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|
| import logging |
| import os |
| import re |
| import json |
| import time |
| import copy |
| import infinity |
| from infinity.common import ConflictType, InfinityException, SortType |
| from infinity.index import IndexInfo, IndexType |
| from infinity.connection_pool import ConnectionPool |
| from infinity.errors import ErrorCode |
| from rag import settings |
| from rag.settings import PAGERANK_FLD |
| from rag.utils import singleton |
| import polars as pl |
| from polars.series.series import Series |
| from api.utils.file_utils import get_project_base_directory |
|
|
| from rag.utils.doc_store_conn import ( |
| DocStoreConnection, |
| MatchExpr, |
| MatchTextExpr, |
| MatchDenseExpr, |
| FusionExpr, |
| OrderByExpr, |
| ) |
|
|
| logger = logging.getLogger('ragflow.infinity_conn') |
|
|
|
|
| def equivalent_condition_to_str(condition: dict, table_instance=None) -> str | None: |
| assert "_id" not in condition |
| clmns = {} |
| if table_instance: |
| for n, ty, de, _ in table_instance.show_columns().rows(): |
| clmns[n] = (ty, de) |
|
|
| def exists(cln): |
| nonlocal clmns |
| assert cln in clmns, f"'{cln}' should be in '{clmns}'." |
| ty, de = clmns[cln] |
| if ty.lower().find("cha"): |
| if not de: |
| de = "" |
| return f" {cln}!='{de}' " |
| return f"{cln}!={de}" |
|
|
| cond = list() |
| for k, v in condition.items(): |
| if not isinstance(k, str) or k in ["kb_id"] or not v: |
| continue |
| if isinstance(v, list): |
| inCond = list() |
| for item in v: |
| if isinstance(item, str): |
| inCond.append(f"'{item}'") |
| else: |
| inCond.append(str(item)) |
| if inCond: |
| strInCond = ", ".join(inCond) |
| strInCond = f"{k} IN ({strInCond})" |
| cond.append(strInCond) |
| elif k == "must_not": |
| if isinstance(v, dict): |
| for kk, vv in v.items(): |
| if kk == "exists": |
| cond.append("NOT (%s)" % exists(vv)) |
| elif isinstance(v, str): |
| cond.append(f"{k}='{v}'") |
| elif k == "exists": |
| cond.append(exists(v)) |
| else: |
| cond.append(f"{k}={str(v)}") |
| return " AND ".join(cond) if cond else "1=1" |
|
|
|
|
| def concat_dataframes(df_list: list[pl.DataFrame], selectFields: list[str]) -> pl.DataFrame: |
| """ |
| Concatenate multiple dataframes into one. |
| """ |
| df_list = [df for df in df_list if not df.is_empty()] |
| if df_list: |
| return pl.concat(df_list) |
| schema = dict() |
| for field_name in selectFields: |
| if field_name == 'score()': |
| schema['SCORE'] = str |
| else: |
| schema[field_name] = str |
| return pl.DataFrame(schema=schema) |
|
|
|
|
| @singleton |
| class InfinityConnection(DocStoreConnection): |
| def __init__(self): |
| self.dbName = settings.INFINITY.get("db_name", "default_db") |
| infinity_uri = settings.INFINITY["uri"] |
| if ":" in infinity_uri: |
| host, port = infinity_uri.split(":") |
| infinity_uri = infinity.common.NetworkAddress(host, int(port)) |
| self.connPool = None |
| logger.info(f"Use Infinity {infinity_uri} as the doc engine.") |
| for _ in range(24): |
| try: |
| connPool = ConnectionPool(infinity_uri) |
| inf_conn = connPool.get_conn() |
| res = inf_conn.show_current_node() |
| if res.error_code == ErrorCode.OK and res.server_status == "started": |
| self._migrate_db(inf_conn) |
| self.connPool = connPool |
| connPool.release_conn(inf_conn) |
| break |
| connPool.release_conn(inf_conn) |
| logger.warn(f"Infinity status: {res.server_status}. Waiting Infinity {infinity_uri} to be healthy.") |
| time.sleep(5) |
