTGGAGCA
8
2
16
5
NC_029255.1
65,146
65,163
GAAGAATTT
9
2
18
6
NC_029255.1
67,146
67,163
GAAGAAAAA
9
2
18
7
NC_029255.1
74,360
74,377
AGAGTCTGA
9
2
18
8
NC_029255.1
74,420
74,437
ATCTTCTTC
9
2
18
9
NC_029255.1
76,669
76,722
TCTGCTTCTTCATCAGAGATATCTAGA
27
2
54
10
NC_029255.1
76,749
76,802
TTCTTCATCAGAAATTTCTAGTTCTAT
27
2
54
11
NC_029255.1
82,804
82,857
AGCAGCCCCGGCAGCCTGATCAGCCCC
27
2
54
12
NC_029255.1
82,869
82,886
CAGCCCCGG
9
2
18
13
NC_029255.1
82,931
82,966
GCAGCCTGAGCAGCCCCG
18
2
36
14
NC_029255.1
83,834
83,857
TACCCCAGCAGC
12
2
24
15
NC_029255.1
83,884
83,919
CCCCAGCAGATA
12
3
36
16
NC_029255.1
88,321
88,338
TAAAAACTT
9
2
18
17
NC_029255.1
88,930
88,947
TGTCCTCAT
9
2
18
18
NC_029255.1
92,620
92,691
AGAAATAATCCTAGAGATGAACCA
24
3
72
19
NC_029255.1
107,515
107,530
AAACACAC
8
2
16
20
NC_029255.1
112,355
112,414
CATCACCCCCAA
12
5
60
21
NC_029255.1
120,609
120,688
GAAATTTTACAACCCAGCTAAAATCCCACCCTGGATCCTG
40
2
80
22
NC_029255.1
122,854
122,877
GATGGCCTTGGA
12
2
24
23
NC_029255.1
122,998
123,033
TCTCCATCTCCATCCCCA
18
2
36
24
NC_029255.1
123,055
123,102
CCATCTCCATCTCCATCCCCATCC
24
2
48
25
NC_029255.1
123,190
123,225
TCAGGCTCAGGCTCAGGT
18
2
36
26
NC_029255.1
123,226
123,297
TCAGGCTCAGGCTCAGGCTCAGGTTCAGGCTCAGGT
36
2
72
27
NC_029255.1
123,298
123,321
TCAGGCTCAGGT
12
2
24
28
NC_027923.1
1,716
1,733
GGTGGCGGC
9
2
18
0
NC_027923.1
6,523
6,556
GCGGCTTATCGTGTCCG
17
2
34
1
NC_027923.1
8,331
8,380
GGTTATGGTATTATAATGTATTAAT
25
2
50
2
NC_027923.1
8,572
8,679
AGTAAAAAACTTAACTCAGTAAAACTT
27
4
108
3
NC_027923.1
8,739
8,762
AAAAAACTTAGT
12
2
24
4
NC_027923.1
8,769
8,790
CTTAGTAAAAA
11
2
22
5
NC_027923.1
8,791
8,818
CTTAAAGTAAAAAA
14
2
28
6
NC_027923.1
8,835
8,866
TTAGTAAAAACTTAGT
16
2
32
7
NC_027923.1
8,867
8,902
AAAAACTTAGTA
12
3
36
8
NC_027923.1
8,903
8,938
AAAACTTAGTAA
12
3
36
9
NC_027923.1
8,959
8,994
TAAAAAACTTAG
12
3
36
10
NC_027923.1
13,688
13,703
CAATAGTA
8
2
16
11
NC_027923.1
19,641
19,668
GTAATAATTTTATT
14
2
28
12
NC_027923.1
25,759
25,794
CAACAACGA
9
4
36
13
NC_027923.1
43,784
43,801
TTGTTTTCG
9
2
18
14
NC_027923.1
47,739
47,756
AGTTGTTTG
9
2
18
15
NC_027923.1
56,498
56,513
AAATGTAT
8
2
16
16
NC_027923.1
60,522
60,539
CGTCGTCGA
9
2
18
17
NC_027923.1
84,961
85,002
CCGCCGGCAACGACTCCAATT
21
2
42
18
NC_027923.1
103,790
103,809
CGACACGTTT
10
2
20
19
NC_027923.1
103,994
104,013
CGACACGTTT
10
2
20
20
NC_027923.1
125,034
125,049
ATTTTTCT
8
2
16
21
NC_027917.1
5,862
5,877
TATAATGA
8
2
16
0
NC_027917.1
9,680
9,813
TGCAGATTTCCTTTCGGTAGCATTGTTAGACACGCAAGGAATTGTTACTGGGAAATACCGATGTGAT
67
2
134
1
NC_027926.1
3,234
3,255
ATCATATGAAT
11
2
22
0
NC_027922.1
2,959
2,976
ATAACATGT
9
2
18
0
NC_027929.1
494
511
AGGATATTC
9
2
18
0
NC_028099.1
79
94
TTAAGTCC
8
2
16
0
NC_028099.1
1,505
3,124
CACAGTGGGAGGGACTTCCGGCACATCGTCAGACCCGAGCGCCTCGGGTTGGACTTTGGACAAGTCCAACCACGCAAAGTCCAACCCCCG
90
18
1,620
1
NC_028099.1
3,655
3,834
CACAGTGGGAGGGACTTCCGGCACATCGTCAGACCCGAGCGCCTCGGGTTGGACTTTGGACAAGTCCAACCACGCAAAGTCCAACCCCCG
90
2
180
2
NC_028099.1
13,137
13,154
GTAACATAT
9
2
18
3
NC_028099.1
30,882
30,897
AAGGGGGT
8
2
16
4
NC_028099.1
31,466
31,705
TGAGGTTAAACCTCAGCTAAAAGCTGGAATGTCCTGTCCCTAATTTCAAAGATCCTAGAC
60
4
240
5
NC_028099.1
64,080
64,095
CTTTTTTT
8
2
16
6
NC_028099.1
68,963
68,978
GTTCTGTA
8
2
16
7
NC_028099.1
80,123
80,140
GATGTTTAT
9
2
18
8
NC_028099.1
87,481
87,496
AGAGAACC
8
2
16
9
NC_028099.1
99,011
99,026
TAAAAAAA
8
2
16
10
NC_028099.1
113,079
113,094
AAGGGGGT
8
2
16
11
NC_028099.1
114,023
114,142
GGATGGGCCGGCAGT
15
8
120
12
NC_028099.1
114,339
114,374
TCCTCTTCCTCCTCTTCC
18
2
36
13
NC_028099.1
114,405
114,431
TCTTCTTCA
9
3
27
14
NC_028099.1
114,441
114,602
TGGCCCTCT
9
18
162
15