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README.md
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# Aggregator Advisor
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The
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If you want to try these processes with the original dataset, please follow the instructions in the [Processing Script.py](https://huggingface.co/datasets/maomlab/AggregatorAdvisor/blob/main/Preprocessing%20Script.py) file located in the AggregatorAdvisor.
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The [raw_data.csv](https://huggingface.co/datasets/maomlab/AggregatorAdvisor/blob/main/raw_data.csv) is the original dataset from the paper,
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and the files in [AggregatorAdvisor](https://huggingface.co/datasets/maomlab/AggregatorAdvisor/tree/main/AggregatorAdvisor) are the sanitized version files that we made.
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Here we have used the `Realistic Split` method described in [(Martin et al., 2018)](https://doi.org/10.1021/acs.jcim.7b00166) to split the AggregatorAdvisor dataset.
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## Citation
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num_examples: 2529
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# Aggregator Advisor
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The [Aggregator Advisor](https://advisor.docking.org/) is a web-tool hosted by the Shoichet Lab at UCSF and used to assess the risk of a compound being an aggregetor.
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The most current release (2022/06) contains 12645 compounds from 20 sources.
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The train and test datasets uploaded to our Hugging Face repository have been sanitized and split from the original dataset
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If you want to try these processes with the original dataset, please follow the instructions in the [Processing Script.py](https://huggingface.co/datasets/maomlab/AggregatorAdvisor/blob/main/Preprocessing%20Script.py) file located in the AggregatorAdvisor.
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The [raw_data.csv](https://huggingface.co/datasets/maomlab/AggregatorAdvisor/blob/main/raw_data.csv) is the original dataset from the paper,
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and the files in [AggregatorAdvisor](https://huggingface.co/datasets/maomlab/AggregatorAdvisor/tree/main/AggregatorAdvisor) are the sanitized version files that we made.
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Here we have used the `Realistic Split` method described in [(Martin et al., 2018)](https://doi.org/10.1021/acs.jcim.7b00166) to split the AggregatorAdvisor dataset.
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## Citation
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If you use this dataset please cite:
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An Aggregation Advisor for Ligand Discovery
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John J. Irwin, Da Duan, Hayarpi Torosyan, Allison K. Doak, Kristin T. Ziebart, Teague Sterling, Gurgen Tumanian, Brian K. Shoichet,
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J. Med. Chem. 2015, 58, 17, 7076–7087
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DOI: https://doi.org/10.1021/acs.jmedchem.5b01105
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