| except Exception as e: |
| logger.warning(f"{str(e)}. Waiting Infinity {infinity_uri} to be healthy.") |
| time.sleep(5) |
| if self.connPool is None: |
| msg = f"Infinity {infinity_uri} is unhealthy in 120s." |
| logger.error(msg) |
| raise Exception(msg) |
| logger.info(f"Infinity {infinity_uri} is healthy.") |
|
|
| def _migrate_db(self, inf_conn): |
| inf_db = inf_conn.create_database(self.dbName, ConflictType.Ignore) |
| fp_mapping = os.path.join( |
| get_project_base_directory(), "conf", "infinity_mapping.json" |
| ) |
| if not os.path.exists(fp_mapping): |
| raise Exception(f"Mapping file not found at {fp_mapping}") |
| schema = json.load(open(fp_mapping)) |
| table_names = inf_db.list_tables().table_names |
| for table_name in table_names: |
| inf_table = inf_db.get_table(table_name) |
| index_names = inf_table.list_indexes().index_names |
| if "q_vec_idx" not in index_names: |
| |
| continue |
| column_names = inf_table.show_columns()["name"] |
| column_names = set(column_names) |
| for field_name, field_info in schema.items(): |
| if field_name in column_names: |
| continue |
| res = inf_table.add_columns({field_name: field_info}) |
| assert res.error_code == infinity.ErrorCode.OK |
| logger.info( |
| f"INFINITY added following column to table {table_name}: {field_name} {field_info}" |
| ) |
| if field_info["type"] != "varchar" or "analyzer" not in field_info: |
| continue |
| inf_table.create_index( |
| f"text_idx_{field_name}", |
| IndexInfo( |
| field_name, IndexType.FullText, {"ANALYZER": field_info["analyzer"]} |
| ), |
| ConflictType.Ignore, |
| ) |
|
|
| """ |
| Database operations |
| """ |
|
|
| def dbType(self) -> str: |
| return "infinity" |
|
|
| def health(self) -> dict: |
| """ |
| Return the health status of the database. |
| """ |
| inf_conn = self.connPool.get_conn() |
| res = inf_conn.show_current_node() |
| self.connPool.release_conn(inf_conn) |
| res2 = { |
| "type": "infinity", |
| "status": "green" if res.error_code == 0 and res.server_status == "started" else "red", |
| "error": res.error_msg, |
| } |
| return res2 |
|
|
| """ |
| Table operations |
| """ |
|
|
| def createIdx(self, indexName: str, knowledgebaseId: str, vectorSize: int): |
| table_name = f"{indexName}_{knowledgebaseId}" |
| inf_conn = self.connPool.get_conn() |
| inf_db = inf_conn.create_database(self.dbName, ConflictType.Ignore) |
|
|
| fp_mapping = os.path.join( |
| get_project_base_directory(), "conf", "infinity_mapping.json" |
| ) |
| if not os.path.exists(fp_mapping): |
| raise Exception(f"Mapping file not found at {fp_mapping}") |
| schema = json.load(open(fp_mapping)) |
| vector_name = f"q_{vectorSize}_vec" |
| schema[vector_name] = {"type": f"vector,{vectorSize},float"} |
| inf_table = inf_db.create_table( |
| table_name, |
| schema, |
| ConflictType.Ignore, |
| ) |
| inf_table.create_index( |
| "q_vec_idx", |
| IndexInfo( |
| vector_name, |
| IndexType.Hnsw, |
| { |
| "M": "16", |
| "ef_construction": "50", |
| "metric": "cosine", |
| "encode": "lvq", |
| }, |
| ), |
| ConflictType.Ignore, |
| ) |
| for field_name, field_info in schema.items(): |
| if field_info["type"] != "varchar" or "analyzer" not in field_info: |
| continue |
| inf_table.create_index( |
| f"text_idx_{field_name}", |
| IndexInfo( |
| field_name, IndexType.FullText, {"ANALYZER": field_info["analyzer"]} |
| ), |
| ConflictType.Ignore, |
| ) |
| self.connPool.release_conn(inf_conn) |
| logger.info( |
| f"INFINITY created table {table_name}, vector size {vectorSize}" |
| ) |
