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ProCyon-Instruct

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Initial data upload (#2)

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- Initial data upload (f8ea20cbaf272334143f8bdc174bbdaaa9f34b9f)

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  1. generated_data/negative_sampling_masks/go_generic_masks.npy +3 -0
  2. generated_data/negative_sampling_masks/protein_dummy_masks.npy +3 -0
  3. generated_data/negative_sampling_probs/go_sims_jaccard.npy +3 -0
  4. generated_data/negative_sampling_probs/peptide_sims_esm2-3b_embeds_cosine.npy +3 -0
  5. generated_data/negative_sampling_probs/peptide_sims_esm2-3b_embeds_cosine.pt +3 -0
  6. generated_data/negative_sampling_probs/protein_sims_esm2-650m_embeds_cosine.npy +3 -0
  7. generated_data/negative_sampling_probs/protein_sims_esm2-650m_embeds_cosine.pt +3 -0
  8. generated_data/node_embeddings/domain/domain_esm2-3b_mean.pkl +3 -0
  9. generated_data/node_embeddings/domain/domain_esm2-3b_mean.pt +3 -0
  10. generated_data/node_embeddings/domain/domain_esm2-650m_mean.pkl +3 -0
  11. generated_data/node_embeddings/domain/domain_esm2-650m_mean.pt +3 -0
  12. generated_data/node_embeddings/domain/domain_esm3-sm-open-v1_mean.pkl +3 -0
  13. generated_data/node_embeddings/domain/domain_esm3-sm-open-v1_mean.pt +3 -0
  14. generated_data/node_embeddings/peptide/peptide_embeds_idmap.pkl +3 -0
  15. generated_data/node_embeddings/peptide/peptide_esm3b-mean.pt +3 -0
  16. generated_data/node_embeddings/protein/indexed_total_embeddings.pt +3 -0
  17. generated_data/node_embeddings/protein/protein_esm2-3b_mean.pkl +3 -0
  18. generated_data/node_embeddings/protein/protein_esm2-3b_mean.pt +3 -0
  19. generated_data/node_embeddings/protein/protein_esm3-sm-open-v1_mean.pkl +3 -0
  20. generated_data/node_embeddings/protein/protein_esm3-sm-open-v1_mean.pt +3 -0
  21. generated_data/node_embeddings/protein/protein_gearnet.pkl +3 -0
  22. generated_data/node_embeddings/protein/protein_gearnet.pt +3 -0
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