Upload results/experiments/exp_1/runtime_wallclock.json with huggingface_hub

results/experiments/exp_1/runtime_wallclock.json

@@ -0,0 +1,83 @@
+{
+  "method_runtimes_sec": {
+    "correlation": {
+      "layer_a_chipatlas_sec": 19.242124,
+      "layer_b_curated_sec": 0.871538,
+      "layer_c_canonical_sec": 0.197274,
+      "layer_d_k562_sec": 0.694737,
+      "total_sec": 21.005673
+    },
+    "deepsem": {
+      "layer_a_chipatlas_sec": 1.377161,
+      "layer_b_curated_sec": 0.08245,
+      "layer_c_canonical_sec": 0.015056,
+      "layer_d_k562_sec": 0.074125,
+      "total_sec": 1.548792
+    },
+    "geneformer_attn": {
+      "layer_a_chipatlas_sec": 8.31889,
+      "layer_b_curated_sec": 0.423055,
+      "layer_c_canonical_sec": 0.085655,
+      "layer_d_k562_sec": 0.445306,
+      "total_sec": 9.272906
+    },
+    "genie3": {
+      "layer_a_chipatlas_sec": 17.806579,
+      "layer_b_curated_sec": 0.798014,
+      "layer_c_canonical_sec": 0.180552,
+      "layer_d_k562_sec": 0.650593,
+      "total_sec": 19.435738
+    },
+    "grnboost2": {
+      "layer_a_chipatlas_sec": 14.034096,
+      "layer_b_curated_sec": 0.646535,
+      "layer_c_canonical_sec": 0.142509,
+      "layer_d_k562_sec": 0.622533,
+      "total_sec": 15.445673
+    },
+    "inferelator": {
+      "layer_a_chipatlas_sec": 5.433204,
+      "layer_b_curated_sec": 0.296585,
+      "layer_c_canonical_sec": 0.058108,
+      "layer_d_k562_sec": 0.50169,
+      "total_sec": 6.289587
+    },
+    "random_null": {
+      "layer_a_chipatlas_sec": 13.758648,
+      "layer_b_curated_sec": 0.728264,
+      "layer_c_canonical_sec": 0.154618,
+      "layer_d_k562_sec": 0.66293,
+      "total_sec": 15.30446
+    },
+    "scenic": {
+      "layer_a_chipatlas_sec": 0.528207,
+      "layer_b_curated_sec": 0.041938,
+      "layer_c_canonical_sec": 0.006377,
+      "layer_d_k562_sec": 0.073127,
+      "total_sec": 0.649649
+    },
+    "scnet": {
+      "layer_a_chipatlas_sec": 12.46582,
+      "layer_b_curated_sec": 0.73204,
+      "layer_c_canonical_sec": 0.137382,
+      "layer_d_k562_sec": 0.689521,
+      "total_sec": 14.024763
+    },
+    "scregnet_geneformer": {
+      "layer_a_chipatlas_sec": 12.422738,
+      "layer_b_curated_sec": 0.718298,
+      "layer_c_canonical_sec": 0.137697,
+      "layer_d_k562_sec": 0.68274,
+      "total_sec": 13.961473
+    },
+    "scregnet_hgfb": {
+      "layer_a_chipatlas_sec": 12.635231,
+      "layer_b_curated_sec": 0.715656,
+      "layer_c_canonical_sec": 0.137819,
+      "layer_d_k562_sec": 0.682455,
+      "total_sec": 14.171161
+    }
+  },
+  "total_experiment_sec": 143.088647,
+  "notes": "Method runtime totals sum Layer A/B/C/D times only; all methods were evaluated sequentially on the same hardware."
+}