|
|
| def deleteIdx(self, indexName: str, knowledgebaseId: str): |
| table_name = f"{indexName}_{knowledgebaseId}" |
| inf_conn = self.connPool.get_conn() |
| db_instance = inf_conn.get_database(self.dbName) |
| db_instance.drop_table(table_name, ConflictType.Ignore) |
| self.connPool.release_conn(inf_conn) |
| logger.info(f"INFINITY dropped table {table_name}") |
|
|
| def indexExist(self, indexName: str, knowledgebaseId: str) -> bool: |
| table_name = f"{indexName}_{knowledgebaseId}" |
| try: |
| inf_conn = self.connPool.get_conn() |
| db_instance = inf_conn.get_database(self.dbName) |
| _ = db_instance.get_table(table_name) |
| self.connPool.release_conn(inf_conn) |
| return True |
| except Exception as e: |
| logger.warning(f"INFINITY indexExist {str(e)}") |
| return False |
|
|
| """ |
| CRUD operations |
| """ |
|
|
| def search( |
| self, selectFields: list[str], |
| highlightFields: list[str], |
| condition: dict, |
| matchExprs: list[MatchExpr], |
| orderBy: OrderByExpr, |
| offset: int, |
| limit: int, |
| indexNames: str | list[str], |
| knowledgebaseIds: list[str], |
| aggFields: list[str] = [], |
| rank_feature: dict | None = None |
| ) -> list[dict] | pl.DataFrame: |
| """ |
| TODO: Infinity doesn't provide highlight |
| """ |
| if isinstance(indexNames, str): |
| indexNames = indexNames.split(",") |
| assert isinstance(indexNames, list) and len(indexNames) > 0 |
| inf_conn = self.connPool.get_conn() |
| db_instance = inf_conn.get_database(self.dbName) |
| df_list = list() |
| table_list = list() |
| for essential_field in ["id"]: |
| if essential_field not in selectFields: |
| selectFields.append(essential_field) |
| score_func = "" |
| score_column = "" |
| for matchExpr in matchExprs: |
| if isinstance(matchExpr, MatchTextExpr): |
| score_func = "score()" |
| score_column = "SCORE" |
| break |
| if not score_func: |
| for matchExpr in matchExprs: |
| if isinstance(matchExpr, MatchDenseExpr): |
| score_func = "similarity()" |
| score_column = "SIMILARITY" |
| break |
| if matchExprs: |
| selectFields.append(score_func) |
| selectFields.append(PAGERANK_FLD) |
| selectFields = [f for f in selectFields if f != "_score"] |
|
|
| |
| filter_cond = None |
| filter_fulltext = "" |
| if condition: |
| for indexName in indexNames: |
| table_name = f"{indexName}_{knowledgebaseIds[0]}" |
| filter_cond = equivalent_condition_to_str(condition, db_instance.get_table(table_name)) |
| break |
|
|
| for matchExpr in matchExprs: |
| if isinstance(matchExpr, MatchTextExpr): |
| if filter_cond and "filter" not in matchExpr.extra_options: |
| matchExpr.extra_options.update({"filter": filter_cond}) |
| fields = ",".join(matchExpr.fields) |
| filter_fulltext = f"filter_fulltext('{fields}', '{matchExpr.matching_text}')" |
| if filter_cond: |
| filter_fulltext = f"({filter_cond}) AND {filter_fulltext}" |
| minimum_should_match = matchExpr.extra_options.get("minimum_should_match", 0.0) |
| if isinstance(minimum_should_match, float): |
| str_minimum_should_match = str(int(minimum_should_match * 100)) + "%" |
| matchExpr.extra_options["minimum_should_match"] = str_minimum_should_match |
| for k, v in matchExpr.extra_options.items(): |
| if not isinstance(v, str): |
| matchExpr.extra_options[k] = str(v) |
| logger.debug(f"INFINITY search MatchTextExpr: {json.dumps(matchExpr.__dict__)}") |
| elif isinstance(matchExpr, MatchDenseExpr): |
| if filter_fulltext and filter_cond and "filter" not in matchExpr.extra_options: |
| matchExpr.extra_options.update({"filter": filter_fulltext}) |
