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mm1109
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scRegNet

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biology
gene-regulatory-networks
single-cell
glioblastoma
perturbation
grn-inference
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Upload data/processed/validation/canonical_tfs.json with huggingface_hub

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  1. data/processed/validation/canonical_tfs.json +140 -0
data/processed/validation/canonical_tfs.json ADDED
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+ {
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+ "Astrocyte": {
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+ "canonical_tfs": [
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+ "SOX9",
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+ "NFIA",
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+ "NFIB"
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+ ],
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+ "n_canonical": 3,
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+ "missing_from_gstar": []
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+ },
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+ "Endothel": {
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+ "canonical_tfs": [
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+ "FLI1",
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+ "ERG",
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+ "ETS1",
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+ "KLF2"
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+ ],
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+ "n_canonical": 4,
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+ "missing_from_gstar": []
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+ },
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+ "Excitatory neuron": {
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+ "canonical_tfs": [
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+ "NEUROD2",
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+ "NEUROD6",
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+ "TBR1"
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+ ],
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+ "n_canonical": 3,
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+ "missing_from_gstar": []
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+ },
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+ "Inhibitory neuron": {
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+ "canonical_tfs": [
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+ "DLX1",
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+ "DLX2",
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+ "DLX5"
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+ ],
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+ "n_canonical": 3,
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+ "missing_from_gstar": []
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+ },
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+ "Lymphocyte": {
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+ "canonical_tfs": [
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+ "IKZF1",
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+ "TCF7",
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+ "LEF1",
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+ "GATA3",
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+ "TBX21"
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+ ],
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+ "n_canonical": 5,
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+ "missing_from_gstar": []
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+ },
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+ "Malignant": {
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+ "canonical_tfs": [],
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+ "n_canonical": 0,
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+ "missing_from_gstar": []
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+ },
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+ "Malignant_MES": {
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+ "canonical_tfs": [
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+ "CEBPB",
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+ "RUNX1",
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+ "RUNX2",
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+ "FOSL2",
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+ "BHLHE40",
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+ "WWTR1"
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+ ],
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+ "n_canonical": 6,
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+ "missing_from_gstar": []
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+ },
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+ "Malignant_OPC": {
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+ "canonical_tfs": [
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+ "SOX2",
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+ "OLIG2",
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+ "ASCL1",
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+ "NKX2-2",
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+ "SOX10"
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+ ],
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+ "n_canonical": 5,
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+ "missing_from_gstar": []
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+ },
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+ "Malignant_AC": {
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+ "canonical_tfs": [
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+ "SOX9",
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+ "NFIA",
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+ "NFIB",
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+ "HES1",
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+ "HEY1"
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+ ],
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+ "n_canonical": 5,
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+ "missing_from_gstar": []
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+ },
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+ "Malignant_NPC": {
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+ "canonical_tfs": [
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+ "SOX4",
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+ "SOX11",
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+ "NEUROD1",
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+ "NEUROG2"
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+ ],
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+ "n_canonical": 4,
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+ "missing_from_gstar": []
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+ },
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+ "OPC": {
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+ "canonical_tfs": [
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+ "OLIG2",
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+ "SOX10",
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+ "NKX2-2"
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+ ],
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+ "n_canonical": 3,
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+ "missing_from_gstar": []
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+ },
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+ "Oligodendrocyte": {
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+ "canonical_tfs": [
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+ "SOX10",
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+ "MYRF",
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+ "OLIG1",
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+ "OLIG2"
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+ ],
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+ "n_canonical": 4,
116
+ "missing_from_gstar": []
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+ },
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+ "Other": {
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+ "canonical_tfs": [],
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+ "n_canonical": 0,
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+ "missing_from_gstar": []
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+ },
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+ "Pericyte": {
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+ "canonical_tfs": [
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+ "NOTCH3"
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+ ],
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+ "n_canonical": 1,
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+ "missing_from_gstar": []
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+ },
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+ "TAM": {
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+ "canonical_tfs": [
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+ "SPI1",
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+ "CEBPB",
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+ "IRF8",
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+ "MAFB"
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+ ],
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+ "n_canonical": 4,
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+ "missing_from_gstar": []
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+ }
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+ }