Datasets:
Sub-tasks:
named-entity-recognition
Languages:
English
Multilinguality:
monolingual
Size Categories:
100K<n<1M
Language Creators:
found
License:
| {"EpiSet4NER": | |
| {"description": "EpiSet4NER is a bronze-standard dataset for epidemiological entity recognition of location, epidemiologic types (e.g. 'prevalence', 'annual incidence', 'estimated occurrence'), and epidemiological rates (e.g. '1.7 per 1,000,000 live births', '2.1:1.000.000', 'one in five million', '0.03%') created by the Genetic and Rare Diseases Information Center (GARD), a program in the National Center for Advancing Translational Sciences, one of the 27 National Institutes of Health. It was labeled programmatically using spaCy NER and rule-based methods. This weakly-supervised teaching method allowed us to construct this imprecise dataset with minimal manual effort and achieve satisfactory performance on a multi-type token classification problem. The test set was manually corrected by 3 NCATS researchers and a GARD curator (genetic and rare disease expert). It was used to train EpiExtract4GARD, a BioBERT-based model fine-tuned for NER.\nFor more details see https://github.com/ncats/epi4GARD/tree/master/EpiExtract4GARD \n", | |
| "citation": "PENDING", | |
| "homepage": "https://github.com/ncats/epi4GARD/tree/master/EpiExtract4GARD#epiextract4gard", | |
| "license": null, | |
| "features": {"id": {"dtype": "string", "id": null, "_type": "Value"}, | |
| "tokens": {"feature": {"dtype": "string", "id": null, "_type": "Value"}, "length": -1, "id": null, "_type": "Sequence"}, | |
| "ner_tags": {"feature": {"num_classes": 9, "names": [ | |
| "O", #(0) | |
| "B-LOC", #(1) | |
| "I-LOC", #(2) | |
| "B-EPI", #(3) | |
| "I-EPI", #(4) | |
| "B-STAT", #(5) | |
| "I-STAT", #(6) | |
| ], "names_file": null, "id": null, "_type": "ClassLabel"}, "length": -1, "id": null, "_type": "Sequence"}}, | |
| "builder_name": "EpiSet", | |
| "config_name": "EpiSet", | |
| "version": {"version_str": "3.2", "description": null, "major": 1, "minor": 0, "patch": 0}, | |
| "splits": { | |
| "train": {"name": "train", "num_abstracts": 456, "num_tokens": 117888, "dataset_name": "episet4ner"}, | |
| "validation": {"name": "validation","num_abstracts": 114, "num_tokens": 31262, "dataset_name": "episet4ner"}, | |
| "test": {"name": "test", "num_abstracts": 50, "num_tokens": 3453, "dataset_name": "episet4ner"}}, | |
| "dataset_abstracts": 620, | |
| "dataset_tokens": 163060, | |
| "size_in_bytes": 1300189}} |