| for k, v in matchExpr.extra_options.items(): |
| if not isinstance(v, str): |
| matchExpr.extra_options[k] = str(v) |
| logger.debug(f"INFINITY search MatchDenseExpr: {json.dumps(matchExpr.__dict__)}") |
| elif isinstance(matchExpr, FusionExpr): |
| logger.debug(f"INFINITY search FusionExpr: {json.dumps(matchExpr.__dict__)}") |
|
|
| order_by_expr_list = list() |
| if orderBy.fields: |
| for order_field in orderBy.fields: |
| if order_field[1] == 0: |
| order_by_expr_list.append((order_field[0], SortType.Asc)) |
| else: |
| order_by_expr_list.append((order_field[0], SortType.Desc)) |
|
|
| total_hits_count = 0 |
| |
| for indexName in indexNames: |
| for knowledgebaseId in knowledgebaseIds: |
| table_name = f"{indexName}_{knowledgebaseId}" |
| try: |
| table_instance = db_instance.get_table(table_name) |
| except Exception: |
| continue |
| table_list.append(table_name) |
| builder = table_instance.output(selectFields) |
| if len(matchExprs) > 0: |
| for matchExpr in matchExprs: |
| if isinstance(matchExpr, MatchTextExpr): |
| fields = ",".join(matchExpr.fields) |
| builder = builder.match_text( |
| fields, |
| matchExpr.matching_text, |
| matchExpr.topn, |
| matchExpr.extra_options, |
| ) |
| elif isinstance(matchExpr, MatchDenseExpr): |
| builder = builder.match_dense( |
| matchExpr.vector_column_name, |
| matchExpr.embedding_data, |
| matchExpr.embedding_data_type, |
| matchExpr.distance_type, |
| matchExpr.topn, |
| matchExpr.extra_options, |
| ) |
| elif isinstance(matchExpr, FusionExpr): |
| builder = builder.fusion( |
| matchExpr.method, matchExpr.topn, matchExpr.fusion_params |
| ) |
| else: |
| if len(filter_cond) > 0: |
| builder.filter(filter_cond) |
| if orderBy.fields: |
| builder.sort(order_by_expr_list) |
| builder.offset(offset).limit(limit) |
| kb_res, extra_result = builder.option({"total_hits_count": True}).to_pl() |
| if extra_result: |
| total_hits_count += int(extra_result["total_hits_count"]) |
| logger.debug(f"INFINITY search table: {str(table_name)}, result: {str(kb_res)}") |
| df_list.append(kb_res) |
| self.connPool.release_conn(inf_conn) |
| res = concat_dataframes(df_list, selectFields) |
| if matchExprs: |
| res = res.sort(pl.col(score_column) + pl.col(PAGERANK_FLD), descending=True, maintain_order=True) |
| if score_column and score_column != "SCORE": |
| res = res.rename({score_column: "_score"}) |
| res = res.limit(limit) |
| logger.debug(f"INFINITY search final result: {str(res)}") |
| return res, total_hits_count |
|
|
| def get( |
| self, chunkId: str, indexName: str, knowledgebaseIds: list[str] |
| ) -> dict | None: |
| inf_conn = self.connPool.get_conn() |
| db_instance = inf_conn.get_database(self.dbName) |
| df_list = list() |
| assert isinstance(knowledgebaseIds, list) |
| table_list = list() |
| for knowledgebaseId in knowledgebaseIds: |
| table_name = f"{indexName}_{knowledgebaseId}" |
| table_list.append(table_name) |
| table_instance = None |
| try: |
| table_instance = db_instance.get_table(table_name) |
| except Exception: |
| logger.warning( |
| f"Table not found: {table_name}, this knowledge base isn't created in Infinity. Maybe it is created in other document engine.") |
| continue |
| kb_res, _ = table_instance.output(["*"]).filter(f"id = '{chunkId}'").to_pl() |
| logger.debug(f"INFINITY get table: {str(table_list)}, result: {str(kb_res)}") |
| df_list.append(kb_res) |
| self.connPool.release_conn(inf_conn) |
| res = concat_dataframes(df_list, ["id"]) |
| res_fields = self.getFields(res, res.columns) |
| return res_fields.get(chunkId, None) |
|
|
| def insert( |
| self, documents: list[dict], indexName: str, knowledgebaseId: str = None |
| ) -> list[str]: |
| inf_conn = self.connPool.get_conn() |
| db_instance = inf_conn.get_database(self.dbName) |
| table_name = f"{indexName}_{knowledgebaseId}" |
| try: |
| table_instance = db_instance.get_table(table_name) |
| except InfinityException as e: |
| |
| if e.error_code != ErrorCode.TABLE_NOT_EXIST: |
| raise |
| vector_size = 0 |
| patt = re.compile(r"q_(?P<vector_size>\d+)_vec") |
| for k in documents[0].keys(): |
| m = patt.match(k) |
| if m: |
| vector_size = int(m.group("vector_size")) |
| break |
| if vector_size == 0: |
| raise ValueError("Cannot infer vector size from documents") |
| self.createIdx(indexName, knowledgebaseId, vector_size) |
| table_instance = db_instance.get_table(table_name) |
|
|
| |
| embedding_clmns = [] |
| clmns = table_instance.show_columns().rows() |
| for n, ty, _, _ in clmns: |
| r = re.search(r"Embedding\([a-z]+,([0-9]+)\)", ty) |
| if not r: |
| continue |
| embedding_clmns.append((n, int(r.group(1)))) |
|
|
| docs = copy.deepcopy(documents) |
| for d in docs: |
| assert "_id" not in d |
| assert "id" in d |
| for k, v in d.items(): |
| if k in ["important_kwd", "question_kwd", "entities_kwd", "tag_kwd", "source_id"]: |
| assert isinstance(v, list) |
| d[k] = "###".join(v) |
| elif re.search(r"_feas$", k): |
| d[k] = json.dumps(v) |
| elif k == 'kb_id': |
| if isinstance(d[k], list): |
| d[k] = d[k][0] |
| elif k == "position_int": |
| assert isinstance(v, list) |
| arr = [num for row in v for num in row] |
| d[k] = "_".join(f"{num:08x}" for num in arr) |
| elif k in ["page_num_int", "top_int"]: |
| assert isinstance(v, list) |
| d[k] = "_".join(f"{num:08x}" for num in v) |
|
|
| for n, vs in embedding_clmns: |
| if n in d: |
| continue |
| d[n] = [0] * vs |
| ids = ["'{}'".format(d["id"]) for d in docs] |
| str_ids = ", ".join(ids) |
| str_filter = f"id IN ({str_ids})" |
| table_instance.delete(str_filter) |
| |
| |
| |
| table_instance.insert(docs) |
| self.connPool.release_conn(inf_conn) |
| logger.debug(f"INFINITY inserted into {table_name} {str_ids}.") |
| return [] |
|
|
| def update( |
| self, condition: dict, newValue: dict, indexName: str, knowledgebaseId: str |
| ) -> bool: |
| |
| |
| inf_conn = self.connPool.get_conn() |
| db_instance = inf_conn.get_database(self.dbName) |
| table_name = f"{indexName}_{knowledgebaseId}" |
| table_instance = db_instance.get_table(table_name) |
| |
| |
| filter = equivalent_condition_to_str(condition, table_instance) |
| for k, v in list(newValue.items()): |
| if k in ["important_kwd", "question_kwd", "entities_kwd", "tag_kwd", "source_id"]: |
| assert isinstance(v, list) |
| newValue[k] = "###".join(v) |
| elif re.search(r"_feas$", k): |
| newValue[k] = json.dumps(v) |
| elif k.endswith("_kwd") and isinstance(v, list): |
| newValue[k] = " ".join(v) |
| elif k == 'kb_id': |
| if isinstance(newValue[k], list): |
| newValue[k] = newValue[k][0] |
| elif k == "position_int": |
| assert isinstance(v, list) |
| arr = [num for row in v for num in row] |
| newValue[k] = "_".join(f"{num:08x}" for num in arr) |
| elif k in ["page_num_int", "top_int"]: |
| assert isinstance(v, list) |
| newValue[k] = "_".join(f"{num:08x}" for num in v) |
| elif k == "remove": |
| del newValue[k] |
| if v in [PAGERANK_FLD]: |
| newValue[v] = 0 |
|
|
| logger.debug(f"INFINITY update table {table_name}, filter {filter}, newValue {newValue}.") |
| table_instance.update(filter, newValue) |
| self.connPool.release_conn(inf_conn) |
| return True |
|
|
| def delete(self, condition: dict, indexName: str, knowledgebaseId: str) -> int: |
| inf_conn = self.connPool.get_conn() |
| db_instance = inf_conn.get_database(self.dbName) |
| table_name = f"{indexName}_{knowledgebaseId}" |
| try: |
| table_instance = db_instance.get_table(table_name) |
| except Exception: |
| logger.warning( |
| f"Skipped deleting from table {table_name} since the table doesn't exist." |
| ) |
| return 0 |
| filter = equivalent_condition_to_str(condition, table_instance) |
| logger.debug(f"INFINITY delete table {table_name}, filter {filter}.") |
| res = table_instance.delete(filter) |
| self.connPool.release_conn(inf_conn) |
| return res.deleted_rows |
|
|
| """ |
| Helper functions for search result |
| """ |
|
|
| def getTotal(self, res: tuple[pl.DataFrame, int] | pl.DataFrame) -> int: |
| if isinstance(res, tuple): |
| return res[1] |
| return len(res) |
|
|
| def getChunkIds(self, res: tuple[pl.DataFrame, int] | pl.DataFrame) -> list[str]: |
| if isinstance(res, tuple): |
| res = res[0] |
| return list(res["id"]) |
|
|
| def getFields(self, res: tuple[pl.DataFrame, int] | pl.DataFrame, fields: list[str]) -> list[str, dict]: |
| if isinstance(res, tuple): |
| res = res[0] |
| res_fields = {} |
| if not fields: |
| return {} |
| num_rows = len(res) |
| column_id = res["id"] |
| for i in range(num_rows): |
| id = column_id[i] |
| m = {"id": id} |
| for fieldnm in fields: |
| if fieldnm not in res: |
| m[fieldnm] = None |
| continue |
| v = res[fieldnm][i] |
| if isinstance(v, Series): |
| v = list(v) |
| elif fieldnm in ["important_kwd", "question_kwd", "entities_kwd", "tag_kwd", "source_id"]: |
| assert isinstance(v, str) |
| v = [kwd for kwd in v.split("###") if kwd] |
| elif fieldnm == "position_int": |
| assert isinstance(v, str) |
| if v: |
| arr = [int(hex_val, 16) for hex_val in v.split('_')] |
| v = [arr[i:i + 5] for i in range(0, len(arr), 5)] |
| else: |
| v = [] |
| elif fieldnm in ["page_num_int", "top_int"]: |
| assert isinstance(v, str) |
| if v: |
| v = [int(hex_val, 16) for hex_val in v.split('_')] |
| else: |
| v = [] |
| else: |
| if not isinstance(v, str): |
| v = str(v) |
| |
| |
| m[fieldnm] = v |
| res_fields[id] = m |
| return res_fields |
|
|
| def getHighlight(self, res: tuple[pl.DataFrame, int] | pl.DataFrame, keywords: list[str], fieldnm: str): |
| if isinstance(res, tuple): |
| res = res[0] |
| ans = {} |
| num_rows = len(res) |
| column_id = res["id"] |
| if fieldnm not in res: |
| return {} |
| for i in range(num_rows): |
| id = column_id[i] |
| txt = res[fieldnm][i] |
| txt = re.sub(r"[\r\n]", " ", txt, flags=re.IGNORECASE | re.MULTILINE) |
| txts = [] |
| for t in re.split(r"[.?!;\n]", txt): |
| for w in keywords: |
| t = re.sub( |
| r"(^|[ .?/'\"\(\)!,:;-])(%s)([ .?/'\"\(\)!,:;-])" |
| % re.escape(w), |
| r"\1<em>\2</em>\3", |
| t, |
| flags=re.IGNORECASE | re.MULTILINE, |
| ) |
| if not re.search( |
| r"<em>[^<>]+</em>", t, flags=re.IGNORECASE | re.MULTILINE |
| ): |
| continue |
| txts.append(t) |
| ans[id] = "...".join(txts) |
| return ans |
|
|
| def getAggregation(self, res: tuple[pl.DataFrame, int] | pl.DataFrame, fieldnm: str): |
| """ |
| TODO: Infinity doesn't provide aggregation |
| """ |
| return list() |
|
|
| """ |
| SQL |
| """ |
|
|
| def sql(sql: str, fetch_size: int, format: str): |
| raise NotImplementedError("Not implemented") |
